Job ID = 12237273
SRX = ERX202410
Genome = rm6
Started at	210330_14:50:59

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 28842668 spots for ERR227751/ERR227751.sra
Written 28842668 spots for ERR227751/ERR227751.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2306833067 Mar 30 14:54 ERR227751_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2225967399 Mar 30 14:54 ERR227751_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX202410.sum.gz
 output alignment file  :ERX202410.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 53497 ms)
 -FM-Index for g2a genome.... finished (elapsed: 109325 ms)
 -suffix array for c2t genome.... finished (elapsed: 121966 ms)
 -suffix array for g2a genome.... finished (elapsed: 136211 ms)
 -reference sequence.... finished (elapsed: 137176 ms)
Index loading finished.
File(s) loaded: ERR227751_1.fastq.gz, ERR227751_2.fastq.gz.
Time elapsed:2856448 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/ERX202410’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 4086643007 Mar 30 15:46 ERX202410.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  545472217 Mar 30 15:46 ERX202410.sum.gz
ERX202410.sum.gz was set to analysis list.
Analyzing ERX202410.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       5828 Mar 30 15:52 ERX202410.mapsum.html
Processing "ERX202410.bisulalign.gz" (4086643007 bytes)
**********: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918757 Mar 30 15:57 ERX202410.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      553102 Mar 30 16:04 ERX202410.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :ERX202410.graph
Output File (methyl)    :ERX202410.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX202410.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX202410.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   223853342 Mar 30 16:17 ERX202410.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    65515791 Mar 30 16:17 ERX202410.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   241902814 Mar 30 16:17 ERX202410.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    588020 Mar 30 16:43 ERX202410.hmr
-rw-r--r-- 1 okishinya so-ddmku     19205 Mar 30 16:43 ERX202410.pmd
-rw-r--r-- 1 okishinya so-ddmku   9242531 Mar 30 16:43 ERX202410.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 111803474 Mar 30 16:46 ERX202410.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  98840877 Mar 30 16:45 ERX202410.cpg.methyl.bw

=-=-=num_reads	28842665
=-=-=mapping_rate_1	0.865
=-=-=mapping_rate_2	0.833
=-=-=methyl_rate_cpg_total	0.523
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	24562
=-=-=partial_methyl_region	802
=-=-=high_methyl_region	385632
=-=-=coverage	1.35173
=-=-=end	210330_16:47:02
=-=-=duration	1.934