Job ID = 6368873 SRX = SRX6619570 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:40:03 prefetch.2.10.7: 1) Downloading 'SRR9866039'... 2020-06-16T00:40:03 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:54:49 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:54:49 prefetch.2.10.7: 1) 'SRR9866039' was downloaded successfully 2020-06-16T00:54:49 prefetch.2.10.7: 'SRR9866039' has 0 unresolved dependencies Read 40085238 spots for SRR9866039/SRR9866039.sra Written 40085238 spots for SRR9866039/SRR9866039.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:10:59 40085238 reads; of these: 40085238 (100.00%) were paired; of these: 26022893 (64.92%) aligned concordantly 0 times 11649732 (29.06%) aligned concordantly exactly 1 time 2412613 (6.02%) aligned concordantly >1 times ---- 26022893 pairs aligned concordantly 0 times; of these: 11339565 (43.58%) aligned discordantly 1 time ---- 14683328 pairs aligned 0 times concordantly or discordantly; of these: 29366656 mates make up the pairs; of these: 26462405 (90.11%) aligned 0 times 1037614 (3.53%) aligned exactly 1 time 1866637 (6.36%) aligned >1 times 66.99% overall alignment rate Time searching: 01:10:59 Overall time: 01:10:59 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 3762603 / 24881286 = 0.1512 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:35:20: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619570/SRX6619570.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619570/SRX6619570.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619570/SRX6619570.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619570/SRX6619570.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:35:20: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:35:20: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:35:29: 1000000 INFO @ Tue, 16 Jun 2020 11:35:39: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:35:48: 3000000 INFO @ Tue, 16 Jun 2020 11:35:49: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619570/SRX6619570.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619570/SRX6619570.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619570/SRX6619570.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619570/SRX6619570.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:35:49: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:35:49: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:35:59: 4000000 INFO @ Tue, 16 Jun 2020 11:36:00: 1000000 INFO @ Tue, 16 Jun 2020 11:36:09: 5000000 INFO @ Tue, 16 Jun 2020 11:36:10: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:36:19: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619570/SRX6619570.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619570/SRX6619570.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619570/SRX6619570.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619570/SRX6619570.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:36:19: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:36:19: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:36:20: 6000000 INFO @ Tue, 16 Jun 2020 11:36:21: 3000000 INFO @ Tue, 16 Jun 2020 11:36:30: 1000000 INFO @ Tue, 16 Jun 2020 11:36:30: 7000000 INFO @ Tue, 16 Jun 2020 11:36:31: 4000000 INFO @ Tue, 16 Jun 2020 11:36:41: 2000000 INFO @ Tue, 16 Jun 2020 11:36:41: 8000000 INFO @ Tue, 16 Jun 2020 11:36:42: 5000000 INFO @ Tue, 16 Jun 2020 11:36:52: 3000000 INFO @ Tue, 16 Jun 2020 11:36:52: 9000000 INFO @ Tue, 16 Jun 2020 11:36:53: 6000000 INFO @ Tue, 16 Jun 2020 11:37:03: 4000000 INFO @ Tue, 16 Jun 2020 11:37:03: 10000000 INFO @ Tue, 16 Jun 2020 11:37:04: 7000000 INFO @ Tue, 16 Jun 2020 11:37:13: 5000000 INFO @ Tue, 16 Jun 2020 11:37:15: 11000000 INFO @ Tue, 16 Jun 2020 11:37:15: 8000000 INFO @ Tue, 16 Jun 2020 11:37:24: 6000000 INFO @ Tue, 16 Jun 2020 11:37:26: 9000000 INFO @ Tue, 16 