Job ID = 12237278
SRX = ERX202412
Genome = rm6
Started at	210330_14:50:59

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 30381967 spots for ERR227753/ERR227753.sra
Written 30381967 spots for ERR227753/ERR227753.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2511262145 Mar 30 14:54 ERR227753_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 1838861295 Mar 30 14:54 ERR227753_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202412.sum.gz
 output alignment file  :ERX202412.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 52831 ms)
 -FM-Index for g2a genome.... finished (elapsed: 108717 ms)
 -suffix array for c2t genome.... finished (elapsed: 127529 ms)
 -suffix array for g2a genome.... finished (elapsed: 165514 ms)
 -reference sequence.... finished (elapsed: 166954 ms)
Index loading finished.
File(s) loaded: ERR227753_1.fastq.gz, ERR227753_2.fastq.gz.
Time elapsed:2196814 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202412’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 4092854290 Mar 30 15:34 ERX202412.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  569280452 Mar 30 15:34 ERX202412.sum.gz
ERX202412.sum.gz was set to analysis list.
Analyzing ERX202412.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6176 Mar 30 15:41 ERX202412.mapsum.html
Processing "ERX202412.bisulalign.gz" (4092854290 bytes)
*******************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 15:45 ERX202412.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      553308 Mar 30 15:52 ERX202412.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202412.graph
Output File (methyl)    :ERX202412.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202412.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202412.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   223835539 Mar 30 16:05 ERX202412.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    66155759 Mar 30 16:05 ERX202412.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   242374814 Mar 30 16:05 ERX202412.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    625703 Mar 30 16:31 ERX202412.hmr
-rw-r--r-- 1 okishinya so-ddmku     27545 Mar 30 16:31 ERX202412.pmd
-rw-r--r-- 1 okishinya so-ddmku   9302199 Mar 30 16:31 ERX202412.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 114757703 Mar 30 16:34 ERX202412.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  79415218 Mar 30 16:33 ERX202412.cpg.methyl.bw

=-=-=num_reads	30381965
=-=-=mapping_rate_1	0.873
=-=-=mapping_rate_2	0.84
=-=-=methyl_rate_cpg_total	0.551
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	26123
=-=-=partial_methyl_region	1152
=-=-=high_methyl_region	388036
=-=-=coverage	1.14129
=-=-=end	210330_16:34:53
=-=-=duration	1.731