Job ID = 6368863 SRX = SRX6619561 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:38:19 prefetch.2.10.7: 1) Downloading 'SRR9866048'... 2020-06-16T00:38:19 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:56:01 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:56:01 prefetch.2.10.7: 1) 'SRR9866048' was downloaded successfully 2020-06-16T00:56:01 prefetch.2.10.7: 'SRR9866048' has 0 unresolved dependencies Read 34837042 spots for SRR9866048/SRR9866048.sra Written 34837042 spots for SRR9866048/SRR9866048.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:20:21 34837042 reads; of these: 34837042 (100.00%) were paired; of these: 20236429 (58.09%) aligned concordantly 0 times 10651769 (30.58%) aligned concordantly exactly 1 time 3948844 (11.34%) aligned concordantly >1 times ---- 20236429 pairs aligned concordantly 0 times; of these: 7360833 (36.37%) aligned discordantly 1 time ---- 12875596 pairs aligned 0 times concordantly or discordantly; of these: 25751192 mates make up the pairs; of these: 22216918 (86.28%) aligned 0 times 1279859 (4.97%) aligned exactly 1 time 2254415 (8.75%) aligned >1 times 68.11% overall alignment rate Time searching: 01:20:21 Overall time: 01:20:21 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 3262963 / 21648599 = 0.1507 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:45:15: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619561/SRX6619561.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619561/SRX6619561.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619561/SRX6619561.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619561/SRX6619561.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:45:15: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:45:15: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:45:24: 1000000 INFO @ Tue, 16 Jun 2020 11:45:34: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:45:43: 3000000 INFO @ Tue, 16 Jun 2020 11:45:44: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619561/SRX6619561.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619561/SRX6619561.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619561/SRX6619561.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619561/SRX6619561.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:45:44: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:45:44: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:45:54: 4000000 INFO @ Tue, 16 Jun 2020 11:45:55: 1000000 INFO @ Tue, 16 Jun 2020 11:46:04: 5000000 INFO @ Tue, 16 Jun 2020 11:46:05: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:46:15: 6000000 INFO @ Tue, 16 Jun 2020 11:46:15: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619561/SRX6619561.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619561/SRX6619561.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619561/SRX6619561.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619561/SRX6619561.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:46:15: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:46:15: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:46:15: 3000000 INFO @ Tue, 16 Jun 2020 11:46:25: 4000000 INFO @ Tue, 16 Jun 2020 11:46:25: 7000000 INFO @ Tue, 16 Jun 2020 11:46:27: 1000000 INFO @ Tue, 16 Jun 2020 11:46:36: 5000000 INFO @ Tue, 16 Jun 2020 11:46:36: 8000000 INFO @ Tue, 16 Jun 2020 11:46:39: 2000000 INFO @ Tue, 16 Jun 2020 11:46:46: 6000000 INFO @ Tue, 16 Jun 2020 11:46:48: 9000000 INFO @ Tue, 16 Jun 2020 11:46:52: 3000000 INFO @ Tue, 16 Jun 2020 11:46:56: 7000000 INFO @ Tue, 16 Jun 2020 11:47:00: 10000000 INFO @ Tue, 16 Jun 2020 11:47:04: 4000000 INFO @ Tue, 16 Jun 2020 11:47:07: 8000000 