Job ID = 12237310
SRX = ERX202419
Genome = rm6
Started at	210330_14:51:29

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 45537779 spots for ERR227760/ERR227760.sra
Written 45537779 spots for ERR227760/ERR227760.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 3752999751 Mar 30 14:58 ERR227760_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 3889819040 Mar 30 14:58 ERR227760_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202419.sum.gz
 output alignment file  :ERX202419.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 34888 ms)
 -FM-Index for g2a genome.... finished (elapsed: 69935 ms)
 -suffix array for c2t genome.... finished (elapsed: 78043 ms)
 -suffix array for g2a genome.... finished (elapsed: 87282 ms)
 -reference sequence.... finished (elapsed: 87576 ms)
Index loading finished.
File(s) loaded: ERR227760_1.fastq.gz, ERR227760_2.fastq.gz.
Time elapsed:6032016 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202419’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 6949599883 Mar 30 16:45 ERX202419.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  902563314 Mar 30 16:45 ERX202419.sum.gz
ERX202419.sum.gz was set to analysis list.
Analyzing ERX202419.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6787 Mar 30 16:57 ERX202419.mapsum.html
Processing "ERX202419.bisulalign.gz" (6949599883 bytes)
**********: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:04 ERX202419.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      551951 Mar 30 17:11 ERX202419.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202419.graph
Output File (methyl)    :ERX202419.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202419.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202419.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   225732085 Mar 30 17:27 ERX202419.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    89395995 Mar 30 17:27 ERX202419.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   251485783 Mar 30 17:27 ERX202419.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    775725 Mar 30 18:03 ERX202419.hmr
-rw-r--r-- 1 okishinya so-ddmku     38286 Mar 30 18:03 ERX202419.pmd
-rw-r--r-- 1 okishinya so-ddmku   9221806 Mar 30 18:03 ERX202419.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 145977449 Mar 30 18:08 ERX202419.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 134535675 Mar 30 18:06 ERX202419.cpg.methyl.bw

=-=-=num_reads	45537778
=-=-=mapping_rate_1	0.878
=-=-=mapping_rate_2	0.865
=-=-=methyl_rate_cpg_total	0.602
=-=-=methyl_rate_cpg_lambda	0.914
=-=-=low_methyl_region	32376
=-=-=partial_methyl_region	1601
=-=-=high_methyl_region	384273
=-=-=coverage	1.80225
=-=-=end	210330_18:08:56
=-=-=duration	3.290