Job ID = 6368886 SRX = SRX6619588 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:33:10 prefetch.2.10.7: 1) Downloading 'SRR9866021'... 2020-06-16T00:33:10 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:56:29 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:56:29 prefetch.2.10.7: 1) 'SRR9866021' was downloaded successfully 2020-06-16T00:56:29 prefetch.2.10.7: 'SRR9866021' has 0 unresolved dependencies Read 63031761 spots for SRR9866021/SRR9866021.sra Written 63031761 spots for SRR9866021/SRR9866021.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:35:13 63031761 reads; of these: 63031761 (100.00%) were paired; of these: 23023586 (36.53%) aligned concordantly 0 times 30430540 (48.28%) aligned concordantly exactly 1 time 9577635 (15.19%) aligned concordantly >1 times ---- 23023586 pairs aligned concordantly 0 times; of these: 13932847 (60.52%) aligned discordantly 1 time ---- 9090739 pairs aligned 0 times concordantly or discordantly; of these: 18181478 mates make up the pairs; of these: 8263088 (45.45%) aligned 0 times 3324373 (18.28%) aligned exactly 1 time 6594017 (36.27%) aligned >1 times 93.45% overall alignment rate Time searching: 02:35:13 Overall time: 02:35:13 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 88 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 8501576 / 53684676 = 0.1584 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 13:28:47: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619588/SRX6619588.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619588/SRX6619588.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619588/SRX6619588.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619588/SRX6619588.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 13:28:47: #1 read tag files... INFO @ Tue, 16 Jun 2020 13:28:47: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 13:28:54: 1000000 INFO @ Tue, 16 Jun 2020 13:29:01: 2000000 INFO @ Tue, 16 Jun 2020 13:29:08: 3000000 INFO @ Tue, 16 Jun 2020 13:29:14: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 13:29:17: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619588/SRX6619588.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619588/SRX6619588.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619588/SRX6619588.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619588/SRX6619588.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 13:29:17: #1 read tag files... INFO @ Tue, 16 Jun 2020 13:29:17: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 13:29:21: 5000000 INFO @ Tue, 16 Jun 2020 13:29:23: 1000000 INFO @ Tue, 16 Jun 2020 13:29:29: 6000000 INFO @ Tue, 16 Jun 2020 13:29:31: 2000000 INFO @ Tue, 16 Jun 2020 13:29:35: 7000000 INFO @ Tue, 16 Jun 2020 13:29:38: 3000000 INFO @ Tue, 16 Jun 2020 13:29:43: 8000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 13:29:45: 4000000 INFO @ Tue, 16 Jun 2020 13:29:47: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619588/SRX6619588.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619588/SRX6619588.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619588/SRX6619588.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619588/SRX6619588.