Job ID = 6368879 SRX = SRX6619576 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:31:46 prefetch.2.10.7: 1) Downloading 'SRR9866033'... 2020-06-16T00:31:46 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:39:47 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:39:47 prefetch.2.10.7: 1) 'SRR9866033' was downloaded successfully 2020-06-16T00:39:47 prefetch.2.10.7: 'SRR9866033' has 0 unresolved dependencies Read 29093932 spots for SRR9866033/SRR9866033.sra Written 29093932 spots for SRR9866033/SRR9866033.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:52:49 29093932 reads; of these: 29093932 (100.00%) were paired; of these: 15637156 (53.75%) aligned concordantly 0 times 11247156 (38.66%) aligned concordantly exactly 1 time 2209620 (7.59%) aligned concordantly >1 times ---- 15637156 pairs aligned concordantly 0 times; of these: 7700124 (49.24%) aligned discordantly 1 time ---- 7937032 pairs aligned 0 times concordantly or discordantly; of these: 15874064 mates make up the pairs; of these: 13419137 (84.53%) aligned 0 times 963036 (6.07%) aligned exactly 1 time 1491891 (9.40%) aligned >1 times 76.94% overall alignment rate Time searching: 00:52:49 Overall time: 00:52:49 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 2628824 / 20698659 = 0.1270 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 10:56:30: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619576/SRX6619576.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619576/SRX6619576.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619576/SRX6619576.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619576/SRX6619576.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 10:56:30: #1 read tag files... INFO @ Tue, 16 Jun 2020 10:56:30: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 10:56:38: 1000000 INFO @ Tue, 16 Jun 2020 10:56:46: 2000000 INFO @ Tue, 16 Jun 2020 10:56:53: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 10:57:00: 4000000 INFO @ Tue, 16 Jun 2020 10:57:00: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619576/SRX6619576.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619576/SRX6619576.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619576/SRX6619576.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619576/SRX6619576.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 10:57:00: #1 read tag files... INFO @ Tue, 16 Jun 2020 10:57:00: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 10:57:07: 5000000 INFO @ Tue, 16 Jun 2020 10:57:09: 1000000 INFO @ Tue, 16 Jun 2020 10:57:15: 6000000 INFO @ Tue, 16 Jun 2020 10:57:17: 2000000 INFO @ Tue, 16 Jun 2020 10:57:23: 7000000 INFO @ Tue, 16 Jun 2020 10:57:25: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 10:57:30: 8000000 INFO @ Tue, 16 Jun 2020 10:57:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619576/SRX6619576.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619576/SRX6619576.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619576/SRX6619576.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619576/SRX6619576.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 10:57:31: #1 read tag files... INFO @ Tue, 16 Jun 2020 10:57:31: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 10:57:32: 4000000 INFO @ Tue, 16 Jun 2020 10:57:38: 9000000 INFO @ Tue, 16 Jun 2020 10:57:39: 1000000 INFO @ Tue, 16 Jun 2020 10:57:40: 5000000 INFO @ Tue, 16 Jun 2020 10:57:45: 10000000 INFO @ Tue, 16 Jun 2020 10:57:47: 2000000 INFO @ Tue, 16 Jun 2020 10:57:48: 6000000 INFO @ Tue, 16 Jun 2020 10:57:53: 11000000 INFO @ Tue, 16 Jun 2020 10:57:55: 3000000 INFO @ Tue, 16 Jun 2020 10:57:55: 7000000 INFO @ Tue, 16 Jun 2020 10:58:01: 12000000 INFO @ Tue, 16 Jun 2020 10:58:03: 4000000 INFO @ Tue, 16 Jun 2020 10:58:03: 8000000 INFO @ Tue, 16 Jun 2020 10:58:08: 13000000 INFO @ Tue, 16 Jun 2020 10:58:10: 5000000 INFO @ Tue, 16 Jun 2020 10:58:11: 9000000 INFO @ Tue, 16 Jun 2020 10:58:16: 14000000 INFO @ Tue, 16 Jun 2020 10:58:18: 6000000 INFO @ Tue, 16 Jun 2020 10:58:18: 10000000 INFO @ Tue, 16 Jun 2020 10:58:24: 15000000 INFO @ Tue, 16 Jun 2020 10:58:25: 7000000 INFO @ Tue, 16 Jun 2020 10:58:26: 11000000 INFO @ Tue, 16 Jun 2020 10:58:31: 16000000 INFO @ Tue, 16 Jun 2020 10:58:33: 8000000 INFO @ Tue, 16 Jun 2020 10:58:34: 12000000 INFO @ Tue, 16 Jun 2020 10:58:39: 17000000 INFO @ Tue, 16 Jun 2020 10:58:41: 9000000 INFO @ Tue, 16 Jun 2020 10:58:42: 13000000 INFO @ Tue, 16 Jun 2020 10:58:46: 18000000 INFO @ Tue, 16 Jun 2020 10:58:48: 10000000 INFO @ Tue, 16 Jun 2020 10:58:49: 14000000 INFO @ Tue, 16 Jun 2020 10:58:54: 19000000 INFO @ Tue, 16 Jun 2020 10:58:56: 11000000 INFO @ Tue, 16 Jun 2020 10:58:57: 15000000 INFO @ Tue, 16 Jun 2020 10:59:01: 20000000 INFO @ Tue, 16 Jun 2020 10:59:03: 12000000 INFO @ Tue, 16 Jun 2020 10:59:04: 16000000 INFO @ Tue, 16 Jun 2020 10:59:09: 21000000 INFO @ Tue, 16 Jun 2020 10:59:11: 13000000 INFO @ Tue, 16 Jun 2020 10:59:12: 17000000 INFO @ Tue, 16 Jun 2020 10:59:16: 22000000 INFO @ Tue, 16 Jun 2020 10:59:18: 14000000 INFO @ Tue, 16 Jun 2020 10:59:19: 18000000 INFO @ Tue, 16 Jun 2020 10:59:23: 23000000 INFO @ Tue, 16 Jun 2020 10:59:26: 15000000 INFO @ Tue, 16 Jun 2020 10:59:27: 19000000 INFO @ Tue, 16 Jun 2020 10:59:31: 24000000 INFO @ Tue, 16 Jun 2020 10:59:33: 16000000 INFO @ Tue, 16 Jun 2020 10:59:35: 20000000 INFO @ Tue, 16 Jun 2020 10:59:38: 25000000 INFO @ Tue, 16 Jun 2020 10:59:41: 17000000 INFO @ Tue, 16 Jun 2020 10:59:42: 21000000 INFO @ Tue, 16 Jun 2020 10:59:46: 26000000 INFO @ Tue, 16 Jun 2020 10:59:48: 18000000 INFO @ Tue, 16 Jun 2020 10:59:50: 22000000 INFO @ Tue, 16 Jun 2020 10:59:53: 27000000 INFO @ Tue, 16 Jun 2020 10:59:56: 19000000 INFO @ Tue, 16 Jun 2020 10:59:57: 23000000 INFO @ Tue, 16 Jun 2020 11:00:01: 28000000 INFO @ Tue, 16 Jun 2020 11:00:04: 20000000 INFO @ Tue, 16 Jun 2020 11:00:05: 24000000 INFO @ Tue, 16 Jun 2020 11:00:08: 29000000 INFO @ Tue, 16 Jun 2020 11:00:11: 21000000 INFO @ Tue, 16 Jun 2020 11:00:12: 25000000 INFO @ Tue, 16 Jun 2020 11:00:16: 30000000 INFO @ Tue, 16 Jun 2020 11:00:18: 22000000 INFO @ Tue, 16 Jun 2020 11:00:20: 26000000 INFO @ Tue, 16 Jun 2020 11:00:23: 31000000 INFO @ Tue, 16 Jun 2020 11:00:26: 23000000 INFO @ Tue, 16 Jun 2020 11:00:27: 27000000 INFO @ Tue, 16 Jun 2020 11:00:31: 32000000 INFO @ Tue, 16 Jun 2020 11:00:33: 24000000 INFO @ Tue, 16 Jun 2020 11:00:35: 28000000 INFO @ Tue, 16 Jun 2020 11:00:38: 33000000 INFO @ Tue, 16 Jun 2020 11:00:41: 25000000 INFO @ Tue, 16 Jun 2020 11:00:42: 29000000 INFO @ Tue, 16 Jun 2020 11:00:46: 34000000 INFO @ Tue, 16 Jun 2020 11:00:48: 26000000 INFO @ Tue, 16 Jun 2020 11:00:49: 30000000 INFO @ Tue, 16 Jun 2020 11:00:53: 35000000 INFO @ Tue, 16 Jun 2020 11:00:55: 27000000 INFO @ Tue, 16 Jun 2020 11:00:57: 31000000 INFO @ Tue, 16 Jun 2020 11:01:00: 36000000 INFO @ Tue, 16 Jun 2020 11:01:03: 28000000 INFO @ Tue, 16 Jun 2020 11:01:04: 32000000 INFO @ Tue, 16 Jun 2020 11:01:08: 37000000 INFO @ Tue, 16 Jun 2020 11:01:10: 29000000 INFO @ Tue, 16 Jun 2020 11:01:12: 33000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:01:15: 38000000 INFO @ Tue, 16 Jun 2020 11:01:17: 30000000 INFO @ Tue, 16 Jun 2020 11:01:19: 34000000 INFO @ Tue, 16 Jun 2020 11:01:23: 39000000 INFO @ Tue, 16 Jun 2020 11:01:25: 31000000 INFO @ Tue, 16 Jun 2020 