Job ID = 6368895 SRX = SRX6619597 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:31:00 prefetch.2.10.7: 1) Downloading 'SRR9866015'... 2020-06-16T00:31:00 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:43:29 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:43:29 prefetch.2.10.7: 1) 'SRR9866015' was downloaded successfully 2020-06-16T00:43:29 prefetch.2.10.7: 'SRR9866015' has 0 unresolved dependencies Read 26871463 spots for SRR9866015/SRR9866015.sra Written 26871463 spots for SRR9866015/SRR9866015.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:06:14 26871463 reads; of these: 26871463 (100.00%) were paired; of these: 9327695 (34.71%) aligned concordantly 0 times 14870521 (55.34%) aligned concordantly exactly 1 time 2673247 (9.95%) aligned concordantly >1 times ---- 9327695 pairs aligned concordantly 0 times; of these: 5505691 (59.03%) aligned discordantly 1 time ---- 3822004 pairs aligned 0 times concordantly or discordantly; of these: 7644008 mates make up the pairs; of these: 5964892 (78.03%) aligned 0 times 605154 (7.92%) aligned exactly 1 time 1073962 (14.05%) aligned >1 times 88.90% overall alignment rate Time searching: 01:06:14 Overall time: 01:06:14 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 2373422 / 22704013 = 0.1045 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:20:47: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619597/SRX6619597.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619597/SRX6619597.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619597/SRX6619597.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619597/SRX6619597.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:20:47: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:20:47: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:20:54: 1000000 INFO @ Tue, 16 Jun 2020 11:21:01: 2000000 INFO @ Tue, 16 Jun 2020 11:21:07: 3000000 INFO @ Tue, 16 Jun 2020 11:21:14: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:21:17: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619597/SRX6619597.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619597/SRX6619597.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619597/SRX6619597.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619597/SRX6619597.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:21:17: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:21:17: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:21:21: 5000000 INFO @ Tue, 16 Jun 2020 11:21:24: 1000000 INFO @ Tue, 16 Jun 2020 11:21:29: 6000000 INFO @ Tue, 16 Jun 2020 11:21:32: 2000000 INFO @ Tue, 16 Jun 2020 11:21:36: 7000000 INFO @ Tue, 16 Jun 2020 11:21:39: 3000000 INFO @ Tue, 16 Jun 2020 11:21:44: 8000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:21:46: 4000000 INFO @ Tue, 16 Jun 2020 11:21:47: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619597/SRX6619597.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619597/SRX6619597.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619597/SRX6619597.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619597/SRX6619597.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:21:47: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:21:47: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:21:51: 9000000 INFO @ Tue, 16 Jun 2020 11:21:54: 5000000 INFO @ Tue, 16 Jun 2020 11:21:55: 1000000 INFO @ Tue, 16 Jun 2020 11:22:00: 10000000 INFO @ Tue, 16 Jun 2020 11:22:03: 6000000 INFO @ Tue, 16 Jun 2020 11:22:04: 2000000 INFO @ Tue, 16 Jun 2020 11:22:08: 11000000 INFO @ Tue, 16 Jun 2020 11:22:12: 3000000 INFO @ Tue, 16 Jun 2020 11:22:12: 7000000 INFO @ Tue, 16 Jun 2020 11:22:16: 12000000 INFO @ Tue, 16 Jun 2020 11:22:20: 4000000 INFO @ Tue, 16 Jun 2020 11:22:22: 8000000 INFO @ Tue, 