Job ID = 6368854 SRX = SRX6619552 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:33:30 prefetch.2.10.7: 1) Downloading 'SRR9866056'... 2020-06-16T00:33:30 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:50:25 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:50:25 prefetch.2.10.7: 1) 'SRR9866056' was downloaded successfully 2020-06-16T00:50:25 prefetch.2.10.7: 'SRR9866056' has 0 unresolved dependencies Read 31867768 spots for SRR9866056/SRR9866056.sra Written 31867768 spots for SRR9866056/SRR9866056.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:26:13 31867768 reads; of these: 31867768 (100.00%) were paired; of these: 15033961 (47.18%) aligned concordantly 0 times 13811998 (43.34%) aligned concordantly exactly 1 time 3021809 (9.48%) aligned concordantly >1 times ---- 15033961 pairs aligned concordantly 0 times; of these: 7465297 (49.66%) aligned discordantly 1 time ---- 7568664 pairs aligned 0 times concordantly or discordantly; of these: 15137328 mates make up the pairs; of these: 12346355 (81.56%) aligned 0 times 1077131 (7.12%) aligned exactly 1 time 1713842 (11.32%) aligned >1 times 80.63% overall alignment rate Time searching: 01:26:14 Overall time: 01:26:14 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 3140889 / 23944393 = 0.1312 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:54:17: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619552/SRX6619552.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619552/SRX6619552.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619552/SRX6619552.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619552/SRX6619552.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:54:17: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:54:17: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:54:29: 1000000 INFO @ Tue, 16 Jun 2020 11:54:39: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:54:47: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619552/SRX6619552.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619552/SRX6619552.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619552/SRX6619552.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619552/SRX6619552.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:54:47: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:54:47: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:54:51: 3000000 INFO @ Tue, 16 Jun 2020 11:55:00: 1000000 INFO @ Tue, 16 Jun 2020 11:55:03: 4000000 INFO @ Tue, 16 Jun 2020 11:55:12: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:55:15: 5000000 INFO @ Tue, 16 Jun 2020 11:55:17: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619552/SRX6619552.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619552/SRX6619552.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619552/SRX6619552.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619552/SRX6619552.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:55:17: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:55:17: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:55:25: 3000000 INFO @ Tue, 16 Jun 2020 11:55:29: 6000000 INFO @ Tue, 16 Jun 2020 11:55:30: 1000000 INFO @ Tue, 16 Jun 2020 11:55:39: 4000000 INFO @ Tue, 16 Jun 2020 11:55:43: 7000000 INFO @ Tue, 16 Jun 2020 11:55:43: 2000000 INFO @ Tue, 16 Jun 2020 11:55:54: 5000000 INFO @ Tue, 16 Jun 2020 11:55:57: 3000000 INFO @ Tue, 16 Jun 2020 11:55:57: 8000000 INFO @ Tue, 