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 13:29:47: #1 read tag files... INFO @ Tue, 16 Jun 2020 13:29:47: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 13:29:50: 9000000 INFO @ Tue, 16 Jun 2020 13:29:52: 5000000 INFO @ Tue, 16 Jun 2020 13:29:54: 1000000 INFO @ Tue, 16 Jun 2020 13:29:57: 10000000 INFO @ Tue, 16 Jun 2020 13:29:59: 6000000 INFO @ Tue, 16 Jun 2020 13:30:01: 2000000 INFO @ Tue, 16 Jun 2020 13:30:04: 11000000 INFO @ Tue, 16 Jun 2020 13:30:06: 7000000 INFO @ Tue, 16 Jun 2020 13:30:09: 3000000 INFO @ Tue, 16 Jun 2020 13:30:11: 12000000 INFO @ Tue, 16 Jun 2020 13:30:13: 8000000 INFO @ Tue, 16 Jun 2020 13:30:16: 4000000 INFO @ Tue, 16 Jun 2020 13:30:18: 13000000 INFO @ Tue, 16 Jun 2020 13:30:21: 9000000 INFO @ Tue, 16 Jun 2020 13:30:24: 5000000 INFO @ Tue, 16 Jun 2020 13:30:25: 14000000 INFO @ Tue, 16 Jun 2020 13:30:28: 10000000 INFO @ Tue, 16 Jun 2020 13:30:31: 6000000 INFO @ Tue, 16 Jun 2020 13:30:32: 15000000 INFO @ Tue, 16 Jun 2020 13:30:35: 11000000 INFO @ Tue, 16 Jun 2020 13:30:38: 7000000 INFO @ Tue, 16 Jun 2020 13:30:39: 16000000 INFO @ Tue, 16 Jun 2020 13:30:43: 12000000 INFO @ Tue, 16 Jun 2020 13:30:46: 8000000 INFO @ Tue, 16 Jun 2020 13:30:46: 17000000 INFO @ Tue, 16 Jun 2020 13:30:50: 13000000 INFO @ Tue, 16 Jun 2020 13:30:53: 18000000 INFO @ Tue, 16 Jun 2020 13:30:53: 9000000 INFO @ Tue, 16 Jun 2020 13:30:57: 14000000 INFO @ Tue, 16 Jun 2020 13:31:00: 19000000 INFO @ Tue, 16 Jun 2020 13:31:01: 10000000 INFO @ Tue, 16 Jun 2020 13:31:04: 15000000 INFO @ Tue, 16 Jun 2020 13:31:07: 20000000 INFO @ Tue, 16 Jun 2020 13:31:08: 11000000 INFO @ Tue, 16 Jun 2020 13:31:11: 16000000 INFO @ Tue, 16 Jun 2020 13:31:14: 21000000 INFO @ Tue, 16 Jun 2020 13:31:15: 12000000 INFO @ Tue, 16 Jun 2020 13:31:17: 17000000 INFO @ Tue, 16 Jun 2020 13:31:20: 22000000 INFO @ Tue, 16 Jun 2020 13:31:22: 13000000 INFO @ Tue, 16 Jun 2020 13:31:24: 18000000 INFO @ Tue, 16 Jun 2020 13:31:27: 23000000 INFO @ Tue, 16 Jun 2020 13:31:29: 14000000 INFO @ Tue, 16 Jun 2020 13:31:31: 19000000 INFO @ Tue, 16 Jun 2020 13:31:34: 24000000 INFO @ Tue, 16 Jun 2020 13:31:36: 15000000 INFO @ Tue, 16 Jun 2020 13:31:38: 20000000 INFO @ Tue, 16 Jun 2020 13:31:41: 25000000 INFO @ Tue, 16 Jun 2020 13:31:43: 16000000 INFO @ Tue, 16 Jun 2020 13:31:45: 21000000 INFO @ Tue, 16 Jun 2020 13:31:49: 26000000 INFO @ Tue, 16 Jun 2020 13:31:49: 17000000 INFO @ Tue, 16 Jun 2020 13:31:51: 22000000 INFO @ Tue, 16 Jun 2020 13:31:56: 27000000 INFO @ Tue, 16 Jun 2020 13:31:56: 18000000 INFO @ Tue, 16 Jun 2020 13:31:58: 23000000 INFO @ Tue, 16 Jun 2020 13:32:03: 28000000 INFO @ Tue, 16 Jun 2020 13:32:03: 19000000 INFO @ Tue, 16 Jun 2020 13:32:05: 24000000 INFO @ Tue, 16 Jun 2020 13:32:10: 20000000 INFO @ Tue, 16 Jun 2020 13:32:10: 29000000 INFO @ Tue, 16 Jun 2020 13:32:12: 25000000 INFO @ Tue, 16 Jun 2020 13:32:17: 30000000 INFO @ Tue, 16 Jun 2020 13:32:17: 21000000 INFO @ Tue, 16 Jun 2020 13:32:19: 26000000 INFO @ Tue, 16 Jun 2020 13:32:23: 31000000 INFO @ Tue, 16 Jun 2020 13:32:23: 22000000 INFO @ Tue, 16 Jun 2020 13:32:26: 27000000 INFO @ Tue, 16 Jun 2020 13:32:30: 32000000 INFO @ Tue, 16 Jun 2020 13:32:30: 23000000 INFO @ Tue, 16 Jun 2020 13:32:33: 28000000 INFO @ Tue, 16 Jun 2020 13:32:37: 33000000 INFO @ Tue, 16 Jun 2020 13:32:37: 24000000 INFO @ Tue, 16 Jun 2020 