Job ID = 12237313
SRX = ERX202421
Genome = rm6
Started at	210330_14:51:29

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 45981650 spots for ERR227762/ERR227762.sra
Written 45981650 spots for ERR227762/ERR227762.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 3912819231 Mar 30 14:58 ERR227762_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 3822450543 Mar 30 14:58 ERR227762_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202421.sum.gz
 output alignment file  :ERX202421.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 36101 ms)
 -FM-Index for g2a genome.... finished (elapsed: 72076 ms)
 -suffix array for c2t genome.... finished (elapsed: 87352 ms)
 -suffix array for g2a genome.... finished (elapsed: 103382 ms)
 -reference sequence.... finished (elapsed: 104632 ms)
Index loading finished.
File(s) loaded: ERR227762_1.fastq.gz, ERR227762_2.fastq.gz.
Time elapsed:5259845 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202421’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 7066473243 Mar 30 16:32 ERX202421.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  879405567 Mar 30 16:32 ERX202421.sum.gz
ERX202421.sum.gz was set to analysis list.
Analyzing ERX202421.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6079 Mar 30 16:45 ERX202421.mapsum.html
Processing "ERX202421.bisulalign.gz" (7066473243 bytes)
****: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 16:52 ERX202421.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      551898 Mar 30 17:00 ERX202421.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202421.graph
Output File (methyl)    :ERX202421.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202421.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202421.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   225876610 Mar 30 17:15 ERX202421.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    91323489 Mar 30 17:15 ERX202421.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   251845015 Mar 30 17:15 ERX202421.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    790839 Mar 30 17:52 ERX202421.hmr
-rw-r--r-- 1 okishinya so-ddmku     39481 Mar 30 17:52 ERX202421.pmd
-rw-r--r-- 1 okishinya so-ddmku   9193793 Mar 30 17:52 ERX202421.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 148532827 Mar 30 17:57 ERX202421.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 137170345 Mar 30 17:55 ERX202421.cpg.methyl.bw

=-=-=num_reads	45981649
=-=-=mapping_rate_1	0.888
=-=-=mapping_rate_2	0.867
=-=-=methyl_rate_cpg_total	0.613
=-=-=methyl_rate_cpg_lambda	0.941
=-=-=low_methyl_region	33009
=-=-=partial_methyl_region	1651
=-=-=high_methyl_region	383130
=-=-=coverage	1.87781
=-=-=end	210330_17:57:55
=-=-=duration	3.107