Job ID = 12237308
SRX = ERX202417
Genome = rm6
Started at	210330_14:51:37

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 43160037 spots for ERR227758/ERR227758.sra
Written 43160037 spots for ERR227758/ERR227758.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 3608901031 Mar 30 14:58 ERR227758_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 3523550569 Mar 30 14:58 ERR227758_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202417.sum.gz
 output alignment file  :ERX202417.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 35973 ms)
 -FM-Index for g2a genome.... finished (elapsed: 71754 ms)
 -suffix array for c2t genome.... finished (elapsed: 88558 ms)
 -suffix array for g2a genome.... finished (elapsed: 105266 ms)
 -reference sequence.... finished (elapsed: 106479 ms)
Index loading finished.
File(s) loaded: ERR227758_1.fastq.gz, ERR227758_2.fastq.gz.
Time elapsed:4451162 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202417’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 5876235480 Mar 30 16:18 ERX202417.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  811599463 Mar 30 16:18 ERX202417.sum.gz
ERX202417.sum.gz was set to analysis list.
Analyzing ERX202417.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6059 Mar 30 16:28 ERX202417.mapsum.html
Processing "ERX202417.bisulalign.gz" (5876235480 bytes)
******************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 16:34 ERX202417.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557523 Mar 30 16:42 ERX202417.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202417.graph
Output File (methyl)    :ERX202417.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202417.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202417.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   225029455 Mar 30 16:57 ERX202417.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    75069480 Mar 30 16:57 ERX202417.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   247160863 Mar 30 16:57 ERX202417.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    673125 Mar 30 17:28 ERX202417.hmr
-rw-r--r-- 1 okishinya so-ddmku     34354 Mar 30 17:28 ERX202417.pmd
-rw-r--r-- 1 okishinya so-ddmku   9521836 Mar 30 17:28 ERX202417.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 126122816 Mar 30 17:33 ERX202417.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 116231541 Mar 30 17:31 ERX202417.cpg.methyl.bw

=-=-=num_reads	43160036
=-=-=mapping_rate_1	0.861
=-=-=mapping_rate_2	0.839
=-=-=methyl_rate_cpg_total	0.586
=-=-=methyl_rate_cpg_lambda	0.927
=-=-=low_methyl_region	28106
=-=-=partial_methyl_region	1437
=-=-=high_methyl_region	397143
=-=-=coverage	1.73843
=-=-=end	210330_17:33:27
=-=-=duration	2.697