13:32:40: 29000000 INFO @ Tue, 16 Jun 2020 13:32:44: 34000000 INFO @ Tue, 16 Jun 2020 13:32:44: 25000000 INFO @ Tue, 16 Jun 2020 13:32:47: 30000000 INFO @ Tue, 16 Jun 2020 13:32:50: 35000000 INFO @ Tue, 16 Jun 2020 13:32:51: 26000000 INFO @ Tue, 16 Jun 2020 13:32:54: 31000000 INFO @ Tue, 16 Jun 2020 13:32:57: 36000000 INFO @ Tue, 16 Jun 2020 13:32:58: 27000000 INFO @ Tue, 16 Jun 2020 13:33:00: 32000000 INFO @ Tue, 16 Jun 2020 13:33:04: 37000000 INFO @ Tue, 16 Jun 2020 13:33:05: 28000000 INFO @ Tue, 16 Jun 2020 13:33:07: 33000000 INFO @ Tue, 16 Jun 2020 13:33:11: 38000000 INFO @ Tue, 16 Jun 2020 13:33:12: 29000000 INFO @ Tue, 16 Jun 2020 13:33:14: 34000000 INFO @ Tue, 16 Jun 2020 13:33:17: 39000000 INFO @ Tue, 16 Jun 2020 13:33:19: 30000000 INFO @ Tue, 16 Jun 2020 13:33:21: 35000000 INFO @ Tue, 16 Jun 2020 13:33:24: 40000000 INFO @ Tue, 16 Jun 2020 13:33:25: 31000000 INFO @ Tue, 16 Jun 2020 13:33:27: 36000000 INFO @ Tue, 16 Jun 2020 13:33:31: 41000000 INFO @ Tue, 16 Jun 2020 13:33:32: 32000000 INFO @ Tue, 16 Jun 2020 13:33:34: 37000000 INFO @ Tue, 16 Jun 2020 13:33:37: 42000000 INFO @ Tue, 16 Jun 2020 13:33:39: 33000000 INFO @ Tue, 16 Jun 2020 13:33:41: 38000000 INFO @ Tue, 16 Jun 2020 13:33:44: 43000000 INFO @ Tue, 16 Jun 2020 13:33:45: 34000000 INFO @ Tue, 16 Jun 2020 13:33:48: 39000000 INFO @ Tue, 16 Jun 2020 13:33:50: 44000000 INFO @ Tue, 16 Jun 2020 13:33:52: 35000000 INFO @ Tue, 16 Jun 2020 13:33:55: 40000000 INFO @ Tue, 16 Jun 2020 13:33:57: 45000000 INFO @ Tue, 16 Jun 2020 13:33:59: 36000000 INFO @ Tue, 16 Jun 2020 13:34:01: 41000000 INFO @ Tue, 16 Jun 2020 13:34:04: 46000000 INFO @ Tue, 16 Jun 2020 13:34:06: 37000000 INFO @ Tue, 16 Jun 2020 13:34:08: 42000000 INFO @ Tue, 16 Jun 2020 13:34:10: 47000000 INFO @ Tue, 16 Jun 2020 13:34:12: 38000000 INFO @ Tue, 16 Jun 2020 13:34:15: 43000000 INFO @ Tue, 16 Jun 2020 13:34:17: 48000000 INFO @ Tue, 16 Jun 2020 13:34:19: 39000000 INFO @ Tue, 16 Jun 2020 13:34:21: 44000000 INFO @ Tue, 16 Jun 2020 13:34:23: 49000000 INFO @ Tue, 16 Jun 2020 13:34:25: 40000000 INFO @ Tue, 16 Jun 2020 13:34:28: 45000000 INFO @ Tue, 16 Jun 2020 13:34:30: 50000000 INFO @ Tue, 16 Jun 2020 13:34:32: 41000000 INFO @ Tue, 16 Jun 2020 13:34:34: 46000000 INFO @ Tue, 16 Jun 2020 13:34:36: 51000000 INFO @ Tue, 16 Jun 2020 13:34:39: 42000000 INFO @ Tue, 16 Jun 2020 13:34:41: 47000000 INFO @ Tue, 16 Jun 2020 13:34:43: 52000000 INFO @ Tue, 16 Jun 2020 13:34:45: 43000000 INFO @ Tue, 16 Jun 2020 13:34:47: 48000000 INFO @ Tue, 16 Jun 2020 13:34:49: 53000000 INFO @ Tue, 16 Jun 2020 13:34:52: 44000000 INFO @ Tue, 16 Jun 2020 13:34:54: 49000000 INFO @ Tue, 16 Jun 2020 13:34:56: 54000000 INFO @ Tue, 16 Jun 2020 13:34:58: 45000000 INFO @ Tue, 16 Jun 2020 13:35:01: 50000000 INFO @ Tue, 16 Jun 2020 13:35:03: 55000000 INFO @ Tue, 16 Jun 2020 13:35:05: 46000000 INFO @ Tue, 16 Jun 2020 13:35:07: 51000000 INFO @ Tue, 16 Jun 2020 13:35:09: 56000000 INFO @ Tue, 16 Jun 2020 13:35:12: 47000000 INFO @ Tue, 16 Jun 2020 13:35:14: 52000000 INFO @ Tue, 16 Jun 2020 13:35:16: 57000000 INFO @ Tue, 16 Jun 2020 13:35:18: 48000000 INFO @ Tue, 16 Jun 2020 13:35:21: 53000000 INFO @ Tue, 16 Jun 2020 13:35:23: 58000000 INFO @ Tue, 16 Jun 2020 13:35:25: 49000000 INFO @ Tue, 16 Jun 2020 13:35:28: 54000000 