ChIP-Atlas: Target genes

Potential target genes for CPSF3

Query protein: CPSF3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5441331 | HeLa
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
CPSF3's Target genes

◢ CPSF3: Average

◢ SRX8018228: 293

◢ SRX8018229: 293

◢ SRX8018230: 293

◢ SRX8018231: 293

◢ SRX5441330: HeLa

◣ SRX5441331: HeLa

◢ SRX5441334: HeLa

◢ SRX5441335: HeLa

◢ CPSF3: STRING

RABL2B
ZNF335
RABL2A
TSN
SRD5A1
NSUN2
MAPKAPK5
DYNC1LI2
NVL
CACTIN
ICE1
NUP85
PSMD12
MRPS7
MIF4GD
GGA3
POLR3F
DZANK1
VDAC2
GOSR2
S1PR4
NCLN
REXO1
OAZ3
C19orf48
HSPA9
NNAT
BLCAP
NME6
IPO13
POLR2E
GPX4
SUCLG1
TAOK3
SUDS3
UBE2I
CAPRIN1
EXOSC5
BCKDHA
SLC35B1
ZNF576
IRGQ
FAM187A
EFTUD2
CCDC103
RWDD1
MRPS5
ACTR10
RBBP5
COX7A2L
VTI1B
PSMD1
DCTN1
CDC73
PES1
SEC61B
COMMD1
CCT4
SART3
ISCU
RABGGTB
HADHB
HADHA
UPF2
LYRM4
FARS2
TSNAX
PSMG2
CEP76
FARSB
NDUFA4
PDAP1
BUD31
STAM
MRPL11
PI4KB
SUPV3L1
NUP205
STAM2
SKP1
PNO1
MTRNR2L1
USP1
RPL21
ZRANB2
IER3
FLOT1
PAK1IP1
C6orf52
ATP5MG
PHF23
GABARAP
DVL2
SELENOF
HS2ST1
GOLGA5
VPS52
RPS18
B3GALT4
VARS1
GADD45GIP1
HSPA1B
MYC
RPL26
KRBA2
TAF9
RAD17
AK6
ANAPC7
PTGES2
ZWILCH
SNAPC5
RPL4
EIF2S3
RPS27A
CLHC1
PDHX
APIP
NFKBIL1
DDX39B
ATP6V1G2
AXDND1
MTRNR2L8
SFI1
EIF4ENIF1
MRTO4
EMC1
SMC2
MAMDC2
PIN4
ZC3H10
RPL41
ESYT1
TTC8
RPL35A
LMLN
IQCG
TMED1
ZBTB37
TM9SF1
IPO4
TSSK4
RPS11
RPL13A
C6orf226
RPS23
ATP6AP1L
TM4SF1
WDR74
SLC3A2
VPS28
H4C14
H3C15
H3C14
H2AC19
H2AC18
PCBP1
ATP5F1E
PRELID3B
ADK
AP3M1
H4C15
RPL27A
DPH6
MAT2A
SF3B3
COG4
SCRIB
H2BC4
H2AC6
OR6B2
NDUFA10
RXYLT1
SUMF2
ATP6V0C
AMDHD2
BICRA
SYCE2
RBKS
BABAM2
NRAS
TRIM65
MRPL38
H4C12
H4C11
H2BC15
H2AC15
EIF4A2
RPL22L1
H2BC14
H2AC14
RPS12
PTPN6
C12orf57
ATN1
GLRX2
DENR
UFM1
STX5
XPNPEP3
ST13
DNAJB7
PEAK3
OAZ1
DGKZ
RPL17-C18orf32
RPL17
C18orf32
SHC1
PYGO2
PBXIP1
LOC101928120
FAM104A
C17orf80
C6orf47
BAG6
APOM
PACSIN3
ARFGAP2
MPDU1
LOC100996842
EIF4A1
CD68
MED1
CDK12
DDIT4
EDC4
RPS5
RNF225
PAF1
MED29
HDGF
MRPL24
GORAB
P4HB
ARHGDIA
DUX4
RPN1
PROSER1
NHLRC3
SYNRG
RBM39
PCBD2
ANKLE2
ALKBH5
H4C3
H1-6
MTRNR2L2
MSH3
DHFR
PTMA
RPL37
GTF3C4
DDX31
H3C3
H1-2
UBE2M
CHMP2A
MRPS16
DNAJC9
GET4
RPS2
RPL3L
RNF151
NDUFB10
H2BC21
H2AC21
H2AC20
RNASEK
C17orf49
BCL6B
H2BC5
H1-4
EXOSC6
PRKAG1
ABTB1
WDR46
RGL2
PFDN6
PRDX2
JUNB
MSH5
MPIG6B
LY6G6C
DDAH2
CLIC1
RPL12
LRSAM1
SIRT7
PCYT2
MAFG
