Job ID = 12237312
SRX = ERX202416
Genome = rm6
Started at	210330_14:51:29

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 45954494 spots for ERR227757/ERR227757.sra
Written 45954494 spots for ERR227757/ERR227757.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 3692990849 Mar 30 14:59 ERR227757_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 3869200033 Mar 30 14:59 ERR227757_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202416.sum.gz
 output alignment file  :ERX202416.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 35062 ms)
 -FM-Index for g2a genome.... finished (elapsed: 70113 ms)
 -suffix array for c2t genome.... finished (elapsed: 78323 ms)
 -suffix array for g2a genome.... finished (elapsed: 92637 ms)
 -reference sequence.... finished (elapsed: 93705 ms)
Index loading finished.
File(s) loaded: ERR227757_1.fastq.gz, ERR227757_2.fastq.gz.
Time elapsed:4760380 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202416’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 6181918533 Mar 30 16:24 ERX202416.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  892042984 Mar 30 16:24 ERX202416.sum.gz
ERX202416.sum.gz was set to analysis list.
Analyzing ERX202416.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6160 Mar 30 16:35 ERX202416.mapsum.html
Processing "ERX202416.bisulalign.gz" (6181918533 bytes)
*********: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 16:42 ERX202416.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557625 Mar 30 16:50 ERX202416.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202416.graph
Output File (methyl)    :ERX202416.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202416.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202416.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   225182088 Mar 30 17:05 ERX202416.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    76213101 Mar 30 17:05 ERX202416.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   247775847 Mar 30 17:05 ERX202416.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    666403 Mar 30 17:37 ERX202416.hmr
-rw-r--r-- 1 okishinya so-ddmku     33246 Mar 30 17:37 ERX202416.pmd
-rw-r--r-- 1 okishinya so-ddmku   9472210 Mar 30 17:37 ERX202416.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 127668810 Mar 30 17:42 ERX202416.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 117677519 Mar 30 17:40 ERX202416.cpg.methyl.bw

=-=-=num_reads	45954493
=-=-=mapping_rate_1	0.848
=-=-=mapping_rate_2	0.837
=-=-=methyl_rate_cpg_total	0.58
=-=-=methyl_rate_cpg_lambda	0.929
=-=-=low_methyl_region	27827
=-=-=partial_methyl_region	1392
=-=-=high_methyl_region	394945
=-=-=coverage	1.78543
=-=-=end	210330_17:42:27
=-=-=duration	2.849