INFO @ Tue, 16 Jun 2020 13:35:29: 59000000 INFO @ Tue, 16 Jun 2020 13:35:32: 50000000 INFO @ Tue, 16 Jun 2020 13:35:34: 55000000 INFO @ Tue, 16 Jun 2020 13:35:36: 60000000 INFO @ Tue, 16 Jun 2020 13:35:39: 51000000 INFO @ Tue, 16 Jun 2020 13:35:41: 56000000 INFO @ Tue, 16 Jun 2020 13:35:42: 61000000 INFO @ Tue, 16 Jun 2020 13:35:45: 52000000 INFO @ Tue, 16 Jun 2020 13:35:48: 57000000 INFO @ Tue, 16 Jun 2020 13:35:49: 62000000 INFO @ Tue, 16 Jun 2020 13:35:52: 53000000 INFO @ Tue, 16 Jun 2020 13:35:55: 58000000 INFO @ Tue, 16 Jun 2020 13:35:55: 63000000 INFO @ Tue, 16 Jun 2020 13:35:59: 54000000 INFO @ Tue, 16 Jun 2020 13:36:02: 59000000 INFO @ Tue, 16 Jun 2020 13:36:02: 64000000 INFO @ Tue, 16 Jun 2020 13:36:06: 55000000 INFO @ Tue, 16 Jun 2020 13:36:08: 60000000 INFO @ Tue, 16 Jun 2020 13:36:09: 65000000 INFO @ Tue, 16 Jun 2020 13:36:13: 56000000 INFO @ Tue, 16 Jun 2020 13:36:15: 61000000 INFO @ Tue, 16 Jun 2020 13:36:15: 66000000 INFO @ Tue, 16 Jun 2020 13:36:20: 57000000 INFO @ Tue, 16 Jun 2020 13:36:22: 62000000 INFO @ Tue, 16 Jun 2020 13:36:22: 67000000 INFO @ Tue, 16 Jun 2020 13:36:26: 58000000 INFO @ Tue, 16 Jun 2020 13:36:29: 63000000 INFO @ Tue, 16 Jun 2020 13:36:29: 68000000 INFO @ Tue, 16 Jun 2020 13:36:33: 59000000 INFO @ Tue, 16 Jun 2020 13:36:35: 64000000 INFO @ Tue, 16 Jun 2020 13:36:36: 69000000 INFO @ Tue, 16 Jun 2020 13:36:40: 60000000 INFO @ Tue, 16 Jun 2020 13:36:42: 65000000 INFO @ Tue, 16 Jun 2020 13:36:43: 70000000 INFO @ Tue, 16 Jun 2020 13:36:47: 61000000 INFO @ Tue, 16 Jun 2020 13:36:49: 66000000 INFO @ Tue, 16 Jun 2020 13:36:50: 71000000 INFO @ Tue, 16 Jun 2020 13:36:54: 62000000 INFO @ Tue, 16 Jun 2020 13:36:57: 67000000 INFO @ Tue, 16 Jun 2020 13:36:57: 72000000 INFO @ Tue, 16 Jun 2020 13:37:01: 63000000 INFO @ Tue, 16 Jun 2020 13:37:04: 68000000 INFO @ Tue, 16 Jun 2020 13:37:04: 73000000 INFO @ Tue, 16 Jun 2020 13:37:08: 64000000 INFO @ Tue, 16 Jun 2020 13:37:11: 69000000 INFO @ Tue, 16 Jun 2020 13:37:11: 74000000 INFO @ Tue, 16 Jun 2020 13:37:15: 65000000 INFO @ Tue, 16 Jun 2020 13:37:18: 70000000 INFO @ Tue, 16 Jun 2020 13:37:18: 75000000 INFO @ Tue, 16 Jun 2020 13:37:22: 66000000 INFO @ Tue, 16 Jun 2020 13:37:25: 76000000 INFO @ Tue, 16 Jun 2020 13:37:25: 71000000 INFO @ Tue, 16 Jun 2020 13:37:30: 67000000 INFO @ Tue, 16 Jun 2020 13:37:32: 77000000 INFO @ Tue, 16 Jun 2020 13:37:32: 72000000 INFO @ Tue, 16 Jun 2020 13:37:37: 68000000 INFO @ Tue, 16 Jun 2020 13:37:39: 73000000 INFO @ Tue, 16 Jun 2020 13:37:40: 78000000 INFO @ Tue, 16 Jun 2020 13:37:45: 69000000 INFO @ Tue, 16 Jun 2020 13:37:46: 74000000 INFO @ Tue, 16 Jun 2020 13:37:47: 79000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 13:37:52: 70000000 INFO @ Tue, 16 Jun 2020 13:37:54: 75000000 INFO @ Tue, 16 Jun 2020 13:37:54: 80000000 INFO @ Tue, 16 Jun 2020 13:38:00: 71000000 INFO @ Tue, 16 Jun 2020 13:38:01: 76000000 INFO @ Tue, 16 Jun 2020 13:38:01: 81000000 INFO @ Tue, 16 Jun 2020 13:38:07: 72000000 INFO @ Tue, 16 Jun 2020 13:38:08: 77000000 INFO @ Tue, 16 Jun 2020 13:38:08: 82000000 INFO @ Tue, 16 Jun 2020 13:38:14: 73000000 INFO @ Tue, 16 Jun 2020 13:38:15: 78000000 INFO @ Tue, 16 Jun 2020 13:38:15: 83000000 INFO @ Tue, 16 Jun 2020 13:38:21: 74000000 INFO @ Tue, 16 Jun 2020 