11:01:26: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:01:26: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:01:26: #1 total tags in treatment: 11652801 INFO @ Tue, 16 Jun 2020 11:01:26: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:01:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:01:27: #1 tags after filtering in treatment: 10204631 INFO @ Tue, 16 Jun 2020 11:01:27: #1 Redundant rate of treatment: 0.12 INFO @ Tue, 16 Jun 2020 11:01:27: #1 finished! INFO @ Tue, 16 Jun 2020 11:01:27: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:01:27: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:01:27: 35000000 INFO @ Tue, 16 Jun 2020 11:01:27: #2 number of paired peaks: 319 WARNING @ Tue, 16 Jun 2020 11:01:27: Fewer paired peaks (319) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 319 pairs to build model! INFO @ Tue, 16 Jun 2020 11:01:27: start model_add_line... INFO @ Tue, 16 Jun 2020 11:01:27: start X-correlation... INFO @ Tue, 16 Jun 2020 11:01:27: end of X-cor INFO @ Tue, 16 Jun 2020 11:01:27: #2 finished! INFO @ Tue, 16 Jun 2020 11:01:27: #2 predicted fragment length is 205 bps INFO @ Tue, 16 Jun 2020 11:01:27: #2 alternative fragment length(s) may be 205 bps INFO @ Tue, 16 Jun 2020 11:01:27: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619576/SRX6619576.05_model.r WARNING @ Tue, 16 Jun 2020 11:01:27: #2 Since the d (205) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:01:27: #2 You may need to consider one of the other alternative d(s): 205 WARNING @ Tue, 16 Jun 2020 11:01:27: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:01:27: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:01:27: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:01:32: 32000000 INFO @ Tue, 16 Jun 2020 11:01:34: 36000000 INFO @ Tue, 16 Jun 2020 11:01:39: 33000000 INFO @ Tue, 16 Jun 2020 11:01:41: 37000000 INFO @ Tue, 16 Jun 2020 11:01:47: 34000000 INFO @ Tue, 16 Jun 2020 11:01:49: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:01:49: 38000000 INFO @ Tue, 16 Jun 2020 11:01:54: 35000000 INFO @ Tue, 16 Jun 2020 11:01:57: 39000000 INFO @ Tue, 16 Jun 2020 11:01:59: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619576/SRX6619576.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:01:59: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619576/SRX6619576.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:01:59: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619576/SRX6619576.05_summits.bed INFO @ Tue, 16 Jun 2020 11:01:59: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (469 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:02:01: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:02:01: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:02:01: #1 total tags in treatment: 11652801 INFO @ Tue, 16 Jun 2020 11:02:01: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:02:01: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:02:01: #1 tags after filtering in treatment: 10204631 INFO @ Tue, 16 Jun 2020 11:02:01: #1 Redundant rate of treatment: 0.12 INFO @ Tue, 16 Jun 2020 11:02:01: #1 finished! INFO @ Tue, 16 Jun 2020 11:02:01: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:02:01: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:02:02: #2 number of paired peaks: 319 WARNING @ Tue, 16 Jun 2020 11:02:02: Fewer paired peaks (319) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 319 pairs to build model! INFO @ Tue, 16 Jun 2020 11:02:02: start model_add_line... INFO @ Tue, 16 Jun 2020 11:02:02: 36000000 INFO @ Tue, 16 Jun 2020 11:02:02: start X-correlation... INFO @ Tue, 16 Jun 2020 11:02:02: end of X-cor INFO @ Tue, 16 Jun 2020 