Job ID = 6368866 SRX = SRX6619564 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:39:01 prefetch.2.10.7: 1) Downloading 'SRR9866045'... 2020-06-16T00:39:01 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:56:25 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:56:25 prefetch.2.10.7: 1) 'SRR9866045' was downloaded successfully 2020-06-16T00:56:25 prefetch.2.10.7: 'SRR9866045' has 0 unresolved dependencies Read 36677495 spots for SRR9866045/SRR9866045.sra Written 36677495 spots for SRR9866045/SRR9866045.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:11:02 36677495 reads; of these: 36677495 (100.00%) were paired; of these: 16195695 (44.16%) aligned concordantly 0 times 17417422 (47.49%) aligned concordantly exactly 1 time 3064378 (8.35%) aligned concordantly >1 times ---- 16195695 pairs aligned concordantly 0 times; of these: 9762801 (60.28%) aligned discordantly 1 time ---- 6432894 pairs aligned 0 times concordantly or discordantly; of these: 12865788 mates make up the pairs; of these: 9330067 (72.52%) aligned 0 times 1761390 (13.69%) aligned exactly 1 time 1774331 (13.79%) aligned >1 times 87.28% overall alignment rate Time searching: 01:11:02 Overall time: 01:11:02 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 48 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 4900780 / 29419928 = 0.1666 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:43:55: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619564/SRX6619564.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619564/SRX6619564.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619564/SRX6619564.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619564/SRX6619564.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:43:55: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:43:55: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:44:04: 1000000 INFO @ Tue, 16 Jun 2020 11:44:13: 2000000 INFO @ Tue, 16 Jun 2020 11:44:22: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:44:25: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619564/SRX6619564.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619564/SRX6619564.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619564/SRX6619564.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619564/SRX6619564.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:44:25: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:44:25: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:44:31: 4000000 INFO @ Tue, 16 Jun 2020 11:44:34: 1000000 INFO @ Tue, 16 Jun 2020 11:44:40: 5000000 INFO @ Tue, 16 Jun 2020 11:44:43: 2000000 INFO @ Tue, 16 Jun 2020 11:44:49: 6000000 INFO @ Tue, 16 Jun 2020 11:44:51: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:44:55: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619564/SRX6619564.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619564/SRX6619564.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619564/SRX6619564.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619564/SRX6619564.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:44:55: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:44:55: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:44:58: 7000000 INFO @ Tue, 16 Jun 2020 11:45:00: 4000000 INFO @ Tue, 16 Jun 2020 11:45:04: 1000000 INFO @ Tue, 16 Jun 2020 11:45:07: 8000000 INFO @ Tue, 16 Jun 2020 11:45:09: 5000000 INFO @ Tue, 16 Jun 2020 11:45:13: 2000000 INFO @ Tue, 16 Jun 2020 11:45:17: 9000000 INFO @ Tue, 16 Jun 2020 11:45:18: 6000000 INFO @ Tue, 16 Jun 2020 11:45:22: 3000000 INFO @ Tue, 16 Jun 2020 11:45:26: 10000000 INFO @ Tue, 16 Jun 2020 11:45:27: 7000000 INFO @ Tue, 16 Jun 2020 11:45:31: 4000000 INFO @ Tue, 16 Jun 2020 11:45:36: 11000000 INFO @ Tue, 16 Jun 2020 11:45:36: 8000000 INFO @ Tue, 16 Jun 2020 11:45:40: 5000000 INFO @ Tue, 16 Jun 2020 11:45:45: 9000000 INFO @ Tue, 16 Jun 2020 11:45:45: 12000000 INFO @ Tue, 16 Jun 2020 11:45:49: 6000000 INFO @ Tue, 16 Jun 2020 11:45:53: 10000000 INFO @ Tue, 16 Jun 2020 11:45:55: 13000000 INFO @ Tue, 16 Jun 2020 11:45:58: 7000000 INFO @ Tue, 16 Jun 2020 11:46:02: 11000000 INFO @ Tue, 16 Jun 2020 11:46:04: 