13:38:22: 84000000 INFO @ Tue, 16 Jun 2020 13:38:22: 79000000 INFO @ Tue, 16 Jun 2020 13:38:29: 75000000 INFO @ Tue, 16 Jun 2020 13:38:29: 85000000 INFO @ Tue, 16 Jun 2020 13:38:29: 80000000 INFO @ Tue, 16 Jun 2020 13:38:36: 76000000 INFO @ Tue, 16 Jun 2020 13:38:36: 81000000 INFO @ Tue, 16 Jun 2020 13:38:37: 86000000 INFO @ Tue, 16 Jun 2020 13:38:43: 77000000 INFO @ Tue, 16 Jun 2020 13:38:43: 82000000 INFO @ Tue, 16 Jun 2020 13:38:46: 87000000 INFO @ Tue, 16 Jun 2020 13:38:50: 78000000 INFO @ Tue, 16 Jun 2020 13:38:50: 83000000 INFO @ Tue, 16 Jun 2020 13:38:54: 88000000 INFO @ Tue, 16 Jun 2020 13:38:57: 79000000 INFO @ Tue, 16 Jun 2020 13:38:57: 84000000 INFO @ Tue, 16 Jun 2020 13:39:04: 89000000 INFO @ Tue, 16 Jun 2020 13:39:04: 80000000 INFO @ Tue, 16 Jun 2020 13:39:05: 85000000 INFO @ Tue, 16 Jun 2020 13:39:11: 81000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 13:39:13: 90000000 INFO @ Tue, 16 Jun 2020 13:39:14: 86000000 INFO @ Tue, 16 Jun 2020 13:39:18: 82000000 INFO @ Tue, 16 Jun 2020 13:39:23: 91000000 INFO @ Tue, 16 Jun 2020 13:39:23: 87000000 INFO @ Tue, 16 Jun 2020 13:39:25: 83000000 INFO @ Tue, 16 Jun 2020 13:39:32: 92000000 INFO @ Tue, 16 Jun 2020 13:39:32: 84000000 INFO @ Tue, 16 Jun 2020 13:39:33: 88000000 INFO @ Tue, 16 Jun 2020 13:39:40: 85000000 INFO @ Tue, 16 Jun 2020 13:39:41: 93000000 INFO @ Tue, 16 Jun 2020 13:39:42: 89000000 INFO @ Tue, 16 Jun 2020 13:39:48: 86000000 INFO @ Tue, 16 Jun 2020 13:39:51: 94000000 INFO @ Tue, 16 Jun 2020 13:39:51: 90000000 INFO @ Tue, 16 Jun 2020 13:39:57: 87000000 INFO @ Tue, 16 Jun 2020 13:40:00: 95000000 INFO @ Tue, 16 Jun 2020 13:40:01: 91000000 INFO @ Tue, 16 Jun 2020 13:40:05: 88000000 INFO @ Tue, 16 Jun 2020 13:40:10: 96000000 INFO @ Tue, 16 Jun 2020 13:40:10: 92000000 INFO @ Tue, 16 Jun 2020 13:40:14: 89000000 INFO @ Tue, 16 Jun 2020 13:40:19: 97000000 INFO @ Tue, 16 Jun 2020 13:40:20: 93000000 INFO @ Tue, 16 Jun 2020 13:40:23: 90000000 INFO @ Tue, 16 Jun 2020 13:40:29: 98000000 INFO @ Tue, 16 Jun 2020 13:40:29: 94000000 INFO @ Tue, 16 Jun 2020 13:40:31: 91000000 INFO @ Tue, 16 Jun 2020 13:40:38: 95000000 INFO @ Tue, 16 Jun 2020 13:40:39: 99000000 INFO @ Tue, 16 Jun 2020 13:40:40: 92000000 INFO @ Tue, 16 Jun 2020 13:40:48: 96000000 INFO @ Tue, 16 Jun 2020 13:40:48: 100000000 INFO @ Tue, 16 Jun 2020 13:40:48: 93000000 INFO @ Tue, 16 Jun 2020 13:40:55: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 13:40:55: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 13:40:55: #1 total tags in treatment: 33669173 INFO @ Tue, 16 Jun 2020 13:40:55: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 13:40:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 13:40:56: #1 tags after filtering in treatment: 23909491 INFO @ Tue, 16 Jun 2020 13:40:56: #1 Redundant rate of treatment: 0.29 INFO @ Tue, 16 Jun 2020 13:40:56: #1 finished! INFO @ Tue, 16 Jun 2020 13:40:56: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 13:40:56: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 13:40:56: 97000000 INFO @ Tue, 16 Jun 2020 13:40:57: 94000000 INFO @ Tue, 16 Jun 2020 13:40:58: #2 number of paired peaks: 887 WARNING @ Tue, 16 Jun 2020 13:40:58: Fewer paired peaks (887) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 887 