Job ID = 12237276
SRX = ERX202411
Genome = rm6
Started at	210330_14:50:59

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 29128071 spots for ERR227752/ERR227752.sra
Written 29128071 spots for ERR227752/ERR227752.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2411205996 Mar 30 14:54 ERR227752_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 1752528685 Mar 30 14:54 ERR227752_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202411.sum.gz
 output alignment file  :ERX202411.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 53151 ms)
 -FM-Index for g2a genome.... finished (elapsed: 108747 ms)
 -suffix array for c2t genome.... finished (elapsed: 119491 ms)
 -suffix array for g2a genome.... finished (elapsed: 129598 ms)
 -reference sequence.... finished (elapsed: 130013 ms)
Index loading finished.
File(s) loaded: ERR227752_1.fastq.gz, ERR227752_2.fastq.gz.
Time elapsed:2086314 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202411’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 3988631800 Mar 30 15:32 ERX202411.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  550415080 Mar 30 15:32 ERX202411.sum.gz
ERX202411.sum.gz was set to analysis list.
Analyzing ERX202411.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6159 Mar 30 15:39 ERX202411.mapsum.html
Processing "ERX202411.bisulalign.gz" (3988631800 bytes)
**: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 15:43 ERX202411.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      553333 Mar 30 15:50 ERX202411.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202411.graph
Output File (methyl)    :ERX202411.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202411.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202411.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   223756838 Mar 30 16:03 ERX202411.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    65340604 Mar 30 16:03 ERX202411.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   242091070 Mar 30 16:03 ERX202411.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    626365 Mar 30 16:28 ERX202411.hmr
-rw-r--r-- 1 okishinya so-ddmku     28878 Mar 30 16:28 ERX202411.pmd
-rw-r--r-- 1 okishinya so-ddmku   9302531 Mar 30 16:28 ERX202411.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 113602484 Mar 30 16:32 ERX202411.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  78506493 Mar 30 16:30 ERX202411.cpg.methyl.bw

=-=-=num_reads	29128069
=-=-=mapping_rate_1	0.894
=-=-=mapping_rate_2	0.84
=-=-=methyl_rate_cpg_total	0.549
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	26152
=-=-=partial_methyl_region	1210
=-=-=high_methyl_region	388057
=-=-=coverage	1.11688
=-=-=end	210330_16:32:19
=-=-=duration	1.688