Job ID = 6368865 SRX = SRX6619563 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:33:43 prefetch.2.10.7: 1) Downloading 'SRR9866046'... 2020-06-16T00:33:43 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:51:08 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:51:08 prefetch.2.10.7: 1) 'SRR9866046' was downloaded successfully 2020-06-16T00:51:08 prefetch.2.10.7: 'SRR9866046' has 0 unresolved dependencies Read 29470958 spots for SRR9866046/SRR9866046.sra Written 29470958 spots for SRR9866046/SRR9866046.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:08:48 29470958 reads; of these: 29470958 (100.00%) were paired; of these: 12524223 (42.50%) aligned concordantly 0 times 12675577 (43.01%) aligned concordantly exactly 1 time 4271158 (14.49%) aligned concordantly >1 times ---- 12524223 pairs aligned concordantly 0 times; of these: 4848178 (38.71%) aligned discordantly 1 time ---- 7676045 pairs aligned 0 times concordantly or discordantly; of these: 15352090 mates make up the pairs; of these: 13087006 (85.25%) aligned 0 times 740995 (4.83%) aligned exactly 1 time 1524089 (9.93%) aligned >1 times 77.80% overall alignment rate Time searching: 01:08:49 Overall time: 01:08:49 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 2764978 / 21441887 = 0.1290 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:30:07: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619563/SRX6619563.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619563/SRX6619563.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619563/SRX6619563.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619563/SRX6619563.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:30:07: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:30:07: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:30:19: 1000000 INFO @ Tue, 16 Jun 2020 11:30:30: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:30:37: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619563/SRX6619563.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619563/SRX6619563.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619563/SRX6619563.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619563/SRX6619563.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:30:37: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:30:37: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:30:42: 3000000 INFO @ Tue, 16 Jun 2020 11:30:49: 1000000 INFO @ Tue, 16 Jun 2020 11:30:56: 4000000 INFO @ Tue, 16 Jun 2020 11:31:00: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:31:07: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619563/SRX6619563.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619563/SRX6619563.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619563/SRX6619563.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619563/SRX6619563.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:31:07: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:31:07: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:31:09: 5000000 INFO @ Tue, 16 Jun 2020 11:31:12: 3000000 INFO @ Tue, 16 Jun 2020 11:31:19: 1000000 INFO @ Tue, 16 Jun 2020 11:31:22: 6000000 INFO @ Tue, 16 Jun 2020 11:31:24: 4000000 INFO @ Tue, 16 Jun 2020 11:31:31: 2000000 INFO @ Tue, 16 Jun 2020 11:31:36: 7000000 INFO @ Tue, 16 Jun 2020 11:31:36: 5000000 INFO @ Tue, 16 Jun 2020 11:31:43: 3000000 INFO @ Tue, 16 Jun 2020 11:31:48: 6000000 INFO @ Tue, 16 Jun 2020 11:31:49: 8000000 INFO @ Tue, 16 Jun 2020 11:31:55: 4000000 INFO @ Tue, 16 Jun 2020 11:32:00: 7000000 INFO @ Tue, 16 Jun 2020 11:32:02: 9000000 INFO @ Tue, 16 Jun 2020 11:32:08: 5000000 INFO @ Tue, 16 Jun 2020 11:32:12: 8000000 INFO @ Tue, 