Job ID = 6368900 SRX = SRX6619602 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:37:49 prefetch.2.10.7: 1) Downloading 'SRR9866007'... 2020-06-16T00:37:49 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:50:56 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:50:56 prefetch.2.10.7: 1) 'SRR9866007' was downloaded successfully 2020-06-16T00:50:56 prefetch.2.10.7: 'SRR9866007' has 0 unresolved dependencies Read 38292397 spots for SRR9866007/SRR9866007.sra Written 38292397 spots for SRR9866007/SRR9866007.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:10:43 38292397 reads; of these: 38292397 (100.00%) were paired; of these: 16181506 (42.26%) aligned concordantly 0 times 18505547 (48.33%) aligned concordantly exactly 1 time 3605344 (9.42%) aligned concordantly >1 times ---- 16181506 pairs aligned concordantly 0 times; of these: 6467386 (39.97%) aligned discordantly 1 time ---- 9714120 pairs aligned 0 times concordantly or discordantly; of these: 19428240 mates make up the pairs; of these: 16690927 (85.91%) aligned 0 times 924728 (4.76%) aligned exactly 1 time 1812585 (9.33%) aligned >1 times 78.21% overall alignment rate Time searching: 01:10:43 Overall time: 01:10:43 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 44 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 4425547 / 28353627 = 0.1561 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:33:32: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619602/SRX6619602.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619602/SRX6619602.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619602/SRX6619602.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619602/SRX6619602.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:33:32: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:33:32: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:33:39: 1000000 INFO @ Tue, 16 Jun 2020 11:33:46: 2000000 INFO @ Tue, 16 Jun 2020 11:33:52: 3000000 INFO @ Tue, 16 Jun 2020 11:33:59: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:34:02: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619602/SRX6619602.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619602/SRX6619602.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619602/SRX6619602.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619602/SRX6619602.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:34:02: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:34:02: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:34:06: 5000000 INFO @ Tue, 16 Jun 2020 11:34:10: 1000000 INFO @ Tue, 16 Jun 2020 11:34:13: 6000000 INFO @ Tue, 16 Jun 2020 11:34:18: 2000000 INFO @ Tue, 16 Jun 2020 11:34:21: 7000000 INFO @ Tue, 16 Jun 2020 11:34:25: 3000000 INFO @ Tue, 16 Jun 2020 11:34:28: 8000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:34:32: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619602/SRX6619602.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619602/SRX6619602.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619602/SRX6619602.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619602/SRX6619602.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:34:32: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:34:32: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:34:33: 4000000 INFO @ Tue, 16 Jun 2020 11:34:35: 9000000 INFO @ Tue, 16 Jun 2020 11:34:40: 1000000 INFO @ Tue, 16 Jun 2020 11:34:41: 5000000 INFO @ Tue, 16 Jun 2020 11:34:42: 10000000 INFO @ Tue, 16 Jun 2020 11:34:48: 2000000 INFO @ Tue, 16 Jun 2020 11:34:49: 6000000 INFO @ Tue, 16 Jun 2020 11:34:50: 11000000 INFO @ Tue, 16 Jun 2020 11:34:56: 3000000 INFO @ Tue, 16 Jun 2020 11:34:57: 12000000 INFO @ Tue, 16 Jun 2020 11:34:57: 7000000 INFO @ Tue, 16 Jun 2020 11:35:04: 13000000 INFO @ Tue, 16 Jun 2020 11:35:04: 4000000 INFO @ Tue, 16 Jun 2020 11:35:05: 8000000 INFO @ Tue, 16 Jun 2020 11:35:11: 14000000 INFO @ Tue, 16 Jun 2020 11:35:12: 5000000 INFO @ Tue, 16 Jun 2020 11:35:13: 9000000 INFO @ Tue, 16 Jun 2020 11:35:18: 15000000 INFO @ Tue, 16 Jun 2020 11:35:21: 