Job ID = 6368898 SRX = SRX6619600 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:40:14 prefetch.2.10.7: 1) Downloading 'SRR9866009'... 2020-06-16T00:40:14 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:53:35 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:53:35 prefetch.2.10.7: 1) 'SRR9866009' was downloaded successfully 2020-06-16T00:53:36 prefetch.2.10.7: 'SRR9866009' has 0 unresolved dependencies Read 34322942 spots for SRR9866009/SRR9866009.sra Written 34322942 spots for SRR9866009/SRR9866009.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:08:02 34322942 reads; of these: 34322942 (100.00%) were paired; of these: 17169672 (50.02%) aligned concordantly 0 times 14463668 (42.14%) aligned concordantly exactly 1 time 2689602 (7.84%) aligned concordantly >1 times ---- 17169672 pairs aligned concordantly 0 times; of these: 10087773 (58.75%) aligned discordantly 1 time ---- 7081899 pairs aligned 0 times concordantly or discordantly; of these: 14163798 mates make up the pairs; of these: 10598396 (74.83%) aligned 0 times 1735514 (12.25%) aligned exactly 1 time 1829888 (12.92%) aligned >1 times 84.56% overall alignment rate Time searching: 01:08:02 Overall time: 01:08:02 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 44 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 4246347 / 26393883 = 0.1609 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:33:10: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619600/SRX6619600.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619600/SRX6619600.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619600/SRX6619600.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619600/SRX6619600.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:33:10: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:33:10: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:33:20: 1000000 INFO @ Tue, 16 Jun 2020 11:33:29: 2000000 INFO @ Tue, 16 Jun 2020 11:33:38: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:33:40: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619600/SRX6619600.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619600/SRX6619600.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619600/SRX6619600.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619600/SRX6619600.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:33:40: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:33:40: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:33:48: 4000000 INFO @ Tue, 16 Jun 2020 11:33:51: 1000000 INFO @ Tue, 16 Jun 2020 11:33:58: 5000000 INFO @ Tue, 16 Jun 2020 11:34:02: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:34:09: 6000000 INFO @ Tue, 16 Jun 2020 11:34:10: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619600/SRX6619600.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619600/SRX6619600.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619600/SRX6619600.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619600/SRX6619600.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:34:10: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:34:10: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:34:13: 3000000 INFO @ Tue, 16 Jun 2020 11:34:20: 7000000 INFO @ Tue, 16 Jun 2020 11:34:22: 1000000 INFO @ Tue, 16 Jun 2020 11:34:24: 4000000 INFO @ Tue, 16 Jun 2020 11:34:30: 8000000 INFO @ Tue, 16 Jun 2020 11:34:33: 2000000 INFO @ Tue, 16 Jun 2020 11:34:35: 5000000 INFO @ Tue, 16 Jun 2020 11:34:41: 9000000 INFO @ Tue, 16 Jun 2020 11:34:44: 3000000 INFO @ Tue, 16 Jun 2020 11:34:47: 6000000 INFO @ Tue, 16 Jun 2020 11:34:51: 10000000 INFO @ Tue, 16 Jun 2020 11:34:55: 4000000 INFO @ Tue, 16 Jun 2020 11:34:58: 7000000 INFO @ Tue, 16 Jun 2020 11:35:02: 11000000 INFO @ Tue, 16 Jun 2020 11:35:06: 5000000 INFO @ Tue, 16 Jun 2020 11:35:09: 8000000 INFO @ Tue, 16 Jun 2020 11:35:13: 12000000 INFO @ Tue, 16 Jun 2020 11:35:17: 6000000 INFO @ Tue, 16 Jun 2020 11:35:20: 9000000 INFO @ Tue, 16 Jun 2020 