16 Jun 2020 11:32:15: 10000000 INFO @ Tue, 16 Jun 2020 11:32:20: 6000000 INFO @ Tue, 16 Jun 2020 11:32:24: 9000000 INFO @ Tue, 16 Jun 2020 11:32:29: 11000000 INFO @ Tue, 16 Jun 2020 11:32:32: 7000000 INFO @ Tue, 16 Jun 2020 11:32:36: 10000000 INFO @ Tue, 16 Jun 2020 11:32:42: 12000000 INFO @ Tue, 16 Jun 2020 11:32:45: 8000000 INFO @ Tue, 16 Jun 2020 11:32:49: 11000000 INFO @ Tue, 16 Jun 2020 11:32:56: 13000000 INFO @ Tue, 16 Jun 2020 11:32:57: 9000000 INFO @ Tue, 16 Jun 2020 11:33:02: 12000000 INFO @ Tue, 16 Jun 2020 11:33:10: 14000000 INFO @ Tue, 16 Jun 2020 11:33:10: 10000000 INFO @ Tue, 16 Jun 2020 11:33:14: 13000000 INFO @ Tue, 16 Jun 2020 11:33:23: 11000000 INFO @ Tue, 16 Jun 2020 11:33:23: 15000000 INFO @ Tue, 16 Jun 2020 11:33:27: 14000000 INFO @ Tue, 16 Jun 2020 11:33:36: 12000000 INFO @ Tue, 16 Jun 2020 11:33:37: 16000000 INFO @ Tue, 16 Jun 2020 11:33:41: 15000000 INFO @ Tue, 16 Jun 2020 11:33:49: 13000000 INFO @ Tue, 16 Jun 2020 11:33:51: 17000000 INFO @ Tue, 16 Jun 2020 11:33:54: 16000000 INFO @ Tue, 16 Jun 2020 11:34:03: 14000000 INFO @ Tue, 16 Jun 2020 11:34:04: 18000000 INFO @ Tue, 16 Jun 2020 11:34:07: 17000000 INFO @ Tue, 16 Jun 2020 11:34:16: 15000000 INFO @ Tue, 16 Jun 2020 11:34:18: 19000000 INFO @ Tue, 16 Jun 2020 11:34:21: 18000000 INFO @ Tue, 16 Jun 2020 11:34:30: 16000000 INFO @ Tue, 16 Jun 2020 11:34:31: 20000000 INFO @ Tue, 16 Jun 2020 11:34:34: 19000000 INFO @ Tue, 16 Jun 2020 11:34:43: 17000000 INFO @ Tue, 16 Jun 2020 11:34:45: 21000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:34:47: 20000000 INFO @ Tue, 16 Jun 2020 11:34:56: 18000000 INFO @ Tue, 16 Jun 2020 11:34:59: 22000000 INFO @ Tue, 16 Jun 2020 11:35:00: 21000000 INFO @ Tue, 16 Jun 2020 11:35:09: 19000000 INFO @ Tue, 16 Jun 2020 11:35:13: 22000000 INFO @ Tue, 16 Jun 2020 11:35:13: 23000000 INFO @ Tue, 16 Jun 2020 11:35:22: 20000000 INFO @ Tue, 16 Jun 2020 11:35:26: 23000000 INFO @ Tue, 16 Jun 2020 11:35:26: 24000000 INFO @ Tue, 16 Jun 2020 11:35:34: 21000000 INFO @ Tue, 16 Jun 2020 11:35:38: 24000000 INFO @ Tue, 16 Jun 2020 11:35:40: 25000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:35:47: 22000000 INFO @ Tue, 16 Jun 2020 11:35:51: 25000000 INFO @ Tue, 16 Jun 2020 11:35:53: 26000000 INFO @ Tue, 16 Jun 2020 11:35:59: 23000000 INFO @ Tue, 16 Jun 2020 11:36:03: 26000000 INFO @ Tue, 16 Jun 2020 11:36:06: 27000000 INFO @ Tue, 16 Jun 2020 11:36:12: 24000000 INFO @ Tue, 16 Jun 2020 11:36:16: 27000000 INFO @ Tue, 16 Jun 2020 11:36:19: 28000000 INFO @ Tue, 16 Jun 2020 11:36:25: 25000000 INFO @ Tue, 16 Jun 2020 11:36:29: 28000000 INFO @ Tue, 16 Jun 2020 11:36:32: 29000000 INFO @ Tue, 16 Jun 2020 11:36:37: 26000000 INFO @ Tue, 16 Jun 2020 11:36:41: 29000000 INFO @ Tue, 16 Jun 2020 11:36:45: 30000000 INFO @ Tue, 16 Jun 2020 11:36:50: 27000000 INFO @ Tue, 16 Jun 2020 11:36:54: 30000000 INFO @ Tue, 16 Jun 2020 11:36:58: 31000000 INFO @ Tue, 16 Jun 2020 11:37:02: 28000000 INFO @ Tue, 16 Jun 2020 11:37:06: 31000000 INFO @ Tue, 16 Jun 2020 11:37:11: 32000000 INFO @ Tue, 16 Jun 2020 11:37:15: 29000000 INFO @ Tue, 16 Jun 2020 11:37:19: 32000000 INFO @ Tue, 16 Jun 2020 11:37:24: 33000000 INFO @ Tue, 16 Jun 2020 11:37:27: 30000000 INFO @ Tue, 16 Jun 2020 11:37:31: 33000000 INFO @ Tue, 16 Jun 2020 11:37:37: 34000000 INFO @ Tue, 16 Jun 2020 11:37:39: 31000000 INFO @ Tue, 16 Jun 2020 11:37:43: 34000000 INFO @ Tue, 16 Jun 2020 11:37:50: 35000000 INFO @ Tue, 16 Jun 2020 11:37:52: 32000000 INFO @ Tue, 16 Jun 2020 11:37:56: 35000000 INFO @ Tue, 16 Jun 2020 11:38:03: 36000000 INFO @ Tue, 16 Jun 2020 11:38:04: 33000000 INFO @ Tue, 16 Jun 2020 11:38:08: 36000000 INFO @ Tue, 16 Jun 2020 11:38:16: 37000000 INFO @ Tue, 16 Jun 2020 11:38:16: 34000000 