Job ID = 12237274
SRX = ERX202413
Genome = rm6
Started at	210330_14:50:59

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 28991828 spots for ERR227754/ERR227754.sra
Written 28991828 spots for ERR227754/ERR227754.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2430482519 Mar 30 14:54 ERR227754_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 1765652428 Mar 30 14:54 ERR227754_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202413.sum.gz
 output alignment file  :ERX202413.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 53008 ms)
 -FM-Index for g2a genome.... finished (elapsed: 108649 ms)
 -suffix array for c2t genome.... finished (elapsed: 126355 ms)
 -suffix array for g2a genome.... finished (elapsed: 170649 ms)
 -reference sequence.... finished (elapsed: 171843 ms)
Index loading finished.
File(s) loaded: ERR227754_1.fastq.gz, ERR227754_2.fastq.gz.
Time elapsed:2099151 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202413’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 3966502244 Mar 30 15:32 ERX202413.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  547321570 Mar 30 15:32 ERX202413.sum.gz
ERX202413.sum.gz was set to analysis list.
Analyzing ERX202413.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6242 Mar 30 15:39 ERX202413.mapsum.html
Processing "ERX202413.bisulalign.gz" (3966502244 bytes)
***********************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 15:43 ERX202413.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      553306 Mar 30 15:50 ERX202413.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202413.graph
Output File (methyl)    :ERX202413.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202413.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202413.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   223726494 Mar 30 16:03 ERX202413.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    65007582 Mar 30 16:03 ERX202413.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   242037824 Mar 30 16:03 ERX202413.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    627417 Mar 30 16:29 ERX202413.hmr
-rw-r--r-- 1 okishinya so-ddmku     28906 Mar 30 16:29 ERX202413.pmd
-rw-r--r-- 1 okishinya so-ddmku   9317261 Mar 30 16:29 ERX202413.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 113162196 Mar 30 16:32 ERX202413.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  78163354 Mar 30 16:31 ERX202413.cpg.methyl.bw

=-=-=num_reads	28991827
=-=-=mapping_rate_1	0.89
=-=-=mapping_rate_2	0.84
=-=-=methyl_rate_cpg_total	0.548
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	26200
=-=-=partial_methyl_region	1210
=-=-=high_methyl_region	388608
=-=-=coverage	1.10611
=-=-=end	210330_16:32:55
=-=-=duration	1.698