#!/bin/sh
#$ -S /bin/sh
# sh chipatlas/sh/makePeakBrowser/sortAll.sh mm10 05
genome=$1
type=$2

outDir=tmpDirForPeakBrowser/sortedBed/$genome
mkdir $outDir
echo tmpDirForPeakBrowser/sortByChr/$genome/$type/*| tr ' ' '\n'| sort -k1,1| xargs cat > $outDir/$genome.$type.bed
if [ $type = "20" ]; then
  cat $outDir/$genome.$type.bed| awk '$5 >= 500' > $outDir/$genome.50.bed
fi
exit