Job ID = 6368894 SRX = SRX6619596 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:30:00 prefetch.2.10.7: 1) Downloading 'SRR9866012'... 2020-06-16T00:30:00 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:43:00 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:43:00 prefetch.2.10.7: 1) 'SRR9866012' was downloaded successfully 2020-06-16T00:43:00 prefetch.2.10.7: 'SRR9866012' has 0 unresolved dependencies Read 35117799 spots for SRR9866012/SRR9866012.sra Written 35117799 spots for SRR9866012/SRR9866012.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:06:02 35117799 reads; of these: 35117799 (100.00%) were paired; of these: 16168518 (46.04%) aligned concordantly 0 times 15645614 (44.55%) aligned concordantly exactly 1 time 3303667 (9.41%) aligned concordantly >1 times ---- 16168518 pairs aligned concordantly 0 times; of these: 7823972 (48.39%) aligned discordantly 1 time ---- 8344546 pairs aligned 0 times concordantly or discordantly; of these: 16689092 mates make up the pairs; of these: 13782188 (82.58%) aligned 0 times 1177379 (7.05%) aligned exactly 1 time 1729525 (10.36%) aligned >1 times 80.38% overall alignment rate Time searching: 01:06:03 Overall time: 01:06:03 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 44 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 3290771 / 26425404 = 0.1245 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:20:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619596/SRX6619596.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619596/SRX6619596.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619596/SRX6619596.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619596/SRX6619596.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:20:22: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:20:22: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:20:30: 1000000 INFO @ Tue, 16 Jun 2020 11:20:38: 2000000 INFO @ Tue, 16 Jun 2020 11:20:45: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:20:52: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619596/SRX6619596.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619596/SRX6619596.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619596/SRX6619596.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619596/SRX6619596.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:20:52: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:20:52: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:20:52: 4000000 INFO @ Tue, 16 Jun 2020 11:21:00: 5000000 INFO @ Tue, 16 Jun 2020 11:21:00: 1000000 INFO @ Tue, 16 Jun 2020 11:21:08: 6000000 INFO @ Tue, 16 Jun 2020 11:21:09: 2000000 INFO @ Tue, 16 Jun 2020 11:21:16: 7000000 INFO @ Tue, 16 Jun 2020 11:21:18: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:21:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619596/SRX6619596.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619596/SRX6619596.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619596/SRX6619596.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619596/SRX6619596.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:21:22: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:21:22: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:21:24: 8000000 INFO @ Tue, 16 Jun 2020 11:21:27: 4000000 INFO @ Tue, 16 Jun 2020 11:21:32: 1000000 INFO @ Tue, 16 Jun 2020 11:21:32: 9000000 INFO @ Tue, 16 Jun 2020 11:21:35: 5000000 INFO @ Tue, 16 Jun 2020 11:21:40: 10000000 INFO @ Tue, 16 Jun 2020 11:21:40: 2000000 INFO @ Tue, 16 Jun 2020 11:21:44: 6000000 INFO @ Tue, 16 Jun 2020 11:21:48: 11000000 INFO @ Tue, 16 Jun 2020 11:21:49: 3000000 INFO @ Tue, 16 Jun 2020 11:21:53: 7000000 INFO @ Tue, 16 Jun 2020 11:21:56: 12000000 INFO @ Tue, 16 Jun 2020 11:21:57: 4000000 INFO @ Tue, 16 Jun 2020 11:22:02: 8000000 INFO @ Tue, 16 Jun 2020 11:22:04: 13000000 INFO @ Tue, 16 Jun 2020 11:22:05: 5000000 INFO @ Tue, 16 Jun 2020 11:22:10: 9000000 INFO @ Tue, 16 Jun 2020 11:22:12: 14000000 