INFO @ Tue, 16 Jun 2020 11:38:20: 37000000 INFO @ Tue, 16 Jun 2020 11:38:28: 35000000 INFO @ Tue, 16 Jun 2020 11:38:29: 38000000 INFO @ Tue, 16 Jun 2020 11:38:33: 38000000 INFO @ Tue, 16 Jun 2020 11:38:41: 36000000 INFO @ Tue, 16 Jun 2020 11:38:41: 39000000 INFO @ Tue, 16 Jun 2020 11:38:45: 39000000 INFO @ Tue, 16 Jun 2020 11:38:53: 37000000 INFO @ Tue, 16 Jun 2020 11:38:55: 40000000 INFO @ Tue, 16 Jun 2020 11:38:58: 40000000 INFO @ Tue, 16 Jun 2020 11:38:59: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:38:59: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:38:59: #1 total tags in treatment: 14602377 INFO @ Tue, 16 Jun 2020 11:38:59: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:38:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:38:59: #1 tags after filtering in treatment: 11701894 INFO @ Tue, 16 Jun 2020 11:38:59: #1 Redundant rate of treatment: 0.20 INFO @ Tue, 16 Jun 2020 11:38:59: #1 finished! INFO @ Tue, 16 Jun 2020 11:38:59: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:38:59: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:39:00: #2 number of paired peaks: 443 WARNING @ Tue, 16 Jun 2020 11:39:00: Fewer paired peaks (443) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 443 pairs to build model! INFO @ Tue, 16 Jun 2020 11:39:00: start model_add_line... INFO @ Tue, 16 Jun 2020 11:39:00: start X-correlation... INFO @ Tue, 16 Jun 2020 11:39:00: end of X-cor INFO @ Tue, 16 Jun 2020 11:39:00: #2 finished! INFO @ Tue, 16 Jun 2020 11:39:00: #2 predicted fragment length is 207 bps INFO @ Tue, 16 Jun 2020 11:39:00: #2 alternative fragment length(s) may be 207 bps INFO @ Tue, 16 Jun 2020 11:39:00: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619563/SRX6619563.05_model.r WARNING @ Tue, 16 Jun 2020 11:39:00: #2 Since the d (207) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:39:00: #2 You may need to consider one of the other alternative d(s): 207 WARNING @ Tue, 16 Jun 2020 11:39:00: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:39:00: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:39:00: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:39:02: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:39:02: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:39:02: #1 total tags in treatment: 14602377 INFO @ Tue, 16 Jun 2020 11:39:02: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:39:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:39:02: #1 tags after filtering in treatment: 11701894 INFO @ Tue, 16 Jun 2020 11:39:02: #1 Redundant rate of treatment: 0.20 INFO @ Tue, 16 Jun 2020 11:39:02: #1 finished! INFO @ Tue, 16 Jun 2020 11:39:02: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:39:02: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:39:03: #2 number of paired peaks: 443 WARNING @ Tue, 16 Jun 2020 11:39:03: Fewer paired peaks (443) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 443 pairs to build model! INFO @ Tue, 16 Jun 2020 11:39:03: start model_add_line... INFO @ Tue, 16 Jun 2020 11:39:03: start X-correlation... INFO @ Tue, 16 Jun 2020 11:39:03: end of X-cor INFO @ Tue, 16 Jun 2020 11:39:03: #2 finished! INFO @ Tue, 16 Jun 2020 11:39:03: #2 predicted fragment length is 207 bps INFO @ Tue, 16 Jun 2020 11:39:03: #2 alternative fragment length(s) may be 207 bps INFO @ Tue, 16 Jun 2020 11:39:03: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619563/SRX6619563.10_model.r WARNING @ Tue, 16 Jun 2020 11:39:03: #2 Since the d (207) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:39:03: #2 You may need to consider one of the other alternative d(s): 207 WARNING @ Tue, 16 Jun 2020 