11:02:02: #2 finished! INFO @ Tue, 16 Jun 2020 11:02:02: #2 predicted fragment length is 205 bps INFO @ Tue, 16 Jun 2020 11:02:02: #2 alternative fragment length(s) may be 205 bps INFO @ Tue, 16 Jun 2020 11:02:02: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619576/SRX6619576.10_model.r WARNING @ Tue, 16 Jun 2020 11:02:02: #2 Since the d (205) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:02:02: #2 You may need to consider one of the other alternative d(s): 205 WARNING @ Tue, 16 Jun 2020 11:02:02: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:02:02: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:02:02: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:02:09: 37000000 INFO @ Tue, 16 Jun 2020 11:02:16: 38000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:02:23: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:02:23: 39000000 INFO @ Tue, 16 Jun 2020 11:02:27: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:02:27: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:02:27: #1 total tags in treatment: 11652801 INFO @ Tue, 16 Jun 2020 11:02:27: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:02:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:02:27: #1 tags after filtering in treatment: 10204631 INFO @ Tue, 16 Jun 2020 11:02:27: #1 Redundant rate of treatment: 0.12 INFO @ Tue, 16 Jun 2020 11:02:27: #1 finished! INFO @ Tue, 16 Jun 2020 11:02:27: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:02:27: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:02:28: #2 number of paired peaks: 319 WARNING @ Tue, 16 Jun 2020 11:02:28: Fewer paired peaks (319) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 319 pairs to build model! INFO @ Tue, 16 Jun 2020 11:02:28: start model_add_line... INFO @ Tue, 16 Jun 2020 11:02:28: start X-correlation... INFO @ Tue, 16 Jun 2020 11:02:28: end of X-cor INFO @ Tue, 16 Jun 2020 11:02:28: #2 finished! INFO @ Tue, 16 Jun 2020 11:02:28: #2 predicted fragment length is 205 bps INFO @ Tue, 16 Jun 2020 11:02:28: #2 alternative fragment length(s) may be 205 bps INFO @ Tue, 16 Jun 2020 11:02:28: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619576/SRX6619576.20_model.r WARNING @ Tue, 16 Jun 2020 11:02:28: #2 Since the d (205) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:02:28: #2 You may need to consider one of the other alternative d(s): 205 WARNING @ Tue, 16 Jun 2020 11:02:28: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:02:28: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:02:28: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:02:33: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619576/SRX6619576.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:02:33: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619576/SRX6619576.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:02:33: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619576/SRX6619576.10_summits.bed INFO @ Tue, 16 Jun 2020 11:02:33: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (317 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:02:49: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:02:59: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619576/SRX6619576.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:02:59: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619576/SRX6619576.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:02:59: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619576/SRX6619576.20_summits.bed INFO @ Tue, 16 Jun 2020 11:02:59: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (214 records, 4 fields): 1 millis CompletedMACS2peakCalling