11:35:24: 13000000 INFO @ Tue, 16 Jun 2020 11:35:28: 7000000 INFO @ Tue, 16 Jun 2020 11:35:32: 10000000 INFO @ Tue, 16 Jun 2020 11:35:35: 14000000 INFO @ Tue, 16 Jun 2020 11:35:39: 8000000 INFO @ Tue, 16 Jun 2020 11:35:43: 11000000 INFO @ Tue, 16 Jun 2020 11:35:45: 15000000 INFO @ Tue, 16 Jun 2020 11:35:50: 9000000 INFO @ Tue, 16 Jun 2020 11:35:54: 12000000 INFO @ Tue, 16 Jun 2020 11:35:56: 16000000 INFO @ Tue, 16 Jun 2020 11:36:00: 10000000 INFO @ Tue, 16 Jun 2020 11:36:05: 13000000 INFO @ Tue, 16 Jun 2020 11:36:07: 17000000 INFO @ Tue, 16 Jun 2020 11:36:11: 11000000 INFO @ Tue, 16 Jun 2020 11:36:16: 14000000 INFO @ Tue, 16 Jun 2020 11:36:17: 18000000 INFO @ Tue, 16 Jun 2020 11:36:22: 12000000 INFO @ Tue, 16 Jun 2020 11:36:27: 15000000 INFO @ Tue, 16 Jun 2020 11:36:28: 19000000 INFO @ Tue, 16 Jun 2020 11:36:33: 13000000 INFO @ Tue, 16 Jun 2020 11:36:38: 20000000 INFO @ Tue, 16 Jun 2020 11:36:39: 16000000 INFO @ Tue, 16 Jun 2020 11:36:44: 14000000 INFO @ Tue, 16 Jun 2020 11:36:49: 21000000 INFO @ Tue, 16 Jun 2020 11:36:50: 17000000 INFO @ Tue, 16 Jun 2020 11:36:55: 15000000 INFO @ Tue, 16 Jun 2020 11:37:00: 22000000 INFO @ Tue, 16 Jun 2020 11:37:01: 18000000 INFO @ Tue, 16 Jun 2020 11:37:06: 16000000 INFO @ Tue, 16 Jun 2020 11:37:11: 23000000 INFO @ Tue, 16 Jun 2020 11:37:13: 19000000 INFO @ Tue, 16 Jun 2020 11:37:18: 17000000 INFO @ Tue, 16 Jun 2020 11:37:21: 24000000 INFO @ Tue, 16 Jun 2020 11:37:24: 20000000 INFO @ Tue, 16 Jun 2020 11:37:29: 18000000 INFO @ Tue, 16 Jun 2020 11:37:32: 25000000 INFO @ Tue, 16 Jun 2020 11:37:36: 21000000 INFO @ Tue, 16 Jun 2020 11:37:40: 19000000 INFO @ Tue, 16 Jun 2020 11:37:43: 26000000 INFO @ Tue, 16 Jun 2020 11:37:47: 22000000 INFO @ Tue, 16 Jun 2020 11:37:51: 20000000 INFO @ Tue, 16 Jun 2020 11:37:54: 27000000 INFO @ Tue, 16 Jun 2020 11:37:58: 23000000 INFO @ Tue, 16 Jun 2020 11:38:02: 21000000 INFO @ Tue, 16 Jun 2020 11:38:05: 28000000 INFO @ Tue, 16 Jun 2020 11:38:09: 24000000 INFO @ Tue, 16 Jun 2020 11:38:13: 22000000 INFO @ Tue, 16 Jun 2020 11:38:15: 29000000 INFO @ Tue, 16 Jun 2020 11:38:19: 25000000 INFO @ Tue, 16 Jun 2020 11:38:24: 23000000 INFO @ Tue, 16 Jun 2020 11:38:26: 30000000 INFO @ Tue, 16 Jun 2020 11:38:30: 26000000 INFO @ Tue, 16 Jun 2020 11:38:34: 24000000 INFO @ Tue, 16 Jun 2020 11:38:36: 31000000 INFO @ Tue, 16 Jun 2020 11:38:41: 27000000 INFO @ Tue, 16 Jun 2020 11:38:45: 25000000 INFO @ Tue, 16 Jun 2020 11:38:47: 32000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:38:52: 28000000 INFO @ Tue, 16 Jun 2020 11:38:56: 26000000 INFO @ Tue, 16 Jun 2020 11:38:57: 33000000 INFO @ Tue, 16 Jun 2020 11:39:03: 29000000 INFO @ Tue, 16 Jun 2020 11:39:07: 27000000 INFO @ Tue, 16 Jun 2020 11:39:08: 34000000 INFO @ Tue, 16 Jun 2020 11:39:13: 30000000 INFO @ Tue, 16 Jun 2020 11:39:17: 28000000 INFO @ Tue, 16 Jun 2020 11:39:19: 35000000 INFO @ Tue, 16 Jun 2020 11:39:24: 31000000 INFO @ Tue, 16 Jun 2020 11:39:28: 29000000 INFO @ Tue, 16 Jun 2020 11:39:29: 36000000 INFO @ Tue, 16 Jun 2020 11:39:35: 32000000 INFO @ Tue, 16 Jun 2020 11:39:39: 30000000 INFO @ Tue, 16 Jun 2020 11:39:40: 37000000 INFO @ Tue, 16 Jun 2020 11:39:46: 33000000 INFO @ Tue, 16 Jun 2020 11:39:50: 31000000 INFO @ Tue, 16 Jun 2020 11:39:50: 38000000 INFO @ Tue, 16 Jun 2020 11:39:56: 34000000 INFO @ Tue, 16 Jun 2020 11:40:00: 32000000 INFO @ Tue, 16 Jun 2020 11:40:01: 39000000 INFO @ Tue, 16 Jun 2020 11:40:07: 35000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:40:10: 33000000 INFO @ Tue, 16 Jun 2020 11:40:11: 40000000 INFO @ Tue, 16 Jun 2020 11:40:17: 36000000 INFO @ Tue, 16 Jun 2020 11:40:21: 34000000 INFO @ Tue, 16 Jun 2020 11:40:22: 41000000 INFO @ Tue, 16 Jun 2020 11:40:28: 37000000 INFO @ Tue, 16 Jun 2020 11:40:31: 35000000 INFO @ Tue, 16 Jun 2020 11:40:32: 42000000 INFO @ Tue, 16 Jun 2020 11:40:38: 38000000 INFO @ Tue, 16 Jun 2020 11:40:42: 36000000 INFO @ Tue, 16 Jun 2020 11:40:43: 43000000 INFO @ Tue, 16 Jun 2020 11:40:49: 39000000 INFO @ Tue, 16 Jun 2020 11:40:52: 