16 Jun 2020 11:22:24: 13000000 INFO @ Tue, 16 Jun 2020 11:22:28: 5000000 INFO @ Tue, 16 Jun 2020 11:22:32: 9000000 INFO @ Tue, 16 Jun 2020 11:22:33: 14000000 INFO @ Tue, 16 Jun 2020 11:22:37: 6000000 INFO @ Tue, 16 Jun 2020 11:22:41: 10000000 INFO @ Tue, 16 Jun 2020 11:22:41: 15000000 INFO @ Tue, 16 Jun 2020 11:22:45: 7000000 INFO @ Tue, 16 Jun 2020 11:22:49: 16000000 INFO @ Tue, 16 Jun 2020 11:22:50: 11000000 INFO @ Tue, 16 Jun 2020 11:22:53: 8000000 INFO @ Tue, 16 Jun 2020 11:22:58: 17000000 INFO @ Tue, 16 Jun 2020 11:23:00: 12000000 INFO @ Tue, 16 Jun 2020 11:23:01: 9000000 INFO @ Tue, 16 Jun 2020 11:23:06: 18000000 INFO @ Tue, 16 Jun 2020 11:23:09: 10000000 INFO @ Tue, 16 Jun 2020 11:23:10: 13000000 INFO @ Tue, 16 Jun 2020 11:23:15: 19000000 INFO @ Tue, 16 Jun 2020 11:23:17: 11000000 INFO @ Tue, 16 Jun 2020 11:23:20: 14000000 INFO @ Tue, 16 Jun 2020 11:23:23: 20000000 INFO @ Tue, 16 Jun 2020 11:23:26: 12000000 INFO @ Tue, 16 Jun 2020 11:23:29: 15000000 INFO @ Tue, 16 Jun 2020 11:23:31: 21000000 INFO @ Tue, 16 Jun 2020 11:23:34: 13000000 INFO @ Tue, 16 Jun 2020 11:23:39: 16000000 INFO @ Tue, 16 Jun 2020 11:23:39: 22000000 INFO @ Tue, 16 Jun 2020 11:23:42: 14000000 INFO @ Tue, 16 Jun 2020 11:23:48: 23000000 INFO @ Tue, 16 Jun 2020 11:23:49: 17000000 INFO @ Tue, 16 Jun 2020 11:23:51: 15000000 INFO @ Tue, 16 Jun 2020 11:23:56: 24000000 INFO @ Tue, 16 Jun 2020 11:23:58: 18000000 INFO @ Tue, 16 Jun 2020 11:23:59: 16000000 INFO @ Tue, 16 Jun 2020 11:24:04: 25000000 INFO @ Tue, 16 Jun 2020 11:24:07: 17000000 INFO @ Tue, 16 Jun 2020 11:24:08: 19000000 INFO @ Tue, 16 Jun 2020 11:24:13: 26000000 INFO @ Tue, 16 Jun 2020 11:24:16: 18000000 INFO @ Tue, 16 Jun 2020 11:24:17: 20000000 INFO @ Tue, 16 Jun 2020 11:24:22: 27000000 INFO @ Tue, 16 Jun 2020 11:24:25: 19000000 INFO @ Tue, 16 Jun 2020 11:24:26: 21000000 INFO @ Tue, 16 Jun 2020 11:24:30: 28000000 INFO @ Tue, 16 Jun 2020 11:24:34: 20000000 INFO @ Tue, 16 Jun 2020 11:24:35: 22000000 INFO @ Tue, 16 Jun 2020 11:24:39: 29000000 INFO @ Tue, 16 Jun 2020 11:24:44: 21000000 INFO @ Tue, 16 Jun 2020 11:24:45: 23000000 INFO @ Tue, 16 Jun 2020 11:24:48: 30000000 INFO @ Tue, 16 Jun 2020 11:24:53: 22000000 INFO @ Tue, 16 Jun 2020 11:24:54: 24000000 INFO @ Tue, 16 Jun 2020 11:24:57: 31000000 INFO @ Tue, 16 Jun 2020 11:25:02: 23000000 INFO @ Tue, 16 Jun 2020 11:25:04: 25000000 INFO @ Tue, 16 Jun 2020 11:25:06: 32000000 INFO @ Tue, 16 Jun 2020 11:25:12: 24000000 INFO @ Tue, 16 Jun 2020 11:25:13: 26000000 INFO @ Tue, 16 Jun 2020 11:25:15: 33000000 INFO @ Tue, 16 Jun 2020 11:25:21: 25000000 INFO @ Tue, 16 Jun 2020 11:25:22: 27000000 INFO @ Tue, 16 Jun 2020 11:25:24: 34000000 INFO @ Tue, 16 Jun 2020 11:25:30: 26000000 INFO @ Tue, 16 Jun 2020 11:25:32: 28000000 INFO @ Tue, 16 Jun 2020 11:25:33: 35000000 INFO @ Tue, 16 Jun 2020 11:25:39: 27000000 INFO @ Tue, 16 Jun 2020 11:25:41: 29000000 INFO @ Tue, 16 Jun 2020 11:25:42: 36000000 INFO @ Tue, 16 Jun 2020 11:25:49: 28000000 INFO @ Tue, 16 Jun 2020 11:25:50: 30000000 INFO @ Tue, 16 Jun 2020 11:25:51: 37000000 INFO @ Tue, 16 Jun 2020 11:25:58: 29000000 INFO @ Tue, 16 Jun 2020 11:25:59: 31000000 INFO @ Tue, 16 Jun 2020 11:26:00: 38000000 INFO @ Tue, 16 Jun 2020 11:26:07: 30000000 INFO @ Tue, 16 Jun 2020 11:26:08: 32000000 INFO @ Tue, 16 Jun 2020 11:26:09: 39000000 INFO @ Tue, 16 Jun 2020 11:26:16: 31000000 INFO @ Tue, 16 Jun 2020 11:26:17: 33000000 INFO @ Tue, 16 Jun 2020 11:26:18: 40000000 INFO @ Tue, 16 Jun 2020 11:26:25: 32000000 INFO @ Tue, 16 Jun 2020 11:26:27: 34000000 INFO @ Tue, 16 Jun 2020 11:26:27: 41000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:26:34: 33000000 INFO @ Tue, 16 Jun 2020 11:26:36: 35000000 INFO @ Tue, 16 Jun 2020 11:26:36: 42000000 INFO @ Tue, 16 Jun 2020 11:26:43: 34000000 INFO @ Tue, 16 Jun 