Job ID = 6368871 SRX = SRX6619569 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:31:45 prefetch.2.10.7: 1) Downloading 'SRR9866040'... 2020-06-16T00:31:45 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:51:24 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:51:24 prefetch.2.10.7: 1) 'SRR9866040' was downloaded successfully 2020-06-16T00:51:24 prefetch.2.10.7: 'SRR9866040' has 0 unresolved dependencies Read 29557988 spots for SRR9866040/SRR9866040.sra Written 29557988 spots for SRR9866040/SRR9866040.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:14:35 29557988 reads; of these: 29557988 (100.00%) were paired; of these: 9371467 (31.71%) aligned concordantly 0 times 15076897 (51.01%) aligned concordantly exactly 1 time 5109624 (17.29%) aligned concordantly >1 times ---- 9371467 pairs aligned concordantly 0 times; of these: 4116543 (43.93%) aligned discordantly 1 time ---- 5254924 pairs aligned 0 times concordantly or discordantly; of these: 10509848 mates make up the pairs; of these: 8354224 (79.49%) aligned 0 times 705947 (6.72%) aligned exactly 1 time 1449677 (13.79%) aligned >1 times 85.87% overall alignment rate Time searching: 01:14:36 Overall time: 01:14:36 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 3244797 / 23972332 = 0.1354 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:34:32: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619569/SRX6619569.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619569/SRX6619569.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619569/SRX6619569.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619569/SRX6619569.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:34:32: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:34:32: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:34:39: 1000000 INFO @ Tue, 16 Jun 2020 11:34:47: 2000000 INFO @ Tue, 16 Jun 2020 11:34:54: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:35:01: 4000000 INFO @ Tue, 16 Jun 2020 11:35:02: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619569/SRX6619569.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619569/SRX6619569.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619569/SRX6619569.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619569/SRX6619569.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:35:02: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:35:02: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:35:08: 5000000 INFO @ Tue, 16 Jun 2020 11:35:12: 1000000 INFO @ Tue, 16 Jun 2020 11:35:16: 6000000 INFO @ Tue, 16 Jun 2020 11:35:21: 2000000 INFO @ Tue, 16 Jun 2020 11:35:24: 7000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:35:31: 3000000 INFO @ Tue, 16 Jun 2020 11:35:32: 8000000 INFO @ Tue, 16 Jun 2020 11:35:33: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619569/SRX6619569.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619569/SRX6619569.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619569/SRX6619569.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619569/SRX6619569.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:35:33: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:35:33: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:35:40: 9000000 INFO @ Tue, 16 Jun 2020 11:35:40: 4000000 INFO @ Tue, 16 Jun 2020 11:35:41: 1000000 INFO @ Tue, 16 Jun 2020 11:35:48: 10000000 INFO @ Tue, 16 Jun 2020 11:35:49: 2000000 INFO @ Tue, 16 Jun 2020 11:35:49: 5000000 INFO @ Tue, 16 Jun 2020 11:35:56: 11000000 INFO @ Tue, 16 Jun 2020 11:35:57: 3000000 INFO @ Tue, 16 Jun 2020 11:35:58: 6000000 INFO @ Tue, 16 Jun 2020 11:36:04: 12000000 INFO @ Tue, 16 Jun 2020 11:36:05: 4000000 INFO @ Tue, 16 Jun 2020 11:36:07: 7000000 INFO @ Tue, 16 Jun 2020 11:36:12: 13000000 INFO @ Tue, 16 Jun 2020 11:36:13: 5000000 INFO @ Tue, 16 