Job ID = 12237340
SRX = ERX202424
Genome = rm6
Started at	210330_14:54:29

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 56757221 spots for ERR227765/ERR227765.sra
Written 56757221 spots for ERR227765/ERR227765.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 4596901939 Mar 30 15:01 ERR227765_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 4024274474 Mar 30 15:01 ERR227765_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202424.sum.gz
 output alignment file  :ERX202424.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 51960 ms)
 -FM-Index for g2a genome.... finished (elapsed: 106460 ms)
 -suffix array for c2t genome.... finished (elapsed: 116370 ms)
 -suffix array for g2a genome.... finished (elapsed: 126163 ms)
 -reference sequence.... finished (elapsed: 126628 ms)
Index loading finished.
File(s) loaded: ERR227765_1.fastq.gz, ERR227765_2.fastq.gz.
Time elapsed:4753134 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202424’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 8938906762 Mar 30 16:28 ERX202424.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku 1085220690 Mar 30 16:28 ERX202424.sum.gz
ERX202424.sum.gz was set to analysis list.
Analyzing ERX202424.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6174 Mar 30 16:43 ERX202424.mapsum.html
Processing "ERX202424.bisulalign.gz" (8938906762 bytes)
***************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 16:48 ERX202424.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      551914 Mar 30 16:55 ERX202424.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202424.graph
Output File (methyl)    :ERX202424.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202424.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202424.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   227634542 Mar 30 17:09 ERX202424.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    96540839 Mar 30 17:09 ERX202424.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   254775416 Mar 30 17:09 ERX202424.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    755550 Mar 30 17:42 ERX202424.hmr
-rw-r--r-- 1 okishinya so-ddmku     41883 Mar 30 17:42 ERX202424.pmd
-rw-r--r-- 1 okishinya so-ddmku   9202374 Mar 30 17:42 ERX202424.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 152055508 Mar 30 17:46 ERX202424.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 142861120 Mar 30 17:44 ERX202424.cpg.methyl.bw

=-=-=num_reads	56757218
=-=-=mapping_rate_1	0.89
=-=-=mapping_rate_2	0.884
=-=-=methyl_rate_cpg_total	0.612
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	31534
=-=-=partial_methyl_region	1752
=-=-=high_methyl_region	383352
=-=-=coverage	2.92956
=-=-=end	210330_17:47:00
=-=-=duration	2.875