2020 11:26:45: 36000000 INFO @ Tue, 16 Jun 2020 11:26:45: 43000000 INFO @ Tue, 16 Jun 2020 11:26:46: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:26:46: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:26:46: #1 total tags in treatment: 15628566 INFO @ Tue, 16 Jun 2020 11:26:46: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:26:46: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:26:46: #1 tags after filtering in treatment: 13600452 INFO @ Tue, 16 Jun 2020 11:26:46: #1 Redundant rate of treatment: 0.13 INFO @ Tue, 16 Jun 2020 11:26:46: #1 finished! INFO @ Tue, 16 Jun 2020 11:26:46: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:26:46: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:26:47: #2 number of paired peaks: 263 WARNING @ Tue, 16 Jun 2020 11:26:47: Fewer paired peaks (263) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 263 pairs to build model! INFO @ Tue, 16 Jun 2020 11:26:47: start model_add_line... INFO @ Tue, 16 Jun 2020 11:26:47: start X-correlation... INFO @ Tue, 16 Jun 2020 11:26:47: end of X-cor INFO @ Tue, 16 Jun 2020 11:26:47: #2 finished! INFO @ Tue, 16 Jun 2020 11:26:47: #2 predicted fragment length is 203 bps INFO @ Tue, 16 Jun 2020 11:26:47: #2 alternative fragment length(s) may be 203 bps INFO @ Tue, 16 Jun 2020 11:26:47: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619597/SRX6619597.05_model.r WARNING @ Tue, 16 Jun 2020 11:26:47: #2 Since the d (203) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:26:47: #2 You may need to consider one of the other alternative d(s): 203 WARNING @ Tue, 16 Jun 2020 11:26:47: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:26:47: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:26:47: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:26:52: 35000000 INFO @ Tue, 16 Jun 2020 11:26:54: 37000000 INFO @ Tue, 16 Jun 2020 11:27:01: 36000000 INFO @ Tue, 16 Jun 2020 11:27:03: 38000000 INFO @ Tue, 16 Jun 2020 11:27:10: 37000000 INFO @ Tue, 16 Jun 2020 11:27:12: 39000000 INFO @ Tue, 16 Jun 2020 11:27:13: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:27:18: 38000000 INFO @ Tue, 16 Jun 2020 11:27:21: 40000000 INFO @ Tue, 16 Jun 2020 11:27:24: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619597/SRX6619597.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:27:24: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619597/SRX6619597.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:27:24: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619597/SRX6619597.05_summits.bed INFO @ Tue, 16 Jun 2020 11:27:24: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (438 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:27:27: 39000000 INFO @ Tue, 16 Jun 2020 11:27:29: 41000000 INFO @ Tue, 16 Jun 2020 11:27:35: 40000000 INFO @ Tue, 16 Jun 2020 11:27:38: 42000000 INFO @ Tue, 16 Jun 2020 11:27:44: 41000000 INFO @ Tue, 16 Jun 2020 11:27:46: 43000000 INFO @ Tue, 16 Jun 2020 11:27:47: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:27:47: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:27:47: #1 total tags in treatment: 15628566 INFO @ Tue, 16 Jun 2020 11:27:47: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:27:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:27:47: #1 tags after filtering in treatment: 13600452 INFO @ Tue, 16 Jun 2020 11:27:47: #1 Redundant rate of treatment: 0.13 INFO @ Tue, 16 Jun 2020 11:27:47: #1 finished! INFO @ Tue, 16 Jun 2020 11:27:47: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:27:47: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:27:48: #2 number of paired peaks: 263 WARNING @ Tue, 16 Jun 2020 11:27:48: Fewer paired peaks (263) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 263 pairs to build model! INFO @ Tue, 16 Jun 2020 