INFO @ Tue, 16 Jun 2020 11:47:12: 11000000 INFO @ Tue, 16 Jun 2020 11:47:16: 5000000 INFO @ Tue, 16 Jun 2020 11:47:18: 9000000 INFO @ Tue, 16 Jun 2020 11:47:24: 12000000 INFO @ Tue, 16 Jun 2020 11:47:28: 6000000 INFO @ Tue, 16 Jun 2020 11:47:30: 10000000 INFO @ Tue, 16 Jun 2020 11:47:37: 13000000 INFO @ Tue, 16 Jun 2020 11:47:40: 7000000 INFO @ Tue, 16 Jun 2020 11:47:42: 11000000 INFO @ Tue, 16 Jun 2020 11:47:49: 14000000 INFO @ Tue, 16 Jun 2020 11:47:52: 8000000 INFO @ Tue, 16 Jun 2020 11:47:53: 12000000 INFO @ Tue, 16 Jun 2020 11:48:01: 15000000 INFO @ Tue, 16 Jun 2020 11:48:03: 9000000 INFO @ Tue, 16 Jun 2020 11:48:05: 13000000 INFO @ Tue, 16 Jun 2020 11:48:13: 16000000 INFO @ Tue, 16 Jun 2020 11:48:14: 10000000 INFO @ Tue, 16 Jun 2020 11:48:17: 14000000 INFO @ Tue, 16 Jun 2020 11:48:25: 11000000 INFO @ Tue, 16 Jun 2020 11:48:25: 17000000 INFO @ Tue, 16 Jun 2020 11:48:29: 15000000 INFO @ Tue, 16 Jun 2020 11:48:36: 12000000 INFO @ Tue, 16 Jun 2020 11:48:37: 18000000 INFO @ Tue, 16 Jun 2020 11:48:40: 16000000 INFO @ Tue, 16 Jun 2020 11:48:46: 13000000 INFO @ Tue, 16 Jun 2020 11:48:50: 19000000 INFO @ Tue, 16 Jun 2020 11:48:52: 17000000 INFO @ Tue, 16 Jun 2020 11:48:57: 14000000 INFO @ Tue, 16 Jun 2020 11:49:02: 20000000 INFO @ Tue, 16 Jun 2020 11:49:03: 18000000 INFO @ Tue, 16 Jun 2020 11:49:08: 15000000 INFO @ Tue, 16 Jun 2020 11:49:14: 21000000 INFO @ Tue, 16 Jun 2020 11:49:15: 19000000 INFO @ Tue, 16 Jun 2020 11:49:19: 16000000 INFO @ Tue, 16 Jun 2020 11:49:26: 22000000 INFO @ Tue, 16 Jun 2020 11:49:26: 20000000 INFO @ Tue, 16 Jun 2020 11:49:30: 17000000 INFO @ Tue, 16 Jun 2020 11:49:38: 21000000 INFO @ Tue, 16 Jun 2020 11:49:38: 23000000 INFO @ Tue, 16 Jun 2020 11:49:40: 18000000 INFO @ Tue, 16 Jun 2020 11:49:50: 22000000 INFO @ Tue, 16 Jun 2020 11:49:51: 24000000 INFO @ Tue, 16 Jun 2020 11:49:51: 19000000 INFO @ Tue, 16 Jun 2020 11:50:01: 23000000 INFO @ Tue, 16 Jun 2020 11:50:02: 20000000 INFO @ Tue, 16 Jun 2020 11:50:03: 25000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:50:13: 21000000 INFO @ Tue, 16 Jun 2020 11:50:13: 24000000 INFO @ Tue, 16 Jun 2020 11:50:15: 26000000 INFO @ Tue, 16 Jun 2020 11:50:24: 22000000 INFO @ Tue, 16 Jun 2020 11:50:25: 25000000 INFO @ Tue, 16 Jun 2020 11:50:27: 27000000 INFO @ Tue, 16 Jun 2020 11:50:35: 23000000 INFO @ Tue, 16 Jun 2020 11:50:36: 26000000 INFO @ Tue, 16 Jun 2020 11:50:40: 28000000 INFO @ Tue, 16 Jun 2020 11:50:46: 24000000 INFO @ Tue, 16 Jun 2020 11:50:48: 27000000 INFO @ Tue, 16 Jun 2020 11:50:52: 29000000 INFO @ Tue, 16 Jun 2020 11:50:57: 25000000 INFO @ Tue, 16 Jun 2020 11:51:00: 28000000 INFO @ Tue, 16 Jun 2020 11:51:05: 30000000 INFO @ Tue, 16 Jun 2020 11:51:08: 26000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:51:12: 29000000 INFO @ Tue, 16 Jun 2020 11:51:17: 31000000 INFO @ Tue, 16 Jun 2020 11:51:19: 27000000 INFO @ Tue, 16 Jun 2020 11:51:24: 30000000 INFO @ Tue, 16 Jun 2020 11:51:29: 32000000 INFO @ Tue, 16 Jun 2020 11:51:30: 28000000 INFO @ Tue, 16 Jun 2020 11:51:35: 31000000 INFO @ Tue, 16 Jun 2020 11:51:41: 29000000 INFO @ Tue, 16 Jun 2020 11:51:41: 33000000 INFO @ Tue, 16 Jun 2020 11:51:47: 32000000 INFO @ Tue, 16 Jun 2020 11:51:52: 30000000 INFO @ Tue, 16 Jun 2020 11:51:54: 34000000 INFO @ Tue, 16 Jun 2020 11:51:59: 33000000 INFO @ Tue, 16 Jun 2020 11:52:03: 31000000 INFO @ Tue, 16 Jun 2020 11:52:07: 35000000 INFO @ Tue, 16 Jun 2020 11:52:11: 34000000 INFO @ Tue, 16 Jun 2020 11:52:14: 32000000 INFO @ Tue, 16 Jun 2020 11:52:19: 36000000 INFO @ Tue, 16 Jun 2020 11:52:23: 35000000 INFO @ Tue, 16 Jun 2020 11:52:26: 33000000 INFO @ Tue, 16 Jun 2020 11:52:32: 37000000 INFO @ Tue, 16 Jun 2020 11:52:36: 36000000 INFO @ Tue, 16 Jun 