Job ID = 12237258
SRX = ERX202420
Genome = rm6
Started at	210330_14:50:44

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 24708381 spots for ERR227761/ERR227761.sra
Written 24708381 spots for ERR227761/ERR227761.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 1832258208 Mar 30 14:53 ERR227761_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2114963964 Mar 30 14:53 ERR227761_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202420.sum.gz
 output alignment file  :ERX202420.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 52656 ms)
 -FM-Index for g2a genome.... finished (elapsed: 108175 ms)
 -suffix array for c2t genome.... finished (elapsed: 145231 ms)
 -suffix array for g2a genome.... finished (elapsed: 193118 ms)
 -reference sequence.... finished (elapsed: 194489 ms)
Index loading finished.
File(s) loaded: ERR227761_1.fastq.gz, ERR227761_2.fastq.gz.
Time elapsed:2201379 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202420’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 3691843532 Mar 30 15:33 ERX202420.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  485348839 Mar 30 15:33 ERX202420.sum.gz
ERX202420.sum.gz was set to analysis list.
Analyzing ERX202420.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       5877 Mar 30 15:39 ERX202420.mapsum.html
Processing "ERX202420.bisulalign.gz" (3691843532 bytes)
**********************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 15:43 ERX202420.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      553379 Mar 30 15:50 ERX202420.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202420.graph
Output File (methyl)    :ERX202420.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202420.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202420.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   223502604 Mar 30 16:03 ERX202420.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    66092584 Mar 30 16:03 ERX202420.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   242181373 Mar 30 16:03 ERX202420.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    667911 Mar 30 16:29 ERX202420.hmr
-rw-r--r-- 1 okishinya so-ddmku     33258 Mar 30 16:29 ERX202420.pmd
-rw-r--r-- 1 okishinya so-ddmku   9452457 Mar 30 16:29 ERX202420.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 115792987 Mar 30 16:33 ERX202420.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  79140864 Mar 30 16:31 ERX202420.cpg.methyl.bw

=-=-=num_reads	24708380
=-=-=mapping_rate_1	0.845
=-=-=mapping_rate_2	0.865
=-=-=methyl_rate_cpg_total	0.568
=-=-=methyl_rate_cpg_lambda	0.922
=-=-=low_methyl_region	27890
=-=-=partial_methyl_region	1392
=-=-=high_methyl_region	394253
=-=-=coverage	0.918322
=-=-=end	210330_16:33:18
=-=-=duration	1.709