Jun 2020 11:37:26: 12000000 INFO @ Tue, 16 Jun 2020 11:37:35: 7000000 INFO @ Tue, 16 Jun 2020 11:37:36: 10000000 INFO @ Tue, 16 Jun 2020 11:37:36: 13000000 INFO @ Tue, 16 Jun 2020 11:37:46: 8000000 INFO @ Tue, 16 Jun 2020 11:37:47: 11000000 INFO @ Tue, 16 Jun 2020 11:37:47: 14000000 INFO @ Tue, 16 Jun 2020 11:37:57: 9000000 INFO @ Tue, 16 Jun 2020 11:37:58: 12000000 INFO @ Tue, 16 Jun 2020 11:37:58: 15000000 INFO @ Tue, 16 Jun 2020 11:38:08: 10000000 INFO @ Tue, 16 Jun 2020 11:38:09: 13000000 INFO @ Tue, 16 Jun 2020 11:38:09: 16000000 INFO @ Tue, 16 Jun 2020 11:38:18: 11000000 INFO @ Tue, 16 Jun 2020 11:38:19: 14000000 INFO @ Tue, 16 Jun 2020 11:38:20: 17000000 INFO @ Tue, 16 Jun 2020 11:38:29: 12000000 INFO @ Tue, 16 Jun 2020 11:38:30: 15000000 INFO @ Tue, 16 Jun 2020 11:38:31: 18000000 INFO @ Tue, 16 Jun 2020 11:38:40: 13000000 INFO @ Tue, 16 Jun 2020 11:38:41: 16000000 INFO @ Tue, 16 Jun 2020 11:38:42: 19000000 INFO @ Tue, 16 Jun 2020 11:38:51: 14000000 INFO @ Tue, 16 Jun 2020 11:38:52: 17000000 INFO @ Tue, 16 Jun 2020 11:38:53: 20000000 INFO @ Tue, 16 Jun 2020 11:39:02: 15000000 INFO @ Tue, 16 Jun 2020 11:39:02: 18000000 INFO @ Tue, 16 Jun 2020 11:39:04: 21000000 INFO @ Tue, 16 Jun 2020 11:39:13: 19000000 INFO @ Tue, 16 Jun 2020 11:39:13: 16000000 INFO @ Tue, 16 Jun 2020 11:39:15: 22000000 INFO @ Tue, 16 Jun 2020 11:39:24: 20000000 INFO @ Tue, 16 Jun 2020 11:39:24: 17000000 INFO @ Tue, 16 Jun 2020 11:39:26: 23000000 INFO @ Tue, 16 Jun 2020 11:39:35: 21000000 INFO @ Tue, 16 Jun 2020 11:39:35: 18000000 INFO @ Tue, 16 Jun 2020 11:39:37: 24000000 INFO @ Tue, 16 Jun 2020 11:39:45: 22000000 INFO @ Tue, 16 Jun 2020 11:39:45: 19000000 INFO @ Tue, 16 Jun 2020 11:39:47: 25000000 INFO @ Tue, 16 Jun 2020 11:39:56: 23000000 INFO @ Tue, 16 Jun 2020 11:39:56: 20000000 INFO @ Tue, 16 Jun 2020 11:39:58: 26000000 INFO @ Tue, 16 Jun 2020 11:40:06: 24000000 INFO @ Tue, 16 Jun 2020 11:40:07: 21000000 INFO @ Tue, 16 Jun 2020 11:40:09: 27000000 INFO @ Tue, 16 Jun 2020 11:40:17: 25000000 INFO @ Tue, 16 Jun 2020 11:40:18: 22000000 INFO @ Tue, 16 Jun 2020 11:40:20: 28000000 INFO @ Tue, 16 Jun 2020 11:40:28: 26000000 INFO @ Tue, 16 Jun 2020 11:40:29: 23000000 INFO @ Tue, 16 Jun 2020 11:40:31: 29000000 INFO @ Tue, 16 Jun 2020 11:40:38: 27000000 INFO @ Tue, 16 Jun 2020 11:40:40: 24000000 INFO @ Tue, 16 Jun 2020 11:40:42: 30000000 INFO @ Tue, 16 Jun 2020 11:40:49: 28000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:40:51: 25000000 INFO @ Tue, 16 Jun 2020 11:40:54: 31000000 INFO @ Tue, 16 Jun 2020 11:41:01: 29000000 INFO @ Tue, 16 Jun 2020 11:41:03: 26000000 INFO @ Tue, 16 Jun 2020 11:41:05: 32000000 INFO @ Tue, 16 Jun 2020 11:41:12: 30000000 INFO @ Tue, 16 Jun 2020 11:41:14: 27000000 INFO @ Tue, 16 Jun 2020 11:41:16: 33000000 INFO @ Tue, 16 Jun 2020 11:41:23: 31000000 INFO @ Tue, 16 Jun 2020 11:41:26: 28000000 INFO @ Tue, 16 Jun 2020 11:41:27: 34000000 INFO @ Tue, 16 Jun 2020 11:41:34: 32000000 INFO @ Tue, 16 Jun 2020 11:41:37: 29000000 INFO @ Tue, 16 Jun 2020 11:41:38: 35000000 INFO @ Tue, 16 Jun 2020 11:41:45: 33000000 INFO @ Tue, 16 Jun 2020 11:41:48: 30000000 INFO @ Tue, 16 Jun 2020 11:41:49: 36000000 INFO @ Tue, 16 Jun 2020 11:41:56: 34000000 INFO @ Tue, 16 Jun 2020 11:41:59: 31000000 INFO @ Tue, 16 Jun 2020 11:42:00: 37000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:42:06: 35000000 INFO @ Tue, 16 Jun 2020 11:42:10: 32000000 INFO @ Tue, 16 Jun 2020 11:42:11: 38000000 INFO @ Tue, 16 Jun 2020 11:42:17: 36000000 INFO @ Tue, 16 Jun 2020 11:42:21: 33000000 INFO @ Tue, 16 Jun 2020 11:42:22: 39000000 INFO @ Tue, 16 Jun 2020 11:42:28: 37000000 INFO @ Tue, 16 Jun 2020 11:42:32: 34000000 INFO @ Tue, 16 Jun 2020 11:42:33: 40000000 INFO @ Tue, 16 Jun 2020 11:42:38: 38000000 INFO @ Tue, 16 Jun 2020 11:42:42: 35000000 INFO @ Tue, 16 Jun 2020 11:42:44: 41000000 INFO @ Tue, 16 Jun 2020 11:42:49: 39000000 