Job ID = 12237322
SRX = ERX202414
Genome = rm6
Started at	210330_14:51:29

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 49327020 spots for ERR227755/ERR227755.sra
Written 49327020 spots for ERR227755/ERR227755.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 3995868087 Mar 30 14:58 ERR227755_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 3856678176 Mar 30 14:58 ERR227755_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202414.sum.gz
 output alignment file  :ERX202414.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 34925 ms)
 -FM-Index for g2a genome.... finished (elapsed: 70651 ms)
 -suffix array for c2t genome.... finished (elapsed: 79339 ms)
 -suffix array for g2a genome.... finished (elapsed: 87956 ms)
 -reference sequence.... finished (elapsed: 88285 ms)
Index loading finished.
File(s) loaded: ERR227755_1.fastq.gz, ERR227755_2.fastq.gz.
Time elapsed:6092974 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202414’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 6745971837 Mar 30 16:47 ERX202414.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  930425368 Mar 30 16:47 ERX202414.sum.gz
ERX202414.sum.gz was set to analysis list.
Analyzing ERX202414.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6219 Mar 30 16:59 ERX202414.mapsum.html
Processing "ERX202414.bisulalign.gz" (6745971837 bytes)
*********************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 17:06 ERX202414.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557660 Mar 30 17:14 ERX202414.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202414.graph
Output File (methyl)    :ERX202414.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202414.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202414.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   225639403 Mar 30 17:29 ERX202414.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    80407447 Mar 30 17:29 ERX202414.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   249405598 Mar 30 17:29 ERX202414.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    696239 Mar 30 18:02 ERX202414.hmr
-rw-r--r-- 1 okishinya so-ddmku     36183 Mar 30 18:02 ERX202414.pmd
-rw-r--r-- 1 okishinya so-ddmku   9444857 Mar 30 18:02 ERX202414.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 132356777 Mar 30 18:07 ERX202414.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 122895962 Mar 30 18:05 ERX202414.cpg.methyl.bw

=-=-=num_reads	49327019
=-=-=mapping_rate_1	0.86
=-=-=mapping_rate_2	0.849
=-=-=methyl_rate_cpg_total	0.587
=-=-=methyl_rate_cpg_lambda	0.9
=-=-=low_methyl_region	29067
=-=-=partial_methyl_region	1514
=-=-=high_methyl_region	393922
=-=-=coverage	2.08309
=-=-=end	210330_18:07:32
=-=-=duration	3.267