14000000 INFO @ Tue, 16 Jun 2020 11:46:06: 8000000 INFO @ Tue, 16 Jun 2020 11:46:11: 12000000 INFO @ Tue, 16 Jun 2020 11:46:14: 15000000 INFO @ Tue, 16 Jun 2020 11:46:15: 9000000 INFO @ Tue, 16 Jun 2020 11:46:20: 13000000 INFO @ Tue, 16 Jun 2020 11:46:24: 16000000 INFO @ Tue, 16 Jun 2020 11:46:24: 10000000 INFO @ Tue, 16 Jun 2020 11:46:29: 14000000 INFO @ Tue, 16 Jun 2020 11:46:33: 11000000 INFO @ Tue, 16 Jun 2020 11:46:34: 17000000 INFO @ Tue, 16 Jun 2020 11:46:38: 15000000 INFO @ Tue, 16 Jun 2020 11:46:42: 12000000 INFO @ Tue, 16 Jun 2020 11:46:44: 18000000 INFO @ Tue, 16 Jun 2020 11:46:47: 16000000 INFO @ Tue, 16 Jun 2020 11:46:51: 13000000 INFO @ Tue, 16 Jun 2020 11:46:53: 19000000 INFO @ Tue, 16 Jun 2020 11:46:56: 17000000 INFO @ Tue, 16 Jun 2020 11:47:00: 14000000 INFO @ Tue, 16 Jun 2020 11:47:03: 20000000 INFO @ Tue, 16 Jun 2020 11:47:05: 18000000 INFO @ Tue, 16 Jun 2020 11:47:09: 15000000 INFO @ Tue, 16 Jun 2020 11:47:13: 19000000 INFO @ Tue, 16 Jun 2020 11:47:14: 21000000 INFO @ Tue, 16 Jun 2020 11:47:18: 16000000 INFO @ Tue, 16 Jun 2020 11:47:22: 20000000 INFO @ Tue, 16 Jun 2020 11:47:24: 22000000 INFO @ Tue, 16 Jun 2020 11:47:27: 17000000 INFO @ Tue, 16 Jun 2020 11:47:31: 21000000 INFO @ Tue, 16 Jun 2020 11:47:34: 23000000 INFO @ Tue, 16 Jun 2020 11:47:37: 18000000 INFO @ Tue, 16 Jun 2020 11:47:40: 22000000 INFO @ Tue, 16 Jun 2020 11:47:43: 24000000 INFO @ Tue, 16 Jun 2020 11:47:46: 19000000 INFO @ Tue, 16 Jun 2020 11:47:50: 23000000 INFO @ Tue, 16 Jun 2020 11:47:53: 25000000 INFO @ Tue, 16 Jun 2020 11:47:55: 20000000 INFO @ Tue, 16 Jun 2020 11:47:59: 24000000 INFO @ Tue, 16 Jun 2020 11:48:03: 26000000 INFO @ Tue, 16 Jun 2020 11:48:04: 21000000 INFO @ Tue, 16 Jun 2020 11:48:08: 25000000 INFO @ Tue, 16 Jun 2020 11:48:13: 22000000 INFO @ Tue, 16 Jun 2020 11:48:13: 27000000 INFO @ Tue, 16 Jun 2020 11:48:17: 26000000 INFO @ Tue, 16 Jun 2020 11:48:22: 23000000 INFO @ Tue, 16 Jun 2020 11:48:23: 28000000 INFO @ Tue, 16 Jun 2020 11:48:25: 27000000 INFO @ Tue, 16 Jun 2020 11:48:31: 24000000 INFO @ Tue, 16 Jun 2020 11:48:33: 29000000 INFO @ Tue, 16 Jun 2020 11:48:34: 28000000 INFO @ Tue, 16 Jun 2020 11:48:40: 25000000 INFO @ Tue, 16 Jun 2020 11:48:43: 30000000 INFO @ Tue, 16 Jun 2020 11:48:43: 29000000 INFO @ Tue, 16 Jun 2020 11:48:49: 26000000 INFO @ Tue, 16 Jun 2020 11:48:52: 30000000 INFO @ Tue, 16 Jun 2020 11:48:53: 31000000 INFO @ Tue, 16 Jun 2020 11:48:58: 27000000 INFO @ Tue, 16 Jun 2020 11:49:01: 31000000 INFO @ Tue, 16 Jun 2020 11:49:02: 32000000 INFO @ Tue, 16 Jun 2020 11:49:07: 28000000 INFO @ Tue, 16 Jun 2020 11:49:10: 32000000 INFO @ Tue, 16 Jun 2020 11:49:12: 33000000 INFO @ Tue, 16 Jun 2020 11:49:15: 29000000 INFO @ Tue, 16 Jun 2020 11:49:18: 33000000 INFO @ Tue, 16 Jun 2020 11:49:22: 34000000 INFO @ Tue, 16 Jun 2020 11:49:24: 30000000 INFO @ Tue, 16 Jun 2020 11:49:27: 34000000 INFO @ Tue, 16 Jun 2020 11:49:31: 35000000 INFO @ Tue, 16 Jun 2020 11:49:33: 31000000 INFO @ Tue, 16 Jun 2020 11:49:36: 35000000 INFO @ Tue, 16 Jun 2020 11:49:41: 36000000 INFO @ Tue, 16 Jun 2020 11:49:42: 32000000 INFO @ Tue, 16 Jun 2020 11:49:45: 36000000 INFO @ Tue, 16 Jun 2020 11:49:50: 37000000 INFO @ Tue, 16 Jun 2020 11:49:51: 33000000 INFO @ Tue, 16 Jun 2020 11:49:53: 37000000 INFO @ Tue, 16 Jun 2020 11:50:00: 34000000 INFO @ Tue, 16 Jun 2020 11:50:00: 38000000 INFO @ Tue, 16 Jun 2020 11:50:02: 38000000 INFO @ Tue, 16 Jun 2020 11:50:08: 35000000 INFO @ Tue, 16 Jun 2020 11:50:10: 39000000 INFO @ Tue, 16 Jun 2020 11:50:11: 39000000 INFO @ Tue, 16 Jun 2020 11:50:17: 36000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:50:20: 40000000 INFO @ Tue, 16 Jun 2020 11:50:21: 40000000 INFO @ Tue, 16 Jun 2020 11:50:26: 37000000 INFO @ Tue, 16 Jun 2020 11:50:30: 41000000 INFO @ Tue, 16 Jun 2020 11:50:30: 41000000 INFO @ Tue, 16 Jun 2020 11:50:35: 38000000 INFO @ Tue, 16 Jun 2020 11:50:40: 42000000 INFO @ Tue, 16 Jun 2020 11:50:40: 42000000 INFO @ Tue, 16 Jun 2020 11:50:44: 39000000 INFO @ Tue, 16 Jun 2020 11:50:50: 43000000 INFO @ Tue, 16 Jun 2020 11:50:50: 43000000 INFO @ Tue, 16 Jun 2020 11:50:53: 40000000 INFO @ Tue, 16 Jun 2020 11:51:00: 44000000 INFO @ Tue, 16 Jun 