Job ID = 12237332
SRX = ERX202418
Genome = rm6
Started at	210330_14:52:59

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 54857933 spots for ERR227759/ERR227759.sra
Written 54857933 spots for ERR227759/ERR227759.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 4523355126 Mar 30 15:00 ERR227759_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 4401512231 Mar 30 15:00 ERR227759_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202418.sum.gz
 output alignment file  :ERX202418.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 54356 ms)
 -FM-Index for g2a genome.... finished (elapsed: 110467 ms)
 -suffix array for c2t genome.... finished (elapsed: 123152 ms)
 -suffix array for g2a genome.... finished (elapsed: 135282 ms)
 -reference sequence.... finished (elapsed: 135708 ms)
Index loading finished.
File(s) loaded: ERR227759_1.fastq.gz, ERR227759_2.fastq.gz.
Time elapsed:7012145 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202418’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 8440628075 Mar 30 17:04 ERX202418.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku 1053149633 Mar 30 17:04 ERX202418.sum.gz
ERX202418.sum.gz was set to analysis list.
Analyzing ERX202418.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6075 Mar 30 17:18 ERX202418.mapsum.html
Processing "ERX202418.bisulalign.gz" (8440628075 bytes)
***: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:24 ERX202418.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      552015 Mar 30 17:32 ERX202418.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202418.graph
Output File (methyl)    :ERX202418.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202418.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202418.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   226758942 Mar 30 17:46 ERX202418.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    97375283 Mar 30 17:46 ERX202418.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   254752423 Mar 30 17:46 ERX202418.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    816799 Mar 30 18:21 ERX202418.hmr
-rw-r--r-- 1 okishinya so-ddmku     39490 Mar 30 18:21 ERX202418.pmd
-rw-r--r-- 1 okishinya so-ddmku   9098635 Mar 30 18:21 ERX202418.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 155194036 Mar 30 18:25 ERX202418.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 144818923 Mar 30 18:23 ERX202418.cpg.methyl.bw

=-=-=num_reads	54857933
=-=-=mapping_rate_1	0.886
=-=-=mapping_rate_2	0.873
=-=-=methyl_rate_cpg_total	0.616
=-=-=methyl_rate_cpg_lambda	0.867
=-=-=low_methyl_region	34090
=-=-=partial_methyl_region	1650
=-=-=high_methyl_region	379087
=-=-=coverage	2.29564
=-=-=end	210330_18:25:45
=-=-=duration	3.546