Job ID = 12237344
SRX = ERX202423
Genome = rm6
Started at	210330_14:55:10

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 57891081 spots for ERR227764/ERR227764.sra
Written 57891081 spots for ERR227764/ERR227764.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 4733507486 Mar 30 15:01 ERR227764_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 4127614900 Mar 30 15:01 ERR227764_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202423.sum.gz
 output alignment file  :ERX202423.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 31478 ms)
 -FM-Index for g2a genome.... finished (elapsed: 62076 ms)
 -suffix array for c2t genome.... finished (elapsed: 74826 ms)
 -suffix array for g2a genome.... finished (elapsed: 87725 ms)
 -reference sequence.... finished (elapsed: 88746 ms)
Index loading finished.
File(s) loaded: ERR227764_1.fastq.gz, ERR227764_2.fastq.gz.
Time elapsed:6714668 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202423’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 9116883976 Mar 30 17:00 ERX202423.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku 1107419425 Mar 30 17:00 ERX202423.sum.gz
ERX202423.sum.gz was set to analysis list.
Analyzing ERX202423.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6269 Mar 30 17:11 ERX202423.mapsum.html
Processing "ERX202423.bisulalign.gz" (9116883976 bytes)
**: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:17 ERX202423.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      551962 Mar 30 17:22 ERX202423.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202423.graph
Output File (methyl)    :ERX202423.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202423.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202423.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   227718318 Mar 30 17:34 ERX202423.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    97440244 Mar 30 17:34 ERX202423.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   255045161 Mar 30 17:34 ERX202423.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    760920 Mar 30 18:02 ERX202423.hmr
-rw-r--r-- 1 okishinya so-ddmku     43424 Mar 30 18:02 ERX202423.pmd
-rw-r--r-- 1 okishinya so-ddmku   9171407 Mar 30 18:02 ERX202423.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 153203006 Mar 30 18:06 ERX202423.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 143981792 Mar 30 18:04 ERX202423.cpg.methyl.bw

=-=-=num_reads	57891079
=-=-=mapping_rate_1	0.89
=-=-=mapping_rate_2	0.885
=-=-=methyl_rate_cpg_total	0.614
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	31768
=-=-=partial_methyl_region	1814
=-=-=high_methyl_region	382031
=-=-=coverage	2.98154
=-=-=end	210330_18:06:42
=-=-=duration	3.192