11:27:48: start model_add_line... INFO @ Tue, 16 Jun 2020 11:27:48: start X-correlation... INFO @ Tue, 16 Jun 2020 11:27:48: end of X-cor INFO @ Tue, 16 Jun 2020 11:27:48: #2 finished! INFO @ Tue, 16 Jun 2020 11:27:48: #2 predicted fragment length is 203 bps INFO @ Tue, 16 Jun 2020 11:27:48: #2 alternative fragment length(s) may be 203 bps INFO @ Tue, 16 Jun 2020 11:27:48: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619597/SRX6619597.10_model.r WARNING @ Tue, 16 Jun 2020 11:27:48: #2 Since the d (203) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:27:48: #2 You may need to consider one of the other alternative d(s): 203 WARNING @ Tue, 16 Jun 2020 11:27:48: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:27:48: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:27:48: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:27:51: 42000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:27:57: 43000000 INFO @ Tue, 16 Jun 2020 11:27:58: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:27:58: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:27:58: #1 total tags in treatment: 15628566 INFO @ Tue, 16 Jun 2020 11:27:58: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:27:58: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:27:58: #1 tags after filtering in treatment: 13600452 INFO @ Tue, 16 Jun 2020 11:27:58: #1 Redundant rate of treatment: 0.13 INFO @ Tue, 16 Jun 2020 11:27:58: #1 finished! INFO @ Tue, 16 Jun 2020 11:27:58: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:27:58: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:27:59: #2 number of paired peaks: 263 WARNING @ Tue, 16 Jun 2020 11:27:59: Fewer paired peaks (263) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 263 pairs to build model! INFO @ Tue, 16 Jun 2020 11:27:59: start model_add_line... INFO @ Tue, 16 Jun 2020 11:27:59: start X-correlation... INFO @ Tue, 16 Jun 2020 11:27:59: end of X-cor INFO @ Tue, 16 Jun 2020 11:27:59: #2 finished! INFO @ Tue, 16 Jun 2020 11:27:59: #2 predicted fragment length is 203 bps INFO @ Tue, 16 Jun 2020 11:27:59: #2 alternative fragment length(s) may be 203 bps INFO @ Tue, 16 Jun 2020 11:27:59: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619597/SRX6619597.20_model.r WARNING @ Tue, 16 Jun 2020 11:27:59: #2 Since the d (203) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:27:59: #2 You may need to consider one of the other alternative d(s): 203 WARNING @ Tue, 16 Jun 2020 11:27:59: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:27:59: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:27:59: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:28:13: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:28:24: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:28:25: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619597/SRX6619597.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:28:25: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619597/SRX6619597.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:28:25: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619597/SRX6619597.10_summits.bed INFO @ Tue, 16 Jun 2020 11:28:25: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (336 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:28:36: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619597/SRX6619597.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:28:36: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619597/SRX6619597.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:28:36: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619597/SRX6619597.20_summits.bed INFO @ Tue, 16 Jun 2020 11:28:36: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (224 records, 4 fields): 3 millis CompletedMACS2peakCalling