INFO @ Tue, 16 Jun 2020 11:42:53: 36000000 INFO @ Tue, 16 Jun 2020 11:42:55: 42000000 INFO @ Tue, 16 Jun 2020 11:43:00: 40000000 INFO @ Tue, 16 Jun 2020 11:43:04: 37000000 INFO @ Tue, 16 Jun 2020 11:43:05: 43000000 INFO @ Tue, 16 Jun 2020 11:43:11: 41000000 INFO @ Tue, 16 Jun 2020 11:43:15: 38000000 INFO @ Tue, 16 Jun 2020 11:43:16: 44000000 INFO @ Tue, 16 Jun 2020 11:43:21: 42000000 INFO @ Tue, 16 Jun 2020 11:43:25: 39000000 INFO @ Tue, 16 Jun 2020 11:43:26: 45000000 INFO @ Tue, 16 Jun 2020 11:43:31: 43000000 INFO @ Tue, 16 Jun 2020 11:43:36: 40000000 INFO @ Tue, 16 Jun 2020 11:43:37: 46000000 INFO @ Tue, 16 Jun 2020 11:43:39: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:43:39: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:43:39: #1 total tags in treatment: 11761727 INFO @ Tue, 16 Jun 2020 11:43:39: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:43:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:43:39: #1 tags after filtering in treatment: 10058399 INFO @ Tue, 16 Jun 2020 11:43:39: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:43:39: #1 finished! INFO @ Tue, 16 Jun 2020 11:43:39: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:43:39: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:43:40: #2 number of paired peaks: 298 WARNING @ Tue, 16 Jun 2020 11:43:40: Fewer paired peaks (298) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 298 pairs to build model! INFO @ Tue, 16 Jun 2020 11:43:40: start model_add_line... INFO @ Tue, 16 Jun 2020 11:43:40: start X-correlation... INFO @ Tue, 16 Jun 2020 11:43:40: end of X-cor INFO @ Tue, 16 Jun 2020 11:43:40: #2 finished! INFO @ Tue, 16 Jun 2020 11:43:40: #2 predicted fragment length is 220 bps INFO @ Tue, 16 Jun 2020 11:43:40: #2 alternative fragment length(s) may be 220 bps INFO @ Tue, 16 Jun 2020 11:43:40: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619570/SRX6619570.05_model.r WARNING @ Tue, 16 Jun 2020 11:43:40: #2 Since the d (220) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:43:40: #2 You may need to consider one of the other alternative d(s): 220 WARNING @ Tue, 16 Jun 2020 11:43:40: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:43:40: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:43:40: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:43:42: 44000000 INFO @ Tue, 16 Jun 2020 11:43:46: 41000000 INFO @ Tue, 16 Jun 2020 11:43:52: 45000000 INFO @ Tue, 16 Jun 2020 11:43:56: 42000000 INFO @ Tue, 16 Jun 2020 11:44:02: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:44:02: 46000000 INFO @ Tue, 16 Jun 2020 11:44:04: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:44:04: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:44:04: #1 total tags in treatment: 11761727 INFO @ Tue, 16 Jun 2020 11:44:04: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:44:04: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:44:04: #1 tags after filtering in treatment: 10058399 INFO @ Tue, 16 Jun 2020 11:44:04: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:44:04: #1 finished! INFO @ Tue, 16 Jun 2020 11:44:04: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:44:04: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:44:05: #2 number of paired peaks: 298 WARNING @ Tue, 16 Jun 2020 11:44:05: Fewer paired peaks (298) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 298 pairs to build model! INFO @ Tue, 16 Jun 2020 11:44:05: start model_add_line... INFO @ Tue, 16 Jun 2020 11:44:05: start X-correlation... INFO @ Tue, 16 Jun 2020 11:44:05: end of X-cor INFO @ Tue, 16 Jun 2020 11:44:05: #2 finished! INFO @ Tue, 16 Jun 2020 11:44:05: #2 predicted fragment length is 220 bps INFO @ Tue, 16 Jun 2020 11:44:05: #2 alternative fragment length(s) may be 220 bps INFO @ Tue, 16 Jun 2020 11:44:05: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619570/SRX6619570.10_model.r WARNING @ Tue, 16 Jun 2020 11:44:05: #2 Since the d (220) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:44:05: #2 You may need to consider one of the other alternative d(s): 220 WARNING @ Tue, 16 Jun 2020 11:44:05: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:44:05: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:44:05: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:44:06: 43000000 INFO @ Tue, 16 Jun 2020 11:44:12: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619570/SRX6619570.