Job ID = 6368888 SRX = SRX6619590 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:41:43 prefetch.2.10.7: 1) Downloading 'SRR9866019'... 2020-06-16T00:41:43 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:54:46 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:54:46 prefetch.2.10.7: 1) 'SRR9866019' was downloaded successfully 2020-06-16T00:54:46 prefetch.2.10.7: 'SRR9866019' has 0 unresolved dependencies Read 30335115 spots for SRR9866019/SRR9866019.sra Written 30335115 spots for SRR9866019/SRR9866019.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:16:20 30335115 reads; of these: 30335115 (100.00%) were paired; of these: 10741612 (35.41%) aligned concordantly 0 times 14899927 (49.12%) aligned concordantly exactly 1 time 4693576 (15.47%) aligned concordantly >1 times ---- 10741612 pairs aligned concordantly 0 times; of these: 6210269 (57.82%) aligned discordantly 1 time ---- 4531343 pairs aligned 0 times concordantly or discordantly; of these: 9062686 mates make up the pairs; of these: 4527335 (49.96%) aligned 0 times 1408126 (15.54%) aligned exactly 1 time 3127225 (34.51%) aligned >1 times 92.54% overall alignment rate Time searching: 01:16:20 Overall time: 01:16:20 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 44 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 4508157 / 25699018 = 0.1754 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:40:09: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619590/SRX6619590.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619590/SRX6619590.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619590/SRX6619590.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619590/SRX6619590.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:40:09: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:40:09: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:40:16: 1000000 INFO @ Tue, 16 Jun 2020 11:40:23: 2000000 INFO @ Tue, 16 Jun 2020 11:40:30: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:40:37: 4000000 INFO @ Tue, 16 Jun 2020 11:40:38: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619590/SRX6619590.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619590/SRX6619590.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619590/SRX6619590.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619590/SRX6619590.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:40:38: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:40:38: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:40:44: 5000000 INFO @ Tue, 16 Jun 2020 11:40:46: 1000000 INFO @ Tue, 16 Jun 2020 11:40:51: 6000000 INFO @ Tue, 16 Jun 2020 11:40:53: 2000000 INFO @ Tue, 16 Jun 2020 11:40:59: 7000000 INFO @ Tue, 16 Jun 2020 11:41:01: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:41:06: 8000000 INFO @ Tue, 16 Jun 2020 11:41:08: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619590/SRX6619590.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619590/SRX6619590.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619590/SRX6619590.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619590/SRX6619590.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:41:08: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:41:08: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:41:08: 4000000 INFO @ Tue, 16 Jun 2020 11:41:14: 9000000 INFO @ Tue, 16 Jun 2020 11:41:16: 5000000 INFO @ Tue, 16 Jun 2020 11:41:17: 1000000 INFO @ Tue, 16 Jun 2020 11:41:22: 10000000 INFO @ Tue, 16 Jun 2020 11:41:24: 6000000 INFO @ Tue, 16 Jun 2020 11:41:25: 2000000 INFO @ Tue, 16 Jun 2020 11:41:30: 11000000 INFO @ Tue, 16 Jun 2020 11:41:32: 7000000 INFO @ Tue, 16 Jun 2020 11:41:34: 3000000 INFO @ Tue, 16 Jun 2020 11:41:38: 12000000 INFO @ Tue, 16 Jun 2020 11:41:40: 8000000 INFO @ Tue, 16 Jun 2020 11:41:44: 4000000 INFO @ Tue, 16 Jun 2020 11:41:46: 13000000 INFO @ Tue, 16 Jun 2020 11:41:47: 9000000 INFO @ Tue, 16 Jun 2020 11:41:53: 14000000 INFO @ Tue, 16 Jun 2020 11:41:54: 5000000 INFO @ Tue, 16 Jun 2020 11:41:55: 10000000 INFO @ Tue, 16 Jun 2020 11:42:02: 15000000 INFO @ Tue, 16 Jun 2020 11:42:03: 11000000 INFO @ Tue, 16 Jun 2020 11:42:03: 6000000 INFO @ Tue, 16 Jun 2020 11:42:10: 16000000 INFO @ Tue, 16 Jun 2020 11:42:11: 12000000 INFO @ Tue, 16 Jun 2020 11:42:12: 7000000 INFO @ Tue, 16 Jun 2020 11:42:18: 17000000 INFO @ Tue, 16 Jun 2020 11:42:19: 13000000 INFO @ Tue, 16 Jun 2020 11:42:21: 8000000 INFO @ Tue, 16 Jun 2020 11:42:26: 18000000 INFO @ Tue, 16 Jun 2020 11:42:27: 14000000 INFO @ Tue, 16 Jun 2020 11:42:30: 9000000 INFO @ Tue, 16 Jun 2020 11:42:34: 19000000 INFO @ Tue, 16 Jun 2020 11:42:35: 15000000 INFO @ Tue, 16 Jun 2020 11:42:38: 10000000 INFO @ Tue, 16 Jun 2020 11:42:42: 20000000 INFO @ Tue, 16 Jun 2020 11:42:43: 16000000 INFO @ Tue, 16 Jun 2020 11:42:47: 11000000 INFO @ Tue, 16 Jun 2020 11:42:50: 21000000 INFO @ Tue, 16 Jun 2020 11:42:51: 17000000 INFO @ Tue, 16 Jun 2020 11:42:56: 12000000 INFO @ Tue, 16 Jun 2020 11:42:58: 22000000 INFO @ Tue, 16 Jun 2020 11:42:59: 18000000 INFO @ Tue, 16 Jun 2020 11:43:05: 13000000 INFO @ Tue, 16 Jun 2020 11:43:05: 23000000 INFO @ Tue, 16 Jun 2020 11:43:06: 19000000 INFO @ Tue, 16 Jun 2020 11:43:13: 24000000 INFO @ Tue, 16 Jun 2020 11:43:14: 14000000 INFO @ Tue, 16 Jun 2020 11:43:14: 20000000 INFO @ Tue, 16 Jun 2020 11:43:21: 25000000 INFO @ Tue, 16 Jun 2020 11:43:22: 21000000 INFO @ Tue, 16 Jun 2020 11:43:23: 15000000 INFO @ Tue, 16 Jun 2020 11:43:28: 26000000 INFO @ Tue, 16 Jun 2020 11:43:30: 22000000 INFO @ Tue, 16 Jun 2020 11:43:31: 16000000 INFO @ Tue, 16 Jun 2020 11:43:36: 27000000 INFO @ Tue, 16 Jun 2020 11:43:37: 23000000 INFO @ Tue, 16 Jun 2020 11:43:39: 17000000 INFO @ Tue, 16 Jun 2020 11:43:43: 28000000 INFO @ Tue, 16 Jun 2020 11:43:45: 24000000 INFO @ Tue, 16 Jun 2020 11:43:46: 18000000 INFO @ Tue, 16 Jun 2020 11:43:50: 29000000 INFO @ Tue, 16 Jun 2020 11:43:52: 25000000 INFO @ Tue, 16 Jun 2020 11:43:54: 19000000 INFO @ Tue, 16 Jun 2020 11:43:58: 30000000 INFO @ Tue, 16 Jun 2020 11:44:00: 26000000 INFO @ Tue, 16 Jun 2020 11:44:01: 20000000 INFO @ Tue, 16 Jun 2020 11:44:05: 31000000 INFO @ Tue, 16 Jun 2020 11:44:07: 27000000 INFO @ Tue, 16 Jun 2020 11:44:09: 21000000 INFO @ Tue, 16 Jun 2020 11:44:12: 32000000 INFO @ Tue, 16 Jun 2020 11:44:14: 28000000 INFO @ Tue, 16 Jun 2020 11:44:17: 22000000 INFO @ Tue, 16 Jun 2020 11:44:20: 33000000 INFO @ Tue, 16 Jun 2020 11:44:21: 29000000 INFO @ Tue, 16 Jun 2020 11:44:24: 23000000 INFO @ Tue, 16 Jun 2020 11:44:27: 34000000 INFO @ Tue, 16 Jun 2020 11:44:29: 30000000 INFO @ Tue, 16 Jun 2020 11:44:33: 24000000 INFO @ Tue, 16 Jun 2020 11:44:35: 35000000 INFO @ Tue, 16 Jun 2020 11:44:36: 31000000 INFO @ Tue, 16 Jun 2020 11:44:42: 25000000 INFO @ Tue, 16 Jun 2020 11:44:42: 36000000 INFO @ Tue, 16 Jun 2020 11:44:44: 32000000 INFO @ Tue, 16 Jun 2020 11:44:50: 37000000 INFO @ Tue, 16 Jun 2020 11:44:51: 26000000 INFO @ Tue, 16 Jun 2020 11:44:52: 33000000 INFO @ Tue, 16 Jun 2020 11:44:57: 38000000 INFO @ Tue, 16 Jun 2020 11:44:59: 34000000 INFO @ Tue, 16 Jun 2020 11:44:59: 27000000 INFO @ Tue, 16 Jun 2020 11:45:04: 39000000 INFO @ Tue, 16 Jun 2020 11:45:07: 35000000 INFO @ Tue, 16 Jun 2020 11:45:08: 28000000 INFO @ Tue, 16 Jun 2020 11:45:11: 40000000 INFO @ Tue, 16 Jun 2020 11:45:14: 36000000 INFO @ Tue, 16 Jun 2020 11:45:16: 29000000 INFO @ Tue, 16 Jun 2020 11:45:19: 41000000 INFO @ Tue, 16 Jun 2020 11:45:21: 37000000 INFO @ Tue, 16 Jun 2020 11:45:23: 30000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:45:26: 42000000 INFO @ Tue, 16 Jun 2020 11:45:29: 38000000 INFO @ Tue, 16 Jun 2020 11:45:31: 31000000 INFO @ Tue, 16 Jun 2020 11:45:34: 43000000 INFO @ Tue, 16 Jun 2020 