11:39:03: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:39:03: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:39:03: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:39:04: 38000000 INFO @ Tue, 16 Jun 2020 11:39:15: 39000000 INFO @ Tue, 16 Jun 2020 11:39:24: 40000000 INFO @ Tue, 16 Jun 2020 11:39:25: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:39:28: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:39:28: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:39:28: #1 total tags in treatment: 14602377 INFO @ Tue, 16 Jun 2020 11:39:28: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:39:28: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:39:28: #1 tags after filtering in treatment: 11701894 INFO @ Tue, 16 Jun 2020 11:39:28: #1 Redundant rate of treatment: 0.20 INFO @ Tue, 16 Jun 2020 11:39:28: #1 finished! INFO @ Tue, 16 Jun 2020 11:39:28: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:39:28: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:39:28: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:39:29: #2 number of paired peaks: 443 WARNING @ Tue, 16 Jun 2020 11:39:29: Fewer paired peaks (443) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 443 pairs to build model! INFO @ Tue, 16 Jun 2020 11:39:29: start model_add_line... INFO @ Tue, 16 Jun 2020 11:39:29: start X-correlation... INFO @ Tue, 16 Jun 2020 11:39:29: end of X-cor INFO @ Tue, 16 Jun 2020 11:39:29: #2 finished! INFO @ Tue, 16 Jun 2020 11:39:29: #2 predicted fragment length is 207 bps INFO @ Tue, 16 Jun 2020 11:39:29: #2 alternative fragment length(s) may be 207 bps INFO @ Tue, 16 Jun 2020 11:39:29: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619563/SRX6619563.20_model.r WARNING @ Tue, 16 Jun 2020 11:39:29: #2 Since the d (207) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:39:29: #2 You may need to consider one of the other alternative d(s): 207 WARNING @ Tue, 16 Jun 2020 11:39:29: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:39:29: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:39:29: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:39:37: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619563/SRX6619563.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:39:37: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619563/SRX6619563.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:39:37: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619563/SRX6619563.05_summits.bed INFO @ Tue, 16 Jun 2020 11:39:37: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (702 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:39:41: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619563/SRX6619563.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:39:41: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619563/SRX6619563.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:39:41: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619563/SRX6619563.10_summits.bed INFO @ Tue, 16 Jun 2020 11:39:41: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (437 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:39:55: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:40:08: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619563/SRX6619563.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:40:08: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619563/SRX6619563.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:40:08: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619563/SRX6619563.20_summits.bed INFO @ Tue, 16 Jun 2020 11:40:08: Done! pass1 - making usageList (6 chroms): 2 millis pass2 - checking and writing primary data (285 records, 4 fields): 1 millis CompletedMACS2peakCalling