Jun 2020 11:36:16: 8000000 INFO @ Tue, 16 Jun 2020 11:36:20: 14000000 INFO @ Tue, 16 Jun 2020 11:36:20: 6000000 INFO @ Tue, 16 Jun 2020 11:36:26: 9000000 INFO @ Tue, 16 Jun 2020 11:36:28: 15000000 INFO @ Tue, 16 Jun 2020 11:36:28: 7000000 INFO @ Tue, 16 Jun 2020 11:36:35: 10000000 INFO @ Tue, 16 Jun 2020 11:36:35: 16000000 INFO @ Tue, 16 Jun 2020 11:36:36: 8000000 INFO @ Tue, 16 Jun 2020 11:36:43: 17000000 INFO @ Tue, 16 Jun 2020 11:36:44: 11000000 INFO @ Tue, 16 Jun 2020 11:36:44: 9000000 INFO @ Tue, 16 Jun 2020 11:36:51: 18000000 INFO @ Tue, 16 Jun 2020 11:36:52: 10000000 INFO @ Tue, 16 Jun 2020 11:36:53: 12000000 INFO @ Tue, 16 Jun 2020 11:36:59: 19000000 INFO @ Tue, 16 Jun 2020 11:37:00: 11000000 INFO @ Tue, 16 Jun 2020 11:37:02: 13000000 INFO @ Tue, 16 Jun 2020 11:37:07: 20000000 INFO @ Tue, 16 Jun 2020 11:37:08: 12000000 INFO @ Tue, 16 Jun 2020 11:37:11: 14000000 INFO @ Tue, 16 Jun 2020 11:37:14: 21000000 INFO @ Tue, 16 Jun 2020 11:37:16: 13000000 INFO @ Tue, 16 Jun 2020 11:37:21: 15000000 INFO @ Tue, 16 Jun 2020 11:37:22: 22000000 INFO @ Tue, 16 Jun 2020 11:37:24: 14000000 INFO @ Tue, 16 Jun 2020 11:37:30: 16000000 INFO @ Tue, 16 Jun 2020 11:37:30: 23000000 INFO @ Tue, 16 Jun 2020 11:37:32: 15000000 INFO @ Tue, 16 Jun 2020 11:37:38: 24000000 INFO @ Tue, 16 Jun 2020 11:37:38: 17000000 INFO @ Tue, 16 Jun 2020 11:37:39: 16000000 INFO @ Tue, 16 Jun 2020 11:37:45: 25000000 INFO @ Tue, 16 Jun 2020 11:37:47: 17000000 INFO @ Tue, 16 Jun 2020 11:37:48: 18000000 INFO @ Tue, 16 Jun 2020 11:37:54: 26000000 INFO @ Tue, 16 Jun 2020 11:37:55: 18000000 INFO @ Tue, 16 Jun 2020 11:37:57: 19000000 INFO @ Tue, 16 Jun 2020 11:38:03: 19000000 INFO @ Tue, 16 Jun 2020 11:38:03: 27000000 INFO @ Tue, 16 Jun 2020 11:38:06: 20000000 INFO @ Tue, 16 Jun 2020 11:38:10: 20000000 INFO @ Tue, 16 Jun 2020 11:38:12: 28000000 INFO @ Tue, 16 Jun 2020 11:38:15: 21000000 INFO @ Tue, 16 Jun 2020 11:38:18: 21000000 INFO @ Tue, 16 Jun 2020 11:38:21: 29000000 INFO @ Tue, 16 Jun 2020 11:38:24: 22000000 INFO @ Tue, 16 Jun 2020 11:38:25: 22000000 INFO @ Tue, 16 Jun 2020 11:38:31: 30000000 INFO @ Tue, 16 Jun 2020 11:38:33: 23000000 INFO @ Tue, 16 Jun 2020 11:38:33: 23000000 INFO @ Tue, 16 Jun 2020 11:38:40: 31000000 INFO @ Tue, 16 Jun 2020 11:38:42: 24000000 INFO @ Tue, 16 Jun 2020 11:38:42: 24000000 INFO @ Tue, 16 Jun 2020 11:38:50: 32000000 INFO @ Tue, 16 Jun 2020 11:38:51: 25000000 INFO @ Tue, 16 Jun 2020 11:38:52: 25000000 INFO @ Tue, 16 Jun 2020 11:38:59: 33000000 INFO @ Tue, 16 Jun 2020 11:39:01: 26000000 INFO @ Tue, 16 Jun 2020 11:39:01: 26000000 INFO @ Tue, 16 Jun 2020 11:39:09: 34000000 INFO @ Tue, 16 Jun 2020 11:39:09: 27000000 INFO @ Tue, 16 Jun 2020 11:39:10: 27000000 INFO @ Tue, 16 Jun 2020 11:39:18: 28000000 INFO @ Tue, 16 Jun 2020 11:39:18: 35000000 INFO @ Tue, 16 Jun 2020 11:39:20: 28000000 INFO @ Tue, 16 Jun 2020 11:39:26: 29000000 INFO @ Tue, 16 Jun 2020 11:39:28: 36000000 INFO @ Tue, 16 Jun 2020 11:39:30: 29000000 INFO @ Tue, 16 Jun 2020 11:39:34: 30000000 INFO @ Tue, 16 Jun 2020 11:39:37: 37000000 INFO @ Tue, 16 Jun 2020 11:39:39: 30000000 INFO @ Tue, 16 Jun 2020 11:39:43: 31000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:39:47: 38000000 INFO @ Tue, 16 Jun 2020 11:39:49: 31000000 INFO @ Tue, 16 Jun 2020 11:39:51: 32000000 INFO @ Tue, 16 Jun 2020 11:39:56: 39000000 INFO @ Tue, 16 Jun 2020 11:39:58: 32000000 INFO @ Tue, 16 Jun 2020 11:39:59: 33000000 INFO @ Tue, 16 Jun 2020 11:40:05: 40000000 INFO @ Tue, 16 Jun 2020 11:40:07: 34000000 INFO @ Tue, 16 Jun 2020 11:40:08: 33000000 INFO @ Tue, 16 Jun 2020 11:40:14: 41000000 INFO @ Tue, 16 Jun 2020 11:40:16: 35000000 INFO @ Tue, 16 Jun 2020 11:40:17: 34000000 INFO @ Tue, 16 Jun 2020 11:40:23: 42000000 INFO @ Tue, 16 Jun 2020 11:40:24: 36000000 INFO @ Tue, 16 Jun 2020 11:40:27: 35000000 INFO @ Tue, 16 Jun 2020 11:40:32: 