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:44:12: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619570/SRX6619570.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:44:12: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619570/SRX6619570.05_summits.bed INFO @ Tue, 16 Jun 2020 11:44:12: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (488 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:44:16: 44000000 INFO @ Tue, 16 Jun 2020 11:44:24: 45000000 INFO @ Tue, 16 Jun 2020 11:44:26: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:44:33: 46000000 INFO @ Tue, 16 Jun 2020 11:44:35: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:44:35: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:44:35: #1 total tags in treatment: 11761727 INFO @ Tue, 16 Jun 2020 11:44:35: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:44:35: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:44:35: #1 tags after filtering in treatment: 10058399 INFO @ Tue, 16 Jun 2020 11:44:35: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:44:35: #1 finished! INFO @ Tue, 16 Jun 2020 11:44:35: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:44:35: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:44:36: #2 number of paired peaks: 298 WARNING @ Tue, 16 Jun 2020 11:44:36: Fewer paired peaks (298) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 298 pairs to build model! INFO @ Tue, 16 Jun 2020 11:44:36: start model_add_line... INFO @ Tue, 16 Jun 2020 11:44:36: start X-correlation... INFO @ Tue, 16 Jun 2020 11:44:36: end of X-cor INFO @ Tue, 16 Jun 2020 11:44:36: #2 finished! INFO @ Tue, 16 Jun 2020 11:44:36: #2 predicted fragment length is 220 bps INFO @ Tue, 16 Jun 2020 11:44:36: #2 alternative fragment length(s) may be 220 bps INFO @ Tue, 16 Jun 2020 11:44:36: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619570/SRX6619570.20_model.r WARNING @ Tue, 16 Jun 2020 11:44:36: #2 Since the d (220) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:44:36: #2 You may need to consider one of the other alternative d(s): 220 WARNING @ Tue, 16 Jun 2020 11:44:36: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:44:36: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:44:36: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:44:36: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619570/SRX6619570.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:44:36: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619570/SRX6619570.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:44:36: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619570/SRX6619570.10_summits.bed INFO @ Tue, 16 Jun 2020 11:44:36: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (335 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:44:57: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:45:07: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619570/SRX6619570.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:45:07: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619570/SRX6619570.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:45:07: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619570/SRX6619570.20_summits.bed INFO @ Tue, 16 Jun 2020 11:45:07: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (221 records, 4 fields): 1 millis CompletedMACS2peakCalling