2020 11:52:37: 34000000 INFO @ Tue, 16 Jun 2020 11:52:45: 38000000 INFO @ Tue, 16 Jun 2020 11:52:48: 35000000 INFO @ Tue, 16 Jun 2020 11:52:49: 37000000 INFO @ Tue, 16 Jun 2020 11:52:57: 39000000 INFO @ Tue, 16 Jun 2020 11:53:00: 36000000 INFO @ Tue, 16 Jun 2020 11:53:01: 38000000 INFO @ Tue, 16 Jun 2020 11:53:09: 40000000 INFO @ Tue, 16 Jun 2020 11:53:11: 37000000 INFO @ Tue, 16 Jun 2020 11:53:14: 39000000 INFO @ Tue, 16 Jun 2020 11:53:20: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:53:20: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:53:20: #1 total tags in treatment: 12102724 INFO @ Tue, 16 Jun 2020 11:53:20: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:53:20: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:53:20: #1 tags after filtering in treatment: 9431057 INFO @ Tue, 16 Jun 2020 11:53:20: #1 Redundant rate of treatment: 0.22 INFO @ Tue, 16 Jun 2020 11:53:20: #1 finished! INFO @ Tue, 16 Jun 2020 11:53:20: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:53:20: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:53:21: #2 number of paired peaks: 547 WARNING @ Tue, 16 Jun 2020 11:53:21: Fewer paired peaks (547) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 547 pairs to build model! INFO @ Tue, 16 Jun 2020 11:53:21: start model_add_line... INFO @ Tue, 16 Jun 2020 11:53:21: start X-correlation... INFO @ Tue, 16 Jun 2020 11:53:21: end of X-cor INFO @ Tue, 16 Jun 2020 11:53:21: #2 finished! INFO @ Tue, 16 Jun 2020 11:53:21: #2 predicted fragment length is 220 bps INFO @ Tue, 16 Jun 2020 11:53:21: #2 alternative fragment length(s) may be 220 bps INFO @ Tue, 16 Jun 2020 11:53:21: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619561/SRX6619561.05_model.r WARNING @ Tue, 16 Jun 2020 11:53:21: #2 Since the d (220) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:53:21: #2 You may need to consider one of the other alternative d(s): 220 WARNING @ Tue, 16 Jun 2020 11:53:21: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:53:21: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:53:21: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:53:22: 38000000 INFO @ Tue, 16 Jun 2020 11:53:25: 40000000 INFO @ Tue, 16 Jun 2020 11:53:32: 39000000 INFO @ Tue, 16 Jun 2020 11:53:36: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:53:36: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:53:36: #1 total tags in treatment: 12102724 INFO @ Tue, 16 Jun 2020 11:53:36: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:53:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:53:37: #1 tags after filtering in treatment: 9431057 INFO @ Tue, 16 Jun 2020 11:53:37: #1 Redundant rate of treatment: 0.22 INFO @ Tue, 16 Jun 2020 11:53:37: #1 finished! INFO @ Tue, 16 Jun 2020 11:53:37: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:53:37: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:53:37: #2 number of paired peaks: 547 WARNING @ Tue, 16 Jun 2020 11:53:37: Fewer paired peaks (547) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 547 pairs to build model! INFO @ Tue, 16 Jun 2020 11:53:37: start model_add_line... INFO @ Tue, 16 Jun 2020 11:53:37: start X-correlation... INFO @ Tue, 16 Jun 2020 11:53:37: end of X-cor INFO @ Tue, 16 Jun 2020 11:53:37: #2 finished! INFO @ Tue, 16 Jun 2020 11:53:37: #2 predicted fragment length is 220 bps INFO @ Tue, 16 Jun 2020 11:53:37: #2 alternative fragment length(s) may be 220 bps INFO @ Tue, 16 Jun 2020 11:53:37: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619561/SRX6619561.10_model.r WARNING @ Tue, 16 Jun 2020 11:53:37: #2 Since the d (220) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:53:37: #2 You may