Job ID = 12237315
SRX = ERX202415
Genome = rm6
Started at	210330_14:51:29

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 46159454 spots for ERR227756/ERR227756.sra
Written 46159454 spots for ERR227756/ERR227756.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 3722788330 Mar 30 14:58 ERR227756_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 3873443320 Mar 30 14:58 ERR227756_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202415.sum.gz
 output alignment file  :ERX202415.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 34979 ms)
 -FM-Index for g2a genome.... finished (elapsed: 70921 ms)
 -suffix array for c2t genome.... finished (elapsed: 87592 ms)
 -suffix array for g2a genome.... finished (elapsed: 104257 ms)
 -reference sequence.... finished (elapsed: 105638 ms)
Index loading finished.
File(s) loaded: ERR227756_1.fastq.gz, ERR227756_2.fastq.gz.
Time elapsed:5526422 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202415’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 6219487300 Mar 30 16:36 ERX202415.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  896616936 Mar 30 16:36 ERX202415.sum.gz
ERX202415.sum.gz was set to analysis list.
Analyzing ERX202415.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6159 Mar 30 16:47 ERX202415.mapsum.html
Processing "ERX202415.bisulalign.gz" (6219487300 bytes)
*****************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 16:54 ERX202415.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557608 Mar 30 17:01 ERX202415.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202415.graph
Output File (methyl)    :ERX202415.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202415.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202415.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   225207104 Mar 30 17:16 ERX202415.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    76461921 Mar 30 17:16 ERX202415.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   247886194 Mar 30 17:16 ERX202415.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    667181 Mar 30 17:48 ERX202415.hmr
-rw-r--r-- 1 okishinya so-ddmku     33191 Mar 30 17:48 ERX202415.pmd
-rw-r--r-- 1 okishinya so-ddmku   9475992 Mar 30 17:48 ERX202415.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 128040449 Mar 30 17:53 ERX202415.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 118072445 Mar 30 17:51 ERX202415.cpg.methyl.bw

=-=-=num_reads	46159454
=-=-=mapping_rate_1	0.848
=-=-=mapping_rate_2	0.839
=-=-=methyl_rate_cpg_total	0.581
=-=-=methyl_rate_cpg_lambda	0.935
=-=-=low_methyl_region	27856
=-=-=partial_methyl_region	1390
=-=-=high_methyl_region	395158
=-=-=coverage	1.79474
=-=-=end	210330_17:53:29
=-=-=duration	3.033