LAMP1
INPP5E
RPS29
LRR1
SRSF11
LRRC40
ZNF34
RPL8
ZNF276
VPS9D1
TBCK
AIMP1
SYNGAP1
PHF1
CUTA
CIRBP
MRPL2
KLC4
CUL7
NFE2
HNRNPA1
CBX5
CMTR1
RPL7
RDH10
NDST2
CISD3
RPL3
POLG2
DDX5
CEP95
STK36
RNF25
FAM131A
ZCWPW1
PPP1R35
MEPCE
EPN1
PRRT2
MAZ
PAGR1
MVP
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
CNPY2
BNIP3
RIT1
TUBB
MDC1
RPL10
DNASE1L1
RGS14
LMAN2
VARS2
GTF2H4
RHBDL1
RHOT2
PRKRIP1
SPHK2
SPACA4
RPL18
FAM83E
RPS10-NUDT3
RPS10
MRI1
C19orf53
ID3
SURF6
NAPRT
MROH6
TRAP1
PFDN5
MYG1
ZBTB45
SLC27A5
ZNF581
ZNF580
CCDC106
FADD
NRIP1
TTYH2
RPL38
TSC22D1
BTBD10
TTC33
RAD23A
CALR
GPAA1
EXOSC4
ZNF585B
ZNF383
SGK1
SLC25A11
RNF167
PFN1
ENO3
PPP1R10
MRPS18B
ATAT1
MSH4
TIMM13
RPL19
CACNB1
RRP36
MEA1
CCDC34
POLDIP3
TMEM79
SMG5
SEC11C
H2AZ1
DNAJB14
WDR90
MCRIP2
FLYWCH1
RPL6
RICTOR
FOXD3
AGAP11
ADIRF
RPLP0
GCN1
EEF1A1
LOC105372440
ACP4
HOXA3
HMCES
RACK1
SLC39A13
HOXA6
HOXA5
MOV10
ARHGAP11A-SCG5
ARHGAP11A
MMP24OS
MMP24-AS1-EDEM2
EIF6
PIP4P1
OSGEP
APEX1
C19orf71
MRM1
DHRS11
TMPPE
GLB1
RPL13
CPNE7
CD320
RCOR3
ID1
CLUAP1
C16orf90
SECISBP2
CKS2
POLR2J3
ARF3
SPCS1
GLT8D1
ECI1
POLD1
NR1H2
SF3A3
HES7
ALOXE3
FUT11
CHCHD1
NAA10
ARHGAP4
SMIM22
ROGDI
DPH7
TMSB10
NOP53
LRRC37A3
VWA7
ACTB
VIM
H4C8
PPARA
MRPL34
DDA1
ABHD8
SLC35E3
ATXN2
CENPBD1
TSEN54
LLGL2
CASKIN2
H4-16
H2AJ
LRRC24
C8orf82
RECQL4
LRRC14
STYXL1
MDH2
ELP5
CTDNEP1
MOGS
MRPL53
SLC25A10
MRPL12
FTH1
BEST1
H3C13
H2BC18
TUBGCP6
HDAC10
WDR24
STUB1
JMJD8
GGA2
PRDM10
NAT10
JMJD7-PLA2G4B
JMJD7
CELF1
CD79A
TSKU
GP1BA
TRIP4
PCLAF
STRIP1
RHOB
POMZP3
TXNRD2
COMT
ZMIZ2
HCN2
PSMD5
SCAMP3
FAM189B
GNG14
DHPS
WDR6
FAM174C
NDUFAF3
DALRD3
CCAR2
C8orf58
H4C13
H3C11
H2AC16
H1-5
CYBA
SLC26A11
TBC1D13
GPS2
EIF5A
DBP
BAZ2A
NDUFS3
KBTBD4
FAM180B
ATP5F1B
TRIP6
SRRT
NDUFS7
NUF2
MAP2K2
LDHC
ABHD17A
ARHGEF1
PUF60
COMMD2
TMEM107
ARL4D
PNMA1
H4C2
H3C2
H2AC4
TOB1
CARD6
H4C9
H2BC11
H2AC11
MRPL40
HIRA
GTF2IRD2B
GTF2IRD2
ADPRHL1
SLC39A7
RXRB
RING1
HSD17B8
CRELD1
SIGMAR1
ARID3C
H4C1
H3C1
H1-1
NOP14
GRK4
DRAP1
C11orf68
LIFR
SIX5
DMPK
NECAB3
ACTL10
SELENOH
TSPAN10
NPLOC4
CDK11B
CDK11A
ABCB6
TFAP2A
XRN1
PDCD6
ERCC1
NOP56
GNG3
BSCL2
TUBA1B
IDH3B
DPY19L4
LRP6
CS
TCHP
C5orf24
TATDN3
NSL1
NPAS4
NUDT1
MRM2
MAD1L1
RCE1
NDUFA4L2
WDR70
NUP155
SHMT2
MAPK8IP3
TMEM43
CHCHD4
SCAP
PAIP1
CBX4
POLR2J
ARHGAP12
GRAMD2A
ZNF446
ZNF324
STOML2
PIGO
AURKAIP1
ISG20
ZNF653
GPN2