6000000 INFO @ Tue, 16 Jun 2020 11:35:21: 10000000 INFO @ Tue, 16 Jun 2020 11:35:25: 16000000 INFO @ Tue, 16 Jun 2020 11:35:29: 11000000 INFO @ Tue, 16 Jun 2020 11:35:29: 7000000 INFO @ Tue, 16 Jun 2020 11:35:32: 17000000 INFO @ Tue, 16 Jun 2020 11:35:37: 12000000 INFO @ Tue, 16 Jun 2020 11:35:37: 8000000 INFO @ Tue, 16 Jun 2020 11:35:39: 18000000 INFO @ Tue, 16 Jun 2020 11:35:45: 13000000 INFO @ Tue, 16 Jun 2020 11:35:45: 9000000 INFO @ Tue, 16 Jun 2020 11:35:46: 19000000 INFO @ Tue, 16 Jun 2020 11:35:53: 14000000 INFO @ Tue, 16 Jun 2020 11:35:53: 20000000 INFO @ Tue, 16 Jun 2020 11:35:54: 10000000 INFO @ Tue, 16 Jun 2020 11:36:00: 21000000 INFO @ Tue, 16 Jun 2020 11:36:01: 15000000 INFO @ Tue, 16 Jun 2020 11:36:02: 11000000 INFO @ Tue, 16 Jun 2020 11:36:07: 22000000 INFO @ Tue, 16 Jun 2020 11:36:09: 16000000 INFO @ Tue, 16 Jun 2020 11:36:10: 12000000 INFO @ Tue, 16 Jun 2020 11:36:15: 23000000 INFO @ Tue, 16 Jun 2020 11:36:17: 17000000 INFO @ Tue, 16 Jun 2020 11:36:18: 13000000 INFO @ Tue, 16 Jun 2020 11:36:22: 24000000 INFO @ Tue, 16 Jun 2020 11:36:26: 18000000 INFO @ Tue, 16 Jun 2020 11:36:26: 14000000 INFO @ Tue, 16 Jun 2020 11:36:29: 25000000 INFO @ Tue, 16 Jun 2020 11:36:33: 15000000 INFO @ Tue, 16 Jun 2020 11:36:34: 19000000 INFO @ Tue, 16 Jun 2020 11:36:36: 26000000 INFO @ Tue, 16 Jun 2020 11:36:41: 16000000 INFO @ Tue, 16 Jun 2020 11:36:42: 20000000 INFO @ Tue, 16 Jun 2020 11:36:43: 27000000 INFO @ Tue, 16 Jun 2020 11:36:49: 17000000 INFO @ Tue, 16 Jun 2020 11:36:50: 28000000 INFO @ Tue, 16 Jun 2020 11:36:51: 21000000 INFO @ Tue, 16 Jun 2020 11:36:57: 18000000 INFO @ Tue, 16 Jun 2020 11:36:57: 29000000 INFO @ Tue, 16 Jun 2020 11:36:59: 22000000 INFO @ Tue, 16 Jun 2020 11:37:04: 30000000 INFO @ Tue, 16 Jun 2020 11:37:05: 19000000 INFO @ Tue, 16 Jun 2020 11:37:07: 23000000 INFO @ Tue, 16 Jun 2020 11:37:11: 31000000 INFO @ Tue, 16 Jun 2020 11:37:13: 20000000 INFO @ Tue, 16 Jun 2020 11:37:16: 24000000 INFO @ Tue, 16 Jun 2020 11:37:18: 32000000 INFO @ Tue, 16 Jun 2020 11:37:21: 21000000 INFO @ Tue, 16 Jun 2020 11:37:24: 25000000 INFO @ Tue, 16 Jun 2020 11:37:25: 33000000 INFO @ Tue, 16 Jun 2020 11:37:29: 22000000 INFO @ Tue, 16 Jun 2020 11:37:31: 34000000 INFO @ Tue, 16 Jun 2020 11:37:32: 26000000 INFO @ Tue, 16 Jun 2020 11:37:37: 23000000 INFO @ Tue, 16 Jun 2020 11:37:38: 35000000 INFO @ Tue, 16 Jun 2020 11:37:40: 27000000 INFO @ Tue, 16 Jun 2020 11:37:45: 36000000 INFO @ Tue, 16 Jun 2020 11:37:45: 24000000 INFO @ Tue, 16 Jun 2020 11:37:48: 28000000 INFO @ Tue, 16 Jun 2020 11:37:52: 37000000 INFO @ Tue, 16 Jun 2020 11:37:54: 25000000 INFO @ Tue, 16 Jun 2020 11:37:56: 29000000 INFO @ Tue, 16 Jun 2020 11:37:58: 38000000 INFO @ Tue, 16 Jun 2020 11:38:01: 26000000 INFO @ Tue, 16 Jun 2020 11:38:04: 30000000 INFO @ Tue, 16 Jun 2020 11:38:05: 39000000 INFO @ Tue, 16 Jun 2020 11:38:09: 27000000 INFO @ Tue, 16 Jun 2020 11:38:11: 31000000 INFO @ Tue, 16 Jun 2020 11:38:12: 40000000 INFO @ Tue, 16 Jun 2020 11:38:17: 28000000 INFO @ Tue, 16 Jun 2020 11:38:18: 41000000 INFO @ Tue, 16 Jun 2020 11:38:19: 32000000 INFO @ Tue, 16 Jun 2020 11:38:25: 29000000 INFO @ Tue, 16 Jun 2020 11:38:25: 42000000 INFO @ Tue, 16 Jun 2020 11:38:27: 33000000 INFO @ Tue, 16 Jun 2020 11:38:32: 43000000 INFO @ Tue, 16 Jun 2020 11:38:33: 30000000 INFO @ Tue, 16 Jun 2020 11:38:35: 34000000 INFO @ Tue, 16 Jun 2020 11:38:39: 44000000 INFO @ Tue, 16 Jun 2020 11:38:40: 31000000 INFO @ Tue, 16 Jun 2020 11:38:42: 35000000 INFO @ Tue, 16 Jun 2020 11:38:45: 45000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:38:48: 32000000 INFO @ Tue, 16 Jun 2020 11:38:51: 36000000 INFO @ Tue, 16 Jun 2020 11:38:52: 46000000 INFO @ Tue, 16 Jun 2020 11:38:56: 33000000 INFO @ Tue, 16 Jun 2020 11:38:59: 47000000 INFO @ Tue, 16 Jun 2020 11:38:59: 37000000 INFO @ Tue, 16 Jun 2020 11:39:04: 34000000 INFO @ Tue, 16 Jun 2020 11:39:05: 48000000 INFO @ Tue, 16 Jun 2020 11:39:07: 38000000 INFO @ Tue, 16 Jun 2020 11:39:12: 49000000 INFO @ Tue, 16 Jun 2020 11:39:12: 35000000 INFO @ Tue, 16 Jun 2020 11:39:15: 39000000 INFO @ Tue, 16 Jun 2020 