11:45:36: 39000000 INFO @ Tue, 16 Jun 2020 11:45:39: 32000000 INFO @ Tue, 16 Jun 2020 11:45:41: 44000000 INFO @ Tue, 16 Jun 2020 11:45:43: 40000000 INFO @ Tue, 16 Jun 2020 11:45:48: 33000000 INFO @ Tue, 16 Jun 2020 11:45:49: 45000000 INFO @ Tue, 16 Jun 2020 11:45:51: 41000000 INFO @ Tue, 16 Jun 2020 11:45:56: 46000000 INFO @ Tue, 16 Jun 2020 11:45:57: 34000000 INFO @ Tue, 16 Jun 2020 11:45:58: 42000000 INFO @ Tue, 16 Jun 2020 11:46:04: 47000000 INFO @ Tue, 16 Jun 2020 11:46:05: 35000000 INFO @ Tue, 16 Jun 2020 11:46:05: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:46:05: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:46:05: #1 total tags in treatment: 16169742 INFO @ Tue, 16 Jun 2020 11:46:05: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:46:05: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:46:06: #1 tags after filtering in treatment: 12783938 INFO @ Tue, 16 Jun 2020 11:46:06: #1 Redundant rate of treatment: 0.21 INFO @ Tue, 16 Jun 2020 11:46:06: #1 finished! INFO @ Tue, 16 Jun 2020 11:46:06: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:46:06: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:46:06: 43000000 INFO @ Tue, 16 Jun 2020 11:46:07: #2 number of paired peaks: 1683 INFO @ Tue, 16 Jun 2020 11:46:07: start model_add_line... INFO @ Tue, 16 Jun 2020 11:46:07: start X-correlation... INFO @ Tue, 16 Jun 2020 11:46:07: end of X-cor INFO @ Tue, 16 Jun 2020 11:46:07: #2 finished! INFO @ Tue, 16 Jun 2020 11:46:07: #2 predicted fragment length is 240 bps INFO @ Tue, 16 Jun 2020 11:46:07: #2 alternative fragment length(s) may be 4,240 bps INFO @ Tue, 16 Jun 2020 11:46:07: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619590/SRX6619590.05_model.r WARNING @ Tue, 16 Jun 2020 11:46:07: #2 Since the d (240) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:46:07: #2 You may need to consider one of the other alternative d(s): 4,240 WARNING @ Tue, 16 Jun 2020 11:46:07: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:46:07: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:46:07: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:46:13: 36000000 INFO @ Tue, 16 Jun 2020 11:46:13: 44000000 INFO @ Tue, 16 Jun 2020 11:46:21: 45000000 INFO @ Tue, 16 Jun 2020 11:46:21: 37000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:46:29: 46000000 INFO @ Tue, 16 Jun 2020 11:46:30: 38000000 INFO @ Tue, 16 Jun 2020 11:46:37: 47000000 INFO @ Tue, 16 Jun 2020 11:46:38: 39000000 INFO @ Tue, 16 Jun 2020 11:46:38: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:46:38: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:46:38: #1 total tags in treatment: 16169742 INFO @ Tue, 16 Jun 2020 11:46:38: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:46:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:46:39: #1 tags after filtering in treatment: 12783938 INFO @ Tue, 16 Jun 2020 11:46:39: #1 Redundant rate of treatment: 0.21 INFO @ Tue, 16 Jun 2020 11:46:39: #1 finished! INFO @ Tue, 16 Jun 2020 11:46:39: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:46:39: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:46:40: #2 number of paired peaks: 1683 INFO @ Tue, 16 Jun 2020 11:46:40: start model_add_line... INFO @ Tue, 16 Jun 2020 11:46:40: start X-correlation... INFO @ Tue, 16 Jun 2020 11:46:40: end of X-cor INFO @ Tue, 16 Jun 2020 11:46:40: #2 finished! INFO @ Tue, 16 Jun 2020 11:46:40: #2 predicted fragment length is 240 bps INFO @ Tue, 16 Jun 2020 11:46:40: #2 alternative fragment length(s) may be 4,240 bps INFO @ Tue, 16 Jun 2020 11:46:40: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619590/SRX6619590.10_model.r WARNING @ Tue, 16 Jun 2020 11:46:40: #2 Since the d (240) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:46:40: #2 You may need to consider one of the other alternative d(s): 4,240 WARNING @ Tue, 16 Jun 2020 11:46:40: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:46:40: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:46:40: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:46:46: 40000000 INFO @ Tue, 16 Jun 2020 11:46:47: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:46:54: 41000000 INFO @ Tue, 16 Jun 2020 11:47:02: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619590/SRX6619590.