need to consider one of the other alternative d(s): 220 WARNING @ Tue, 16 Jun 2020 11:53:37: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:53:37: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:53:37: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:53:42: 40000000 INFO @ Tue, 16 Jun 2020 11:53:46: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:53:51: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:53:51: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:53:51: #1 total tags in treatment: 12102724 INFO @ Tue, 16 Jun 2020 11:53:51: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:53:51: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:53:51: #1 tags after filtering in treatment: 9431057 INFO @ Tue, 16 Jun 2020 11:53:51: #1 Redundant rate of treatment: 0.22 INFO @ Tue, 16 Jun 2020 11:53:51: #1 finished! INFO @ Tue, 16 Jun 2020 11:53:51: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:53:51: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:53:52: #2 number of paired peaks: 547 WARNING @ Tue, 16 Jun 2020 11:53:52: Fewer paired peaks (547) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 547 pairs to build model! INFO @ Tue, 16 Jun 2020 11:53:52: start model_add_line... INFO @ Tue, 16 Jun 2020 11:53:52: start X-correlation... INFO @ Tue, 16 Jun 2020 11:53:52: end of X-cor INFO @ Tue, 16 Jun 2020 11:53:52: #2 finished! INFO @ Tue, 16 Jun 2020 11:53:52: #2 predicted fragment length is 220 bps INFO @ Tue, 16 Jun 2020 11:53:52: #2 alternative fragment length(s) may be 220 bps INFO @ Tue, 16 Jun 2020 11:53:52: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619561/SRX6619561.20_model.r WARNING @ Tue, 16 Jun 2020 11:53:52: #2 Since the d (220) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:53:52: #2 You may need to consider one of the other alternative d(s): 220 WARNING @ Tue, 16 Jun 2020 11:53:52: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:53:52: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:53:52: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:53:59: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619561/SRX6619561.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:53:59: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619561/SRX6619561.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:53:59: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619561/SRX6619561.05_summits.bed INFO @ Tue, 16 Jun 2020 11:53:59: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (1211 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:54:02: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:54:15: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619561/SRX6619561.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:54:15: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619561/SRX6619561.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:54:15: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619561/SRX6619561.10_summits.bed INFO @ Tue, 16 Jun 2020 11:54:15: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (583 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:54:17: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:54:30: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619561/SRX6619561.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:54:30: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619561/SRX6619561.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:54:30: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619561/SRX6619561.20_summits.bed INFO @ Tue, 16 Jun 2020 11:54:30: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (310 records, 4 fields): 1 millis CompletedMACS2peakCalling