37000000 INFO @ Tue, 16 Jun 2020 11:40:53: 44000000 INFO @ Tue, 16 Jun 2020 11:40:59: 40000000 INFO @ Tue, 16 Jun 2020 11:41:03: 38000000 INFO @ Tue, 16 Jun 2020 11:41:03: 45000000 INFO @ Tue, 16 Jun 2020 11:41:10: 41000000 INFO @ Tue, 16 Jun 2020 11:41:13: 39000000 INFO @ Tue, 16 Jun 2020 11:41:13: 46000000 INFO @ Tue, 16 Jun 2020 11:41:20: 42000000 INFO @ Tue, 16 Jun 2020 11:41:23: 40000000 INFO @ Tue, 16 Jun 2020 11:41:24: 47000000 INFO @ Tue, 16 Jun 2020 11:41:30: 43000000 INFO @ Tue, 16 Jun 2020 11:41:34: 41000000 INFO @ Tue, 16 Jun 2020 11:41:34: 48000000 INFO @ Tue, 16 Jun 2020 11:41:41: 44000000 INFO @ Tue, 16 Jun 2020 11:41:44: 42000000 INFO @ Tue, 16 Jun 2020 11:41:45: 49000000 INFO @ Tue, 16 Jun 2020 11:41:50: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:41:50: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:41:50: #1 total tags in treatment: 14272837 INFO @ Tue, 16 Jun 2020 11:41:50: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:41:50: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:41:51: #1 tags after filtering in treatment: 12209126 INFO @ Tue, 16 Jun 2020 11:41:51: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:41:51: #1 finished! INFO @ Tue, 16 Jun 2020 11:41:51: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:41:51: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:41:51: 45000000 INFO @ Tue, 16 Jun 2020 11:41:52: #2 number of paired peaks: 252 WARNING @ Tue, 16 Jun 2020 11:41:52: Fewer paired peaks (252) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 252 pairs to build model! INFO @ Tue, 16 Jun 2020 11:41:52: start model_add_line... INFO @ Tue, 16 Jun 2020 11:41:52: start X-correlation... INFO @ Tue, 16 Jun 2020 11:41:52: end of X-cor INFO @ Tue, 16 Jun 2020 11:41:52: #2 finished! INFO @ Tue, 16 Jun 2020 11:41:52: #2 predicted fragment length is 207 bps INFO @ Tue, 16 Jun 2020 11:41:52: #2 alternative fragment length(s) may be 207 bps INFO @ Tue, 16 Jun 2020 11:41:52: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619600/SRX6619600.05_model.r WARNING @ Tue, 16 Jun 2020 11:41:52: #2 Since the d (207) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:41:52: #2 You may need to consider one of the other alternative d(s): 207 WARNING @ Tue, 16 Jun 2020 11:41:52: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:41:52: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:41:52: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:41:55: 43000000 INFO @ Tue, 16 Jun 2020 11:42:01: 46000000 INFO @ Tue, 16 Jun 2020 11:42:05: 44000000 INFO @ Tue, 16 Jun 2020 11:42:12: 47000000 INFO @ Tue, 16 Jun 2020 11:42:15: 45000000 INFO @ Tue, 16 Jun 2020 11:42:17: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:42:22: 48000000 INFO @ Tue, 16 Jun 2020 11:42:26: 46000000 INFO @ Tue, 16 Jun 2020 11:42:28: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619600/SRX6619600.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:42:28: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619600/SRX6619600.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:42:28: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619600/SRX6619600.05_summits.bed INFO @ Tue, 16 Jun 2020 11:42:28: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (455 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:42:32: 49000000 INFO @ Tue, 16 Jun 2020 11:42:36: 47000000 INFO @ Tue, 16 Jun 2020 11:42:38: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:42:38: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:42:38: #1 total tags in treatment: 14272837 INFO @ Tue, 16 Jun 2020 11:42:38: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:42:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:42:39: #1 tags after filtering in treatment: 12209126 INFO @ Tue, 16 Jun 2020 11:42:39: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:42:39: #1 finished! INFO @ Tue, 16 Jun 2020 11:42:39: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:42:39: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:42:39: #2 number of paired peaks: 252 WARNING @ Tue, 16 Jun 2020 11:42:39: Fewer paired peaks (252) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 252 pairs to build model! INFO @ Tue, 16 Jun 2020 11:42:39: start model_add_line... INFO @ Tue, 16 Jun 2020 11:42:39: start X-correlation... INFO @ Tue, 16 Jun 2020 11:42:39: end of X-cor INFO @ Tue, 16 Jun 2020 11:42:39: #2 finished! INFO @ Tue, 16 Jun 2020 11:42:39: #2 predicted fragment length is 207 bps INFO @ Tue, 16 Jun 2020 11:42:39: #2 alternative fragment length(s) may be 207 bps INFO @ Tue, 16 Jun 2020 11:42:39: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619600/SRX6619600.10_model.r WARNING @ Tue, 16 Jun 2020 11:42:39: #2 Since the d (207) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:42:39: #2 You may need to consider one of the other alternative d(s): 207 WARNING @ Tue, 16 Jun 2020 11:42:39: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:42:39: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:42:39: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:42:45: 48000000 INFO @ Tue, 16 Jun 2020 11:42:54: 49000000 INFO @ Tue, 16 Jun 2020 11:42:59: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:42:59: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:42:59: #1 total tags in treatment: 14272837 INFO @ Tue, 16 Jun 2020 11:42:59: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:42:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:42:59: #1 tags after filtering in treatment: 12209126 INFO @ Tue, 16 Jun 2020 11:42:59: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:42:59: #1 finished! INFO @ Tue, 16 Jun 2020 11:42:59: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:42:59: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:43:00: #2 number of paired peaks: 252 WARNING @ Tue, 16 Jun 2020 11:43:00: Fewer paired peaks (252) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 252 pairs to build model! INFO @ Tue, 16 Jun 2020 11:43:00: start model_add_line... INFO @ Tue, 16 Jun 2020 11:43:00: start X-correlation... INFO @ Tue, 16 Jun 2020 11:43:00: end of X-cor INFO @ Tue, 16 Jun 2020 11:43:00: #2 finished! INFO @ Tue, 16 Jun 2020 11:43:00: #2 predicted fragment length is 207 bps INFO @ Tue, 16 Jun 2020 11:43:00: #2 alternative fragment length(s) may be 207 bps INFO @ Tue, 16 Jun 2020 11:43:00: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619600/SRX6619600.20_model.r WARNING @ Tue, 16 Jun 2020 11:43:00: #2 Since the d (207) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:43:00: #2 You may need to consider one of the other alternative d(s): 207 WARNING @ Tue, 16 Jun 2020 11:43:00: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:43:00: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:43:00: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:43:04: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:43:15: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619600/SRX6619600.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:43:15: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619600/SRX6619600.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:43:15: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619600/SRX6619600.10_summits.bed INFO @ Tue, 16 Jun 2020 11:43:15: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (317 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:43:25: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:43:37: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619600/SRX6619600.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:43:37: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619600/SRX6619600.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:43:37: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619600/SRX6619600.20_summits.bed INFO @ Tue, 16 Jun 2020 11:43:37: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (212 records, 4 fields): 1 millis CompletedMACS2peakCalling