Job ID = 12237301
SRX = ERX202422
Genome = rm6
Started at	210330_14:51:14

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 34823107 spots for ERR227763/ERR227763.sra
Written 34823107 spots for ERR227763/ERR227763.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 3019979343 Mar 30 14:56 ERR227763_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2806803161 Mar 30 14:56 ERR227763_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202422.sum.gz
 output alignment file  :ERX202422.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 36051 ms)
 -FM-Index for g2a genome.... finished (elapsed: 72090 ms)
 -suffix array for c2t genome.... finished (elapsed: 88281 ms)
 -suffix array for g2a genome.... finished (elapsed: 110103 ms)
 -reference sequence.... finished (elapsed: 111554 ms)
Index loading finished.
File(s) loaded: ERR227763_1.fastq.gz, ERR227763_2.fastq.gz.
Time elapsed:3883754 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202422’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 5400088702 Mar 30 16:06 ERX202422.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  668144235 Mar 30 16:06 ERX202422.sum.gz
ERX202422.sum.gz was set to analysis list.
Analyzing ERX202422.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6149 Mar 30 16:15 ERX202422.mapsum.html
Processing "ERX202422.bisulalign.gz" (5400088702 bytes)
*********: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 16:21 ERX202422.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      555605 Mar 30 16:29 ERX202422.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202422.graph
Output File (methyl)    :ERX202422.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202422.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202422.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   224778770 Mar 30 16:44 ERX202422.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    80980567 Mar 30 16:44 ERX202422.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   247664862 Mar 30 16:44 ERX202422.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    733182 Mar 30 17:18 ERX202422.hmr
-rw-r--r-- 1 okishinya so-ddmku     36211 Mar 30 17:18 ERX202422.pmd
-rw-r--r-- 1 okishinya so-ddmku   9385840 Mar 30 17:18 ERX202422.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 135601577 Mar 30 17:23 ERX202422.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 123456817 Mar 30 17:21 ERX202422.cpg.methyl.bw

=-=-=num_reads	34823106
=-=-=mapping_rate_1	0.891
=-=-=mapping_rate_2	0.878
=-=-=methyl_rate_cpg_total	0.6
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	30608
=-=-=partial_methyl_region	1516
=-=-=high_methyl_region	391373
=-=-=coverage	1.4203
=-=-=end	210330_17:23:41
=-=-=duration	2.540