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:47:02: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619590/SRX6619590.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:47:02: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619590/SRX6619590.05_summits.bed INFO @ Tue, 16 Jun 2020 11:47:03: Done! INFO @ Tue, 16 Jun 2020 11:47:03: 42000000 pass1 - making usageList (6 chroms): 2 millis pass2 - checking and writing primary data (9198 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:47:11: 43000000 INFO @ Tue, 16 Jun 2020 11:47:18: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:47:19: 44000000 INFO @ Tue, 16 Jun 2020 11:47:28: 45000000 INFO @ Tue, 16 Jun 2020 11:47:34: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619590/SRX6619590.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:47:34: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619590/SRX6619590.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:47:34: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619590/SRX6619590.10_summits.bed INFO @ Tue, 16 Jun 2020 11:47:34: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (4363 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:47:36: 46000000 INFO @ Tue, 16 Jun 2020 11:47:45: 47000000 INFO @ Tue, 16 Jun 2020 11:47:46: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:47:46: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:47:46: #1 total tags in treatment: 16169742 INFO @ Tue, 16 Jun 2020 11:47:46: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:47:46: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:47:46: #1 tags after filtering in treatment: 12783938 INFO @ Tue, 16 Jun 2020 11:47:46: #1 Redundant rate of treatment: 0.21 INFO @ Tue, 16 Jun 2020 11:47:46: #1 finished! INFO @ Tue, 16 Jun 2020 11:47:46: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:47:46: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:47:47: #2 number of paired peaks: 1683 INFO @ Tue, 16 Jun 2020 11:47:47: start model_add_line... INFO @ Tue, 16 Jun 2020 11:47:48: start X-correlation... INFO @ Tue, 16 Jun 2020 11:47:48: end of X-cor INFO @ Tue, 16 Jun 2020 11:47:48: #2 finished! INFO @ Tue, 16 Jun 2020 11:47:48: #2 predicted fragment length is 240 bps INFO @ Tue, 16 Jun 2020 11:47:48: #2 alternative fragment length(s) may be 4,240 bps INFO @ Tue, 16 Jun 2020 11:47:48: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619590/SRX6619590.20_model.r WARNING @ Tue, 16 Jun 2020 11:47:48: #2 Since the d (240) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:47:48: #2 You may need to consider one of the other alternative d(s): 4,240 WARNING @ Tue, 16 Jun 2020 11:47:48: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:47:48: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:47:48: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:48:27: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:48:43: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619590/SRX6619590.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:48:43: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619590/SRX6619590.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:48:43: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619590/SRX6619590.20_summits.bed INFO @ Tue, 16 Jun 2020 11:48:43: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (1547 records, 4 fields): 3 millis CompletedMACS2peakCalling