INFO @ Tue, 16 Jun 2020 11:22:14: 6000000 INFO @ Tue, 16 Jun 2020 11:22:19: 10000000 INFO @ Tue, 16 Jun 2020 11:22:20: 15000000 INFO @ Tue, 16 Jun 2020 11:22:22: 7000000 INFO @ Tue, 16 Jun 2020 11:22:28: 11000000 INFO @ Tue, 16 Jun 2020 11:22:28: 16000000 INFO @ Tue, 16 Jun 2020 11:22:30: 8000000 INFO @ Tue, 16 Jun 2020 11:22:36: 17000000 INFO @ Tue, 16 Jun 2020 11:22:36: 12000000 INFO @ Tue, 16 Jun 2020 11:22:38: 9000000 INFO @ Tue, 16 Jun 2020 11:22:44: 18000000 INFO @ Tue, 16 Jun 2020 11:22:45: 13000000 INFO @ Tue, 16 Jun 2020 11:22:46: 10000000 INFO @ Tue, 16 Jun 2020 11:22:52: 19000000 INFO @ Tue, 16 Jun 2020 11:22:53: 14000000 INFO @ Tue, 16 Jun 2020 11:22:54: 11000000 INFO @ Tue, 16 Jun 2020 11:23:00: 20000000 INFO @ Tue, 16 Jun 2020 11:23:02: 12000000 INFO @ Tue, 16 Jun 2020 11:23:02: 15000000 INFO @ Tue, 16 Jun 2020 11:23:08: 21000000 INFO @ Tue, 16 Jun 2020 11:23:09: 13000000 INFO @ Tue, 16 Jun 2020 11:23:11: 16000000 INFO @ Tue, 16 Jun 2020 11:23:16: 22000000 INFO @ Tue, 16 Jun 2020 11:23:17: 14000000 INFO @ Tue, 16 Jun 2020 11:23:19: 17000000 INFO @ Tue, 16 Jun 2020 11:23:24: 23000000 INFO @ Tue, 16 Jun 2020 11:23:25: 15000000 INFO @ Tue, 16 Jun 2020 11:23:28: 18000000 INFO @ Tue, 16 Jun 2020 11:23:32: 24000000 INFO @ Tue, 16 Jun 2020 11:23:33: 16000000 INFO @ Tue, 16 Jun 2020 11:23:37: 19000000 INFO @ Tue, 16 Jun 2020 11:23:40: 25000000 INFO @ Tue, 16 Jun 2020 11:23:41: 17000000 INFO @ Tue, 16 Jun 2020 11:23:46: 20000000 INFO @ Tue, 16 Jun 2020 11:23:48: 26000000 INFO @ Tue, 16 Jun 2020 11:23:49: 18000000 INFO @ Tue, 16 Jun 2020 11:23:54: 21000000 INFO @ Tue, 16 Jun 2020 11:23:56: 27000000 INFO @ Tue, 16 Jun 2020 11:23:57: 19000000 INFO @ Tue, 16 Jun 2020 11:24:03: 22000000 INFO @ Tue, 16 Jun 2020 11:24:04: 28000000 INFO @ Tue, 16 Jun 2020 11:24:06: 20000000 INFO @ Tue, 16 Jun 2020 11:24:12: 23000000 INFO @ Tue, 16 Jun 2020 11:24:12: 29000000 INFO @ Tue, 16 Jun 2020 11:24:14: 21000000 INFO @ Tue, 16 Jun 2020 11:24:20: 30000000 INFO @ Tue, 16 Jun 2020 11:24:20: 24000000 INFO @ Tue, 16 Jun 2020 11:24:22: 22000000 INFO @ Tue, 16 Jun 2020 11:24:28: 31000000 INFO @ Tue, 16 Jun 2020 11:24:29: 25000000 INFO @ Tue, 16 Jun 2020 11:24:30: 23000000 INFO @ Tue, 16 Jun 2020 11:24:35: 32000000 INFO @ Tue, 16 Jun 2020 11:24:38: 26000000 INFO @ Tue, 16 Jun 2020 11:24:38: 24000000 INFO @ Tue, 16 Jun 2020 11:24:43: 33000000 INFO @ Tue, 16 Jun 2020 11:24:46: 25000000 INFO @ Tue, 16 Jun 2020 11:24:47: 27000000 INFO @ Tue, 16 Jun 2020 11:24:51: 34000000 INFO @ Tue, 16 Jun 2020 11:24:55: 26000000 INFO @ Tue, 16 Jun 2020 11:24:55: 28000000 INFO @ Tue, 16 Jun 2020 11:24:59: 35000000 INFO @ Tue, 16 Jun 2020 11:25:03: 27000000 INFO @ Tue, 16 Jun 2020 11:25:04: 29000000 INFO @ Tue, 16 Jun 2020 11:25:07: 36000000 INFO @ Tue, 16 Jun 2020 11:25:10: 28000000 INFO @ Tue, 16 Jun 2020 11:25:13: 30000000 INFO @ Tue, 16 Jun 2020 11:25:15: 37000000 INFO @ Tue, 16 Jun 2020 11:25:18: 29000000 INFO @ Tue, 16 Jun 2020 11:25:21: 31000000 INFO @ Tue, 16 Jun 2020 11:25:23: 38000000 INFO @ Tue, 16 Jun 2020 11:25:26: 30000000 INFO @ Tue, 16 Jun 2020 11:25:30: 32000000 INFO @ Tue, 16 Jun 2020 11:25:30: 39000000 INFO @ Tue, 16 Jun 2020 11:25:34: 31000000 INFO @ Tue, 16 Jun 2020 11:25:38: 40000000 INFO @ Tue, 16 Jun 2020 11:25:38: 33000000 INFO @ Tue, 16 Jun 2020 11:25:42: 32000000 INFO @ Tue, 16 Jun 2020 11:25:46: 41000000 INFO @ Tue, 16 Jun 2020 11:25:47: 34000000 INFO @ Tue, 16 Jun 2020 11:25:50: 33000000 INFO @ Tue, 16 Jun 2020 11:25:53: 42000000 INFO @ Tue, 16 Jun 2020 11:25:56: 35000000 INFO @ Tue, 16 Jun 2020 11:25:57: 34000000 INFO @ Tue, 16 Jun 2020 11:26:01: 43000000 INFO @ Tue, 16 Jun 2020 11:26:04: 36000000 INFO @ Tue, 16 Jun 2020 11:26:05: 35000000 INFO @ Tue, 16 Jun 2020 11:26:09: 44000000 INFO @ Tue, 16 Jun 2020 11:26:13: 37000000 INFO @ Tue, 16 Jun 2020 11:26:13: 36000000 INFO @ Tue, 16 Jun 2020 11:26:17: 45000000 INFO @ Tue, 16 Jun 2020 11:26:21: 37000000 INFO @ Tue, 16 Jun 2020 11:26:21: 38000000 INFO @ Tue, 16 Jun 