GAPDH
GFAP
ERGIC2
LBR
HNRNPU
ZNF341
RNF166
CTU2
H2BC12
H2AC12
FLOT2
DHRS13
ZFP36
PLEKHG2
CHD2
SDE2
C7orf26
TMEM250
PPIB
ZNF770
SNX22
TAOK2
PMF1-BGLAP
PMF1
TRIP13
BRD9
SDHA
CCDC127
AKAP8
NXF1
DNAJB12
ABCF1
CCDC138
TMEM267
FBXW9
VPS50
HEPACAM2
KIF2C
CTDSP1
MRPS34
EME2
NFAT5
NME3
NCBP3
SPSB3
THOC5
DIDO1
SMN2
SMN1
TRAPPC9
SCAMP5
SHTN1
SSBP1
ERCC6L2
CSNK1G1
SRF
CUL9
MATR3
PAOX
ECHS1
TAF12
GOLM2
WDR47
TMEM39B
SLC16A3
H4C5
H3C4
H2BC7
H2AC7
CHD8
BCAP29
POLR2C
PCBP2
EHMT1
TUBA1C
TMSB4X
PACS1
GBA
SLC39A1
CRTC2
CREB3L4
RAB5B
PMEL
CDK2
C16orf46
COX20
ZDHHC23
RUVBL1
EEFSEC
ASXL1
MTF2
MARCHF6
CCDC43
TOM1
SETD1A
ORAI3
PURA
ANKFY1
SPATA25
NEURL2
CTSA
HPS6
ARMH3
NELFA
GSTA4
ZSWIM1
URM1
CTNNB1
DSTYK
TOMM20
SMDT1
PHETA2
NAGA
GRB2
MYO18A
LPCAT1
CCDC86
THEM4
IREB2
TRMT2A
RANBP1
ZNF511
TUBGCP2
SMIM29
HMGA1
EIF2D
NME4
DECR2
TXN2
GADD45B
SPATC1L
GAA
GPANK1
CSNK2B
MTIF2
RAB3IL1
LY6G5B
OTUD7B
MEMO1
TMED9
B4GALT7
TMEM262
SKA3
MRPL57
ROPN1L
TLCD1
RPL23A
RAB34
NEK8
PTCD1
CPSF4
FHL3
LRRC59
CDC5L
MDM4
RAC3
DCXR
TAF2
SLC15A4
RMI1
HNRNPK
PHF2
TCF3
AHRR
ADM
OSMR
NOLC1
HAGHL
CCDC78
ANTKMT
METRN
DRG2
NOP2
TOMM6
PRICKLE4
FRS3
EXOC3
ATG4D
PDCL3
NPR1
ILF2
CYB561D1
ATXN7L2
RAD9A
PPP1CA
MAPKBP1
EIF3F
MRPS23
ULK3
SLC39A4
CPSF1
SEMA4A
HYAL1
NAA80
IFRD2
HYAL3
CYRIB
PCBP4
ABHD14B
ABHD14A-ACY1
ABHD14A
CHD1L
NDUFB2
PRKAB2
NT5C
TRAF4
KRT8
KRT18
PPIA
TAS1R1
NOL9
TRAF7
RAB26
SLURP1
RPS28
NDUFA7
UBE2H
FBF1
GPX1
TRIM37
WDR31
BSPRY
RPP40
ZNF286A
BRIX1
ZC3H12A
BHLHE40
NSFL1C
KLHL12
TGOLN2
PPP1R1B
ICMT
HES3
CLCN7
NEUROD2
SLC29A1
MYMX
TNFRSF12A
THOC6
HCFC1R1
CLDN6
JOSD2
ASPDH
ZNF358
MCOLN1
GSTO2
TSFM
TMEM139
CASP2
RNPS1
VEZF1
SNAP47
JMJD4
EAPP
CALM1
KLHL15
MADD
AGL
AFF4
ZNF76
SLC50A1
EFNA1
DPM3
BAX
CLPTM1L
CYB561
GNE
ZNF583
GATD3B
GATD3A
USP21
UFC1
PPOX
CSRNP2
DCP1A
RDH5
CD63
HASPIN
IRF9
SSX2IP
ANKRD13C
SCNN1A
LTBR
ENDOV
NOTCH2
EIF4H
HMGB1
USPL1
TDP2
ACOT13
SFXN4
SYT7
GABPB2
ARL17B
RSAD1
CHAD
RIPK1
RPLP1
WDR11
EPHB4
MAN2C1
CCDC130
CEP350
AKAP1
H3C8
H2BC10
SLC45A4
PABPN1
UPF3A
PDPK1
CEMP1
FKBP5
ABCF3
RBL1
RPSA
SIRT4
SNTB2
NOC3L
FOSL1
FIBP
CCDC85B
AGO3
SUGCT
MPLKIP
CD22
ROM1
EML3
B3GAT3
TMEM223
TMEM179B
RABIF
AMZ2
GADD45A
ATAD2
KDM6B
FAM162A
CCDC58
TMEM170A
RPL27
IFI35
WASHC2A
PRSS8
HNRNPA1L2
CFD
RPS26
CXorf38
PRDX1
RELA
CIAO3
NR4A1
CLDN15
FIS1
RGS20
ATP6V1H
TRIOBP
DNAJC25-GNG10
DNAJC25
ENOSF1
NAA60
NPY4R