pairs to build model! INFO @ Tue, 16 Jun 2020 13:40:58: start model_add_line... INFO @ Tue, 16 Jun 2020 13:40:58: start X-correlation... INFO @ Tue, 16 Jun 2020 13:40:58: end of X-cor INFO @ Tue, 16 Jun 2020 13:40:58: #2 finished! INFO @ Tue, 16 Jun 2020 13:40:58: #2 predicted fragment length is 220 bps INFO @ Tue, 16 Jun 2020 13:40:58: #2 alternative fragment length(s) may be 3,220 bps INFO @ Tue, 16 Jun 2020 13:40:58: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619588/SRX6619588.05_model.r WARNING @ Tue, 16 Jun 2020 13:40:58: #2 Since the d (220) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 13:40:58: #2 You may need to consider one of the other alternative d(s): 3,220 WARNING @ Tue, 16 Jun 2020 13:40:58: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 13:40:58: #3 Call peaks... INFO @ Tue, 16 Jun 2020 13:40:58: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 13:41:05: 98000000 INFO @ Tue, 16 Jun 2020 13:41:05: 95000000 INFO @ Tue, 16 Jun 2020 13:41:13: 99000000 INFO @ Tue, 16 Jun 2020 13:41:14: 96000000 INFO @ Tue, 16 Jun 2020 13:41:22: 100000000 INFO @ Tue, 16 Jun 2020 13:41:22: 97000000 INFO @ Tue, 16 Jun 2020 13:41:29: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 13:41:29: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 13:41:29: #1 total tags in treatment: 33669173 INFO @ Tue, 16 Jun 2020 13:41:29: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 13:41:29: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 13:41:30: #1 tags after filtering in treatment: 23909491 INFO @ Tue, 16 Jun 2020 13:41:30: #1 Redundant rate of treatment: 0.29 INFO @ Tue, 16 Jun 2020 13:41:30: #1 finished! INFO @ Tue, 16 Jun 2020 13:41:30: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 13:41:30: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 13:41:30: 98000000 INFO @ Tue, 16 Jun 2020 13:41:31: #2 number of paired peaks: 887 WARNING @ Tue, 16 Jun 2020 13:41:31: Fewer paired peaks (887) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 887 pairs to build model! INFO @ Tue, 16 Jun 2020 13:41:31: start model_add_line... INFO @ Tue, 16 Jun 2020 13:41:32: start X-correlation... INFO @ Tue, 16 Jun 2020 13:41:32: end of X-cor INFO @ Tue, 16 Jun 2020 13:41:32: #2 finished! INFO @ Tue, 16 Jun 2020 13:41:32: #2 predicted fragment length is 220 bps INFO @ Tue, 16 Jun 2020 13:41:32: #2 alternative fragment length(s) may be 3,220 bps INFO @ Tue, 16 Jun 2020 13:41:32: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619588/SRX6619588.10_model.r WARNING @ Tue, 16 Jun 2020 13:41:32: #2 Since the d (220) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 13:41:32: #2 You may need to consider one of the other alternative d(s): 3,220 WARNING @ Tue, 16 Jun 2020 13:41:32: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 13:41:32: #3 Call peaks... INFO @ Tue, 16 Jun 2020 13:41:32: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 13:41:39: 99000000 INFO @ Tue, 16 Jun 2020 13:41:47: 100000000 INFO @ Tue, 16 Jun 2020 13:41:54: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 13:41:54: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 13:41:54: #1 total tags in treatment: 33669173 INFO @ Tue, 16 Jun 2020 13:41:54: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 