2020 11:26:25: 46000000 INFO @ Tue, 16 Jun 2020 11:26:28: 38000000 INFO @ Tue, 16 Jun 2020 11:26:30: 39000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:26:32: 47000000 INFO @ Tue, 16 Jun 2020 11:26:36: 39000000 INFO @ Tue, 16 Jun 2020 11:26:38: 40000000 INFO @ Tue, 16 Jun 2020 11:26:40: 48000000 INFO @ Tue, 16 Jun 2020 11:26:43: 40000000 INFO @ Tue, 16 Jun 2020 11:26:47: 41000000 INFO @ Tue, 16 Jun 2020 11:26:48: 49000000 INFO @ Tue, 16 Jun 2020 11:26:51: 41000000 INFO @ Tue, 16 Jun 2020 11:26:55: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:26:55: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:26:55: #1 total tags in treatment: 16441982 INFO @ Tue, 16 Jun 2020 11:26:55: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:26:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:26:55: 42000000 INFO @ Tue, 16 Jun 2020 11:26:55: #1 tags after filtering in treatment: 13818929 INFO @ Tue, 16 Jun 2020 11:26:55: #1 Redundant rate of treatment: 0.16 INFO @ Tue, 16 Jun 2020 11:26:55: #1 finished! INFO @ Tue, 16 Jun 2020 11:26:55: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:26:55: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:26:56: #2 number of paired peaks: 269 WARNING @ Tue, 16 Jun 2020 11:26:56: Fewer paired peaks (269) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 269 pairs to build model! INFO @ Tue, 16 Jun 2020 11:26:56: start model_add_line... INFO @ Tue, 16 Jun 2020 11:26:56: start X-correlation... INFO @ Tue, 16 Jun 2020 11:26:56: end of X-cor INFO @ Tue, 16 Jun 2020 11:26:56: #2 finished! INFO @ Tue, 16 Jun 2020 11:26:56: #2 predicted fragment length is 204 bps INFO @ Tue, 16 Jun 2020 11:26:56: #2 alternative fragment length(s) may be 204 bps INFO @ Tue, 16 Jun 2020 11:26:56: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619596/SRX6619596.05_model.r WARNING @ Tue, 16 Jun 2020 11:26:56: #2 Since the d (204) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:26:56: #2 You may need to consider one of the other alternative d(s): 204 WARNING @ Tue, 16 Jun 2020 11:26:56: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:26:56: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:26:56: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:26:59: 42000000 INFO @ Tue, 16 Jun 2020 11:27:04: 43000000 INFO @ Tue, 16 Jun 2020 11:27:07: 43000000 INFO @ Tue, 16 Jun 2020 11:27:12: 44000000 INFO @ Tue, 16 Jun 2020 11:27:15: 44000000 INFO @ Tue, 16 Jun 2020 11:27:21: 45000000 INFO @ Tue, 16 Jun 2020 11:27:23: 45000000 INFO @ Tue, 16 Jun 2020 11:27:26: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:27:30: 46000000 INFO @ Tue, 16 Jun 2020 11:27:31: 46000000 INFO @ Tue, 16 Jun 2020 11:27:39: 47000000 INFO @ Tue, 16 Jun 2020 11:27:39: 47000000 INFO @ Tue, 16 Jun 2020 11:27:41: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619596/SRX6619596.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:27:41: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619596/SRX6619596.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:27:41: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619596/SRX6619596.05_summits.bed INFO @ Tue, 16 Jun 2020 11:27:41: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (599 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:27:47: 48000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:27:48: 48000000 INFO @ Tue, 16 Jun 2020 11:27:56: 49000000 INFO @ Tue, 16 Jun 2020 11:27:57: 49000000 INFO @ Tue, 16 Jun 2020 11:28:04: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:28:04: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:28:04: #1 total tags in treatment: 16441982 INFO @ Tue, 16 Jun 2020 11:28:04: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:28:04: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:28:04: #1 tags after filtering in treatment: 13818929 INFO @ Tue, 16 Jun 2020 11:28:04: #1 Redundant rate of treatment: 0.16 INFO @ Tue, 16 Jun 2020 11:28:04: #1 finished! INFO @ Tue, 16 Jun 2020 