11:39:18: 50000000 INFO @ Tue, 16 Jun 2020 11:39:19: 36000000 INFO @ Tue, 16 Jun 2020 11:39:22: 40000000 INFO @ Tue, 16 Jun 2020 11:39:25: 51000000 INFO @ Tue, 16 Jun 2020 11:39:25: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:39:25: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:39:25: #1 total tags in treatment: 18579104 INFO @ Tue, 16 Jun 2020 11:39:25: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:39:25: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:39:26: #1 tags after filtering in treatment: 15685441 INFO @ Tue, 16 Jun 2020 11:39:26: #1 Redundant rate of treatment: 0.16 INFO @ Tue, 16 Jun 2020 11:39:26: #1 finished! INFO @ Tue, 16 Jun 2020 11:39:26: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:39:26: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:39:27: #2 number of paired peaks: 314 WARNING @ Tue, 16 Jun 2020 11:39:27: Fewer paired peaks (314) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 314 pairs to build model! INFO @ Tue, 16 Jun 2020 11:39:27: start model_add_line... INFO @ Tue, 16 Jun 2020 11:39:27: start X-correlation... INFO @ Tue, 16 Jun 2020 11:39:27: end of X-cor INFO @ Tue, 16 Jun 2020 11:39:27: #2 finished! INFO @ Tue, 16 Jun 2020 11:39:27: #2 predicted fragment length is 214 bps INFO @ Tue, 16 Jun 2020 11:39:27: #2 alternative fragment length(s) may be 214 bps INFO @ Tue, 16 Jun 2020 11:39:27: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619602/SRX6619602.05_model.r WARNING @ Tue, 16 Jun 2020 11:39:27: #2 Since the d (214) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:39:27: #2 You may need to consider one of the other alternative d(s): 214 WARNING @ Tue, 16 Jun 2020 11:39:27: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:39:27: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:39:27: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:39:27: 37000000 INFO @ Tue, 16 Jun 2020 11:39:30: 41000000 INFO @ Tue, 16 Jun 2020 11:39:35: 38000000 INFO @ Tue, 16 Jun 2020 11:39:38: 42000000 INFO @ Tue, 16 Jun 2020 11:39:43: 39000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:39:46: 43000000 INFO @ Tue, 16 Jun 2020 11:39:51: 40000000 INFO @ Tue, 16 Jun 2020 11:39:54: 44000000 INFO @ Tue, 16 Jun 2020 11:39:59: 41000000 INFO @ Tue, 16 Jun 2020 11:39:59: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:40:02: 45000000 INFO @ Tue, 16 Jun 2020 11:40:07: 42000000 INFO @ Tue, 16 Jun 2020 11:40:10: 46000000 INFO @ Tue, 16 Jun 2020 11:40:15: 43000000 INFO @ Tue, 16 Jun 2020 11:40:16: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619602/SRX6619602.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:40:16: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619602/SRX6619602.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:40:16: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619602/SRX6619602.05_summits.bed INFO @ Tue, 16 Jun 2020 11:40:16: Done! pass1 - making usageList (7 chroms): 3 millis pass2 - checking and writing primary data (24985 records, 4 fields): 22 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:40:19: 47000000 INFO @ Tue, 16 Jun 2020 11:40:24: 44000000 INFO @ Tue, 16 Jun 2020 11:40:27: 48000000 INFO @ Tue, 16 Jun 2020 11:40:32: 45000000 INFO @ Tue, 16 Jun 2020 11:40:35: 49000000 INFO @ Tue, 16 Jun 2020 11:40:40: 46000000 INFO @ Tue, 16 Jun 2020 11:40:43: 50000000 INFO @ Tue, 16 Jun 2020 11:40:49: 47000000 INFO @ Tue, 16 Jun 2020 11:40:52: 51000000 INFO @ Tue, 16 Jun 2020 11:40:52: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:40:52: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:40:52: #1 total tags in treatment: 18579104 INFO @ Tue, 16 Jun 2020 11:40:52: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:40:52: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:40:53: #1 tags after filtering in treatment: 15685441 INFO @ Tue, 16 Jun 2020 11:40:53: #1 Redundant rate of treatment: 0.16 INFO @ Tue, 16 Jun 2020 11:40:53: #1 finished! INFO @ Tue, 16 Jun 2020 11:40:53: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:40:53: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:40:54: #2 number of paired peaks: 314 WARNING @ Tue, 16 Jun 2020 11:40:54: Fewer paired peaks (314) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 314 pairs to build model! INFO @ Tue, 16 Jun 2020 11:40:54: start model_add_line... INFO @ Tue, 16 Jun 2020 11:40:54: start X-correlation... INFO @ Tue, 16 Jun 2020 11:40:54: end of X-cor INFO @ Tue, 16 Jun 2020 11:40:54: #2 finished! INFO @ Tue, 16 Jun 2020 11:40:54: #2 predicted fragment length is 214 bps INFO @ Tue, 16 Jun 2020 11:40:54: #2 alternative fragment length(s) may be 214 bps INFO @ Tue, 16 Jun 2020 11:40:54: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619602/SRX6619602.10_model.r WARNING @ Tue, 16 Jun 2020 11:40:54: #2 Since the d (214) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:40:54: #2 You may need to consider one of the other alternative d(s): 214 WARNING @ Tue, 16 Jun 2020 11:40:54: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:40:54: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:40:54: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:40:58: 48000000 INFO @ Tue, 16 Jun 2020 11:41:06: 49000000 INFO @ Tue, 16 Jun 2020 11:41:15: 50000000 INFO @ Tue, 16 Jun 2020 11:41:23: 51000000 INFO @ Tue, 16 Jun 2020 11:41:24: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:41:24: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:41:24: #1 total tags in treatment: 18579104 INFO @ Tue, 16 Jun 2020 11:41:24: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:41:24: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:41:24: #1 tags after filtering in treatment: 15685441 INFO @ Tue, 16 Jun 2020 11:41:24: #1 Redundant rate of treatment: 0.16 INFO @ Tue, 16 Jun 2020 11:41:24: #1 finished! INFO @ Tue, 16 Jun 2020 11:41:24: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:41:24: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:41:25: #2 number of paired peaks: 314 WARNING @ Tue, 16 Jun 2020 11:41:25: Fewer paired peaks (314) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 314 pairs to build model! INFO @ Tue, 16 Jun 2020 11:41:25: start model_add_line... INFO @ Tue, 16 Jun 2020 11:41:25: start X-correlation... INFO @ Tue, 16 Jun 2020 11:41:25: end of X-cor INFO @ Tue, 16 Jun 2020 11:41:25: #2 finished! INFO @ Tue, 16 Jun 2020 11:41:25: #2 predicted fragment length is 214 bps INFO @ Tue, 16 Jun 2020 11:41:25: #2 alternative fragment length(s) may be 214 bps INFO @ Tue, 16 Jun 2020 11:41:25: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619602/SRX6619602.20_model.r WARNING @ Tue, 16 Jun 2020 11:41:25: #2 Since the d (214) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:41:25: #2 You may need to consider one of the other alternative d(s): 214 WARNING @ Tue, 16 Jun 2020 11:41:25: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:41:25: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:41:25: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:41:26: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:41:42: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619602/SRX6619602.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:41:42: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619602/SRX6619602.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:41:42: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619602/SRX6619602.10_summits.bed INFO @ Tue, 16 Jun 2020 11:41:42: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (11322 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:41:57: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:42:13: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619602/SRX6619602.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:42:13: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619602/SRX6619602.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:42:13: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619602/SRX6619602.20_summits.bed INFO @ Tue, 16 Jun 2020 11:42:13: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (1366 records, 4 fields): 3 millis CompletedMACS2peakCalling