37000000 INFO @ Tue, 16 Jun 2020 11:40:32: 43000000 INFO @ Tue, 16 Jun 2020 11:40:36: 36000000 INFO @ Tue, 16 Jun 2020 11:40:40: 38000000 INFO @ Tue, 16 Jun 2020 11:40:42: 44000000 INFO @ Tue, 16 Jun 2020 11:40:45: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:40:45: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:40:45: #1 total tags in treatment: 17313341 INFO @ Tue, 16 Jun 2020 11:40:45: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:40:45: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:40:45: #1 tags after filtering in treatment: 13703525 INFO @ Tue, 16 Jun 2020 11:40:45: #1 Redundant rate of treatment: 0.21 INFO @ Tue, 16 Jun 2020 11:40:45: #1 finished! INFO @ Tue, 16 Jun 2020 11:40:45: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:40:45: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:40:45: 37000000 INFO @ Tue, 16 Jun 2020 11:40:46: #2 number of paired peaks: 439 WARNING @ Tue, 16 Jun 2020 11:40:46: Fewer paired peaks (439) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 439 pairs to build model! INFO @ Tue, 16 Jun 2020 11:40:46: start model_add_line... INFO @ Tue, 16 Jun 2020 11:40:46: start X-correlation... INFO @ Tue, 16 Jun 2020 11:40:46: end of X-cor INFO @ Tue, 16 Jun 2020 11:40:46: #2 finished! INFO @ Tue, 16 Jun 2020 11:40:46: #2 predicted fragment length is 194 bps INFO @ Tue, 16 Jun 2020 11:40:46: #2 alternative fragment length(s) may be 4,194,202 bps INFO @ Tue, 16 Jun 2020 11:40:46: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619569/SRX6619569.05_model.r WARNING @ Tue, 16 Jun 2020 11:40:46: #2 Since the d (194) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:40:46: #2 You may need to consider one of the other alternative d(s): 4,194,202 WARNING @ Tue, 16 Jun 2020 11:40:46: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:40:46: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:40:46: #3 Pre-compute pvalue-qvalue table... BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:40:48: 39000000 INFO @ Tue, 16 Jun 2020 11:40:55: 38000000 INFO @ Tue, 16 Jun 2020 11:40:56: 40000000 INFO @ Tue, 16 Jun 2020 11:41:04: 39000000 INFO @ Tue, 16 Jun 2020 11:41:04: 41000000 INFO @ Tue, 16 Jun 2020 11:41:12: 42000000 INFO @ Tue, 16 Jun 2020 11:41:13: 40000000 INFO @ Tue, 16 Jun 2020 11:41:15: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:41:20: 43000000 INFO @ Tue, 16 Jun 2020 11:41:22: 41000000 INFO @ Tue, 16 Jun 2020 11:41:28: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619569/SRX6619569.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:41:28: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619569/SRX6619569.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:41:28: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619569/SRX6619569.05_summits.bed INFO @ Tue, 16 Jun 2020 11:41:28: Done! INFO @ Tue, 16 Jun 2020 11:41:28: 44000000 pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (662 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:41:31: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:41:31: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:41:31: #1 total tags in treatment: 17313341 INFO @ Tue, 16 Jun 2020 11:41:31: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:41:31: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:41:31: #1 tags after filtering in treatment: 13703525 INFO @ Tue, 16 Jun 2020 11:41:31: #1 Redundant rate of treatment: 0.21 INFO @ Tue, 16 Jun 2020 11:41:31: #1 finished! INFO @ Tue, 16 Jun 2020 11:41:31: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:41:31: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:41:31: 42000000 INFO @ Tue, 16 Jun 2020 11:41:32: #2 number of paired peaks: 439 WARNING @ Tue, 16 Jun 2020 11:41:32: Fewer paired peaks (439) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 