11:28:04: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:28:04: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:28:04: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:28:04: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:28:04: #1 total tags in treatment: 16441982 INFO @ Tue, 16 Jun 2020 11:28:04: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:28:04: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:28:05: #1 tags after filtering in treatment: 13818929 INFO @ Tue, 16 Jun 2020 11:28:05: #1 Redundant rate of treatment: 0.16 INFO @ Tue, 16 Jun 2020 11:28:05: #1 finished! INFO @ Tue, 16 Jun 2020 11:28:05: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:28:05: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:28:05: #2 number of paired peaks: 269 WARNING @ Tue, 16 Jun 2020 11:28:05: Fewer paired peaks (269) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 269 pairs to build model! INFO @ Tue, 16 Jun 2020 11:28:05: start model_add_line... INFO @ Tue, 16 Jun 2020 11:28:05: start X-correlation... INFO @ Tue, 16 Jun 2020 11:28:05: end of X-cor INFO @ Tue, 16 Jun 2020 11:28:05: #2 finished! INFO @ Tue, 16 Jun 2020 11:28:05: #2 predicted fragment length is 204 bps INFO @ Tue, 16 Jun 2020 11:28:05: #2 alternative fragment length(s) may be 204 bps INFO @ Tue, 16 Jun 2020 11:28:05: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619596/SRX6619596.10_model.r WARNING @ Tue, 16 Jun 2020 11:28:05: #2 Since the d (204) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:28:05: #2 You may need to consider one of the other alternative d(s): 204 WARNING @ Tue, 16 Jun 2020 11:28:05: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:28:05: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:28:05: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:28:06: #2 number of paired peaks: 269 WARNING @ Tue, 16 Jun 2020 11:28:06: Fewer paired peaks (269) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 269 pairs to build model! INFO @ Tue, 16 Jun 2020 11:28:06: start model_add_line... INFO @ Tue, 16 Jun 2020 11:28:06: start X-correlation... INFO @ Tue, 16 Jun 2020 11:28:06: end of X-cor INFO @ Tue, 16 Jun 2020 11:28:06: #2 finished! INFO @ Tue, 16 Jun 2020 11:28:06: #2 predicted fragment length is 204 bps INFO @ Tue, 16 Jun 2020 11:28:06: #2 alternative fragment length(s) may be 204 bps INFO @ Tue, 16 Jun 2020 11:28:06: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619596/SRX6619596.20_model.r WARNING @ Tue, 16 Jun 2020 11:28:06: #2 Since the d (204) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:28:06: #2 You may need to consider one of the other alternative d(s): 204 WARNING @ Tue, 16 Jun 2020 11:28:06: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:28:06: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:28:06: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:28:33: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:28:35: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:28:46: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619596/SRX6619596.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:28:46: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619596/SRX6619596.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:28:46: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619596/SRX6619596.10_summits.bed INFO @ Tue, 16 Jun 2020 11:28:46: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (397 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:28:50: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619596/SRX6619596.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:28:50: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619596/SRX6619596.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:28:50: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619596/SRX6619596.20_summits.bed INFO @ Tue, 16 Jun 2020 11:28:50: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (252 records, 4 fields): 1 millis CompletedMACS2peakCalling