13:41:54: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 13:41:55: #1 tags after filtering in treatment: 23909491 INFO @ Tue, 16 Jun 2020 13:41:55: #1 Redundant rate of treatment: 0.29 INFO @ Tue, 16 Jun 2020 13:41:55: #1 finished! INFO @ Tue, 16 Jun 2020 13:41:55: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 13:41:55: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 13:41:56: #2 number of paired peaks: 887 WARNING @ Tue, 16 Jun 2020 13:41:56: Fewer paired peaks (887) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 887 pairs to build model! INFO @ Tue, 16 Jun 2020 13:41:56: start model_add_line... INFO @ Tue, 16 Jun 2020 13:41:57: start X-correlation... INFO @ Tue, 16 Jun 2020 13:41:57: end of X-cor INFO @ Tue, 16 Jun 2020 13:41:57: #2 finished! INFO @ Tue, 16 Jun 2020 13:41:57: #2 predicted fragment length is 220 bps INFO @ Tue, 16 Jun 2020 13:41:57: #2 alternative fragment length(s) may be 3,220 bps INFO @ Tue, 16 Jun 2020 13:41:57: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619588/SRX6619588.20_model.r WARNING @ Tue, 16 Jun 2020 13:41:57: #2 Since the d (220) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 13:41:57: #2 You may need to consider one of the other alternative d(s): 3,220 WARNING @ Tue, 16 Jun 2020 13:41:57: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 13:41:57: #3 Call peaks... INFO @ Tue, 16 Jun 2020 13:41:57: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 13:42:07: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 13:42:33: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619588/SRX6619588.05_peaks.xls INFO @ Tue, 16 Jun 2020 13:42:33: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619588/SRX6619588.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 13:42:34: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619588/SRX6619588.05_summits.bed INFO @ Tue, 16 Jun 2020 13:42:34: Done! pass1 - making usageList (6 chroms): 2 millis pass2 - checking and writing primary data (13828 records, 4 fields): 60 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 13:42:40: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 13:43:04: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 13:43:06: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619588/SRX6619588.10_peaks.xls INFO @ Tue, 16 Jun 2020 13:43:06: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619588/SRX6619588.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 13:43:06: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619588/SRX6619588.10_summits.bed INFO @ Tue, 16 Jun 2020 13:43:06: Done! pass1 - making usageList (6 chroms): 2 millis pass2 - checking and writing primary data (7744 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 13:43:30: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619588/SRX6619588.20_peaks.xls INFO @ Tue, 16 Jun 2020 13:43:30: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619588/SRX6619588.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 13:43:30: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619588/SRX6619588.20_summits.bed INFO @ Tue, 16 Jun 2020 13:43:30: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (3078 records, 4 fields): 5 millis CompletedMACS2peakCalling