439 pairs to build model! INFO @ Tue, 16 Jun 2020 11:41:32: start model_add_line... INFO @ Tue, 16 Jun 2020 11:41:32: start X-correlation... INFO @ Tue, 16 Jun 2020 11:41:32: end of X-cor INFO @ Tue, 16 Jun 2020 11:41:32: #2 finished! INFO @ Tue, 16 Jun 2020 11:41:32: #2 predicted fragment length is 194 bps INFO @ Tue, 16 Jun 2020 11:41:32: #2 alternative fragment length(s) may be 4,194,202 bps INFO @ Tue, 16 Jun 2020 11:41:32: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619569/SRX6619569.10_model.r WARNING @ Tue, 16 Jun 2020 11:41:32: #2 Since the d (194) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:41:32: #2 You may need to consider one of the other alternative d(s): 4,194,202 WARNING @ Tue, 16 Jun 2020 11:41:32: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:41:32: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:41:32: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:41:40: 43000000 INFO @ Tue, 16 Jun 2020 11:41:49: 44000000 INFO @ Tue, 16 Jun 2020 11:41:52: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:41:52: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:41:52: #1 total tags in treatment: 17313341 INFO @ Tue, 16 Jun 2020 11:41:52: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:41:52: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:41:52: #1 tags after filtering in treatment: 13703525 INFO @ Tue, 16 Jun 2020 11:41:52: #1 Redundant rate of treatment: 0.21 INFO @ Tue, 16 Jun 2020 11:41:52: #1 finished! INFO @ Tue, 16 Jun 2020 11:41:52: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:41:52: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:41:53: #2 number of paired peaks: 439 WARNING @ Tue, 16 Jun 2020 11:41:53: Fewer paired peaks (439) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 439 pairs to build model! INFO @ Tue, 16 Jun 2020 11:41:53: start model_add_line... INFO @ Tue, 16 Jun 2020 11:41:53: start X-correlation... INFO @ Tue, 16 Jun 2020 11:41:53: end of X-cor INFO @ Tue, 16 Jun 2020 11:41:53: #2 finished! INFO @ Tue, 16 Jun 2020 11:41:53: #2 predicted fragment length is 194 bps INFO @ Tue, 16 Jun 2020 11:41:53: #2 alternative fragment length(s) may be 4,194,202 bps INFO @ Tue, 16 Jun 2020 11:41:53: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619569/SRX6619569.20_model.r WARNING @ Tue, 16 Jun 2020 11:41:53: #2 Since the d (194) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:41:53: #2 You may need to consider one of the other alternative d(s): 4,194,202 WARNING @ Tue, 16 Jun 2020 11:41:53: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:41:53: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:41:53: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:42:04: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:42:18: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619569/SRX6619569.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:42:18: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619569/SRX6619569.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:42:18: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619569/SRX6619569.10_summits.bed INFO @ Tue, 16 Jun 2020 11:42:18: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (445 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:42:23: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:42:37: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619569/SRX6619569.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:42:37: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619569/SRX6619569.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:42:37: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619569/SRX6619569.20_summits.bed INFO @ Tue, 16 Jun 2020 11:42:37: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (283 records, 4 fields): 2 millis CompletedMACS2peakCalling