2020 11:51:00: 44000000 INFO @ Tue, 16 Jun 2020 11:51:01: 41000000 INFO @ Tue, 16 Jun 2020 11:51:10: 45000000 INFO @ Tue, 16 Jun 2020 11:51:10: 42000000 INFO @ Tue, 16 Jun 2020 11:51:10: 45000000 INFO @ Tue, 16 Jun 2020 11:51:19: 43000000 INFO @ Tue, 16 Jun 2020 11:51:20: 46000000 INFO @ Tue, 16 Jun 2020 11:51:21: 46000000 INFO @ Tue, 16 Jun 2020 11:51:28: 44000000 INFO @ Tue, 16 Jun 2020 11:51:30: 47000000 INFO @ Tue, 16 Jun 2020 11:51:31: 47000000 INFO @ Tue, 16 Jun 2020 11:51:37: 45000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:51:41: 48000000 INFO @ Tue, 16 Jun 2020 11:51:41: 48000000 INFO @ Tue, 16 Jun 2020 11:51:46: 46000000 INFO @ Tue, 16 Jun 2020 11:51:51: 49000000 INFO @ Tue, 16 Jun 2020 11:51:51: 49000000 INFO @ Tue, 16 Jun 2020 11:51:55: 47000000 INFO @ Tue, 16 Jun 2020 11:52:02: 50000000 INFO @ Tue, 16 Jun 2020 11:52:02: 50000000 INFO @ Tue, 16 Jun 2020 11:52:04: 48000000 INFO @ Tue, 16 Jun 2020 11:52:12: 51000000 INFO @ Tue, 16 Jun 2020 11:52:13: 51000000 INFO @ Tue, 16 Jun 2020 11:52:13: 49000000 INFO @ Tue, 16 Jun 2020 11:52:22: 50000000 INFO @ Tue, 16 Jun 2020 11:52:24: 52000000 INFO @ Tue, 16 Jun 2020 11:52:24: 52000000 INFO @ Tue, 16 Jun 2020 11:52:31: 51000000 INFO @ Tue, 16 Jun 2020 11:52:35: 53000000 INFO @ Tue, 16 Jun 2020 11:52:35: 53000000 INFO @ Tue, 16 Jun 2020 11:52:40: 52000000 INFO @ Tue, 16 Jun 2020 11:52:44: 54000000 INFO @ Tue, 16 Jun 2020 11:52:45: 54000000 INFO @ Tue, 16 Jun 2020 11:52:47: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:52:47: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:52:47: #1 total tags in treatment: 16953710 INFO @ Tue, 16 Jun 2020 11:52:47: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:52:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:52:47: #1 tags after filtering in treatment: 14469260 INFO @ Tue, 16 Jun 2020 11:52:47: #1 Redundant rate of treatment: 0.15 INFO @ Tue, 16 Jun 2020 11:52:47: #1 finished! INFO @ Tue, 16 Jun 2020 11:52:47: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:52:47: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:52:47: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:52:47: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:52:47: #1 total tags in treatment: 16953710 INFO @ Tue, 16 Jun 2020 11:52:47: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:52:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:52:48: #1 tags after filtering in treatment: 14469260 INFO @ Tue, 16 Jun 2020 11:52:48: #1 Redundant rate of treatment: 0.15 INFO @ Tue, 16 Jun 2020 11:52:48: #1 finished! INFO @ Tue, 16 Jun 2020 11:52:48: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:52:48: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:52:48: #2 number of paired peaks: 237 WARNING @ Tue, 16 Jun 2020 11:52:48: Fewer paired peaks (237) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 237 pairs to build model! INFO @ Tue, 16 Jun 2020 11:52:48: start model_add_line... INFO @ Tue, 16 Jun 2020 11:52:48: start X-correlation... INFO @ Tue, 16 Jun 2020 11:52:48: end of X-cor INFO @ Tue, 16 Jun 2020 11:52:48: #2 finished! INFO @ Tue, 16 Jun 2020 11:52:48: #2 predicted fragment length is 204 bps INFO @ Tue, 16 Jun 2020 11:52:48: #2 alternative fragment length(s) may be 4,204 bps INFO @ Tue, 16 Jun 2020 11:52:48: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619564/SRX6619564.05_model.r WARNING @ Tue, 16 Jun 2020 11:52:48: #2 Since the d (204) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:52:48: #2 You may need to consider one of the other alternative d(s): 4,204 WARNING @ Tue, 16 Jun 2020 11:52:48: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:52:48: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:52:48: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:52:49: #2 number of paired peaks: 237 WARNING @ Tue, 16 Jun 2020 11:52:49: Fewer paired peaks (237) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 237 pairs to build model! INFO @ Tue, 16 Jun 2020 11:52:49: start model_add_line... INFO @ Tue, 16 Jun 2020 11:52:49: start X-correlation... INFO @ Tue, 16 Jun 2020 11:52:49: end of X-cor INFO @ Tue, 16 Jun 2020 11:52:49: #2 finished! INFO @ Tue, 16 Jun 2020 11:52:49: #2 predicted fragment length is 204 bps INFO @ Tue, 16 Jun 2020 11:52:49: #2 alternative fragment length(s) may be 4,204 bps INFO @ Tue, 16 Jun 2020 11:52:49: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619564/SRX6619564.10_model.r WARNING @ Tue, 16 Jun 2020 11:52:49: #2 Since the d (204) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:52:49: #2 You may need to consider one of the other alternative d(s): 4,204 WARNING @ Tue, 16 Jun 2020 11:52:49: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:52:49: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:52:49: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:52:49: 53000000 INFO @ Tue, 16 Jun 2020 11:52:58: 54000000 INFO @ Tue, 16 Jun 2020 11:53:00: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:53:00: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:53:00: #1 total tags in treatment: 16953710 INFO @ Tue, 16 Jun 2020 11:53:00: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:53:00: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:53:01: #1 tags after filtering in treatment: 14469260 INFO @ Tue, 16 Jun 2020 11:53:01: #1 Redundant rate of treatment: 0.15 INFO @ Tue, 16 Jun 2020 11:53:01: #1 finished! INFO @ Tue, 16 Jun 2020 11:53:01: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:53:01: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:53:02: #2 number of paired peaks: 237 WARNING @ Tue, 16 Jun 2020 11:53:02: Fewer paired peaks (237) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 237 pairs to build model! INFO @ Tue, 16 Jun 2020 11:53:02: start model_add_line... INFO @ Tue, 16 Jun 2020 11:53:02: start X-correlation... INFO @ Tue, 16 Jun 2020 11:53:02: end of X-cor INFO @ Tue, 16 Jun 2020 11:53:02: #2 finished! INFO @ Tue, 16 Jun 2020 11:53:02: #2 predicted fragment length is 204 bps INFO @ Tue, 16 Jun 2020 11:53:02: #2 alternative fragment length(s) may be 4,204 bps INFO @ Tue, 16 Jun 2020 11:53:02: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619564/SRX6619564.20_model.r WARNING @ Tue, 16 Jun 2020 11:53:02: #2 Since the d (204) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:53:02: #2 You may need to consider one of the other alternative d(s): 4,204 WARNING @ Tue, 16 Jun 2020 11:53:02: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:53:02: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:53:02: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:53:18: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:53:20: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:53:32: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619564/SRX6619564.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:53:32: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619564/SRX6619564.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:53:32: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619564/SRX6619564.05_summits.bed INFO @ Tue, 16 Jun 2020 11:53:32: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (436 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:53:34: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:53:35: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619564/SRX6619564.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:53:35: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619564/SRX6619564.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:53:35: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619564/SRX6619564.10_summits.bed INFO @ Tue, 16 Jun 2020 11:53:35: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (326 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:53:49: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619564/SRX6619564.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:53:49: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619564/SRX6619564.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:53:49: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619564/SRX6619564.20_summits.bed INFO @ Tue, 16 Jun 2020 11:53:49: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (226 records, 4 fields): 1 millis CompletedMACS2peakCalling