16 Jun 2020 11:56:10: 6000000 INFO @ Tue, 16 Jun 2020 11:56:12: 4000000 INFO @ Tue, 16 Jun 2020 11:56:12: 9000000 INFO @ Tue, 16 Jun 2020 11:56:24: 7000000 INFO @ Tue, 16 Jun 2020 11:56:25: 5000000 INFO @ Tue, 16 Jun 2020 11:56:26: 10000000 INFO @ Tue, 16 Jun 2020 11:56:38: 8000000 INFO @ Tue, 16 Jun 2020 11:56:38: 6000000 INFO @ Tue, 16 Jun 2020 11:56:40: 11000000 INFO @ Tue, 16 Jun 2020 11:56:51: 7000000 INFO @ Tue, 16 Jun 2020 11:56:52: 9000000 INFO @ Tue, 16 Jun 2020 11:56:54: 12000000 INFO @ Tue, 16 Jun 2020 11:57:04: 8000000 INFO @ Tue, 16 Jun 2020 11:57:06: 10000000 INFO @ Tue, 16 Jun 2020 11:57:08: 13000000 INFO @ Tue, 16 Jun 2020 11:57:17: 9000000 INFO @ Tue, 16 Jun 2020 11:57:19: 11000000 INFO @ Tue, 16 Jun 2020 11:57:22: 14000000 INFO @ Tue, 16 Jun 2020 11:57:30: 10000000 INFO @ Tue, 16 Jun 2020 11:57:33: 12000000 INFO @ Tue, 16 Jun 2020 11:57:36: 15000000 INFO @ Tue, 16 Jun 2020 11:57:43: 11000000 INFO @ Tue, 16 Jun 2020 11:57:48: 13000000 INFO @ Tue, 16 Jun 2020 11:57:50: 16000000 INFO @ Tue, 16 Jun 2020 11:57:56: 12000000 INFO @ Tue, 16 Jun 2020 11:58:02: 14000000 INFO @ Tue, 16 Jun 2020 11:58:05: 17000000 INFO @ Tue, 16 Jun 2020 11:58:09: 13000000 INFO @ Tue, 16 Jun 2020 11:58:17: 15000000 INFO @ Tue, 16 Jun 2020 11:58:20: 18000000 INFO @ Tue, 16 Jun 2020 11:58:23: 14000000 INFO @ Tue, 16 Jun 2020 11:58:32: 16000000 INFO @ Tue, 16 Jun 2020 11:58:35: 19000000 INFO @ Tue, 16 Jun 2020 11:58:37: 15000000 INFO @ Tue, 16 Jun 2020 11:58:48: 17000000 INFO @ Tue, 16 Jun 2020 11:58:51: 20000000 INFO @ Tue, 16 Jun 2020 11:58:51: 16000000 INFO @ Tue, 16 Jun 2020 11:59:03: 18000000 INFO @ Tue, 16 Jun 2020 11:59:05: 17000000 INFO @ Tue, 16 Jun 2020 11:59:06: 21000000 INFO @ Tue, 16 Jun 2020 11:59:18: 19000000 INFO @ Tue, 16 Jun 2020 11:59:18: 18000000 INFO @ Tue, 16 Jun 2020 11:59:22: 22000000 INFO @ Tue, 16 Jun 2020 11:59:31: 19000000 INFO @ Tue, 16 Jun 2020 11:59:32: 20000000 INFO @ Tue, 16 Jun 2020 11:59:38: 23000000 INFO @ Tue, 16 Jun 2020 11:59:45: 20000000 INFO @ Tue, 16 Jun 2020 11:59:47: 21000000 INFO @ Tue, 16 Jun 2020 11:59:54: 24000000 INFO @ Tue, 16 Jun 2020 11:59:58: 21000000 INFO @ Tue, 16 Jun 2020 12:00:02: 22000000 INFO @ Tue, 16 Jun 2020 12:00:09: 25000000 INFO @ Tue, 16 Jun 2020 12:00:11: 22000000 INFO @ Tue, 16 Jun 2020 12:00:17: 23000000 INFO @ Tue, 16 Jun 2020 12:00:24: 23000000 INFO @ Tue, 16 Jun 2020 12:00:24: 26000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 12:00:32: 24000000 INFO @ Tue, 16 Jun 2020 12:00:36: 24000000 INFO @ Tue, 16 Jun 2020 12:00:39: 27000000 INFO @ Tue, 16 Jun 2020 12:00:47: 25000000 INFO @ Tue, 16 Jun 2020 12:00:49: 25000000 INFO @ Tue, 16 Jun 2020 12:00:54: 28000000 INFO @ Tue, 16 Jun 2020 12:01:02: 26000000 INFO @ Tue, 16 Jun 2020 12:01:02: 26000000 INFO @ Tue, 16 Jun 2020 12:01:09: 29000000 INFO @ Tue, 16 Jun 2020 12:01:15: 27000000 INFO @ Tue, 16 Jun 2020 12:01:17: 27000000 INFO @ Tue, 16 Jun 2020 12:01:24: 30000000 INFO @ Tue, 16 Jun 2020 12:01:27: 28000000 INFO @ Tue, 16 Jun 2020 12:01:31: 28000000 INFO @ Tue, 16 Jun 2020 12:01:38: 31000000 INFO @ Tue, 16 Jun 2020 12:01:40: 29000000 INFO @ Tue, 16 Jun 2020 12:01:45: 29000000 INFO @ Tue, 16 Jun 2020 12:01:52: 30000000 INFO @ Tue, 16 Jun 2020 12:01:52: 32000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 12:01:59: 30000000 INFO @ Tue, 16 Jun 2020 12:02:05: 31000000 INFO @ Tue, 16 Jun 2020 12:02:06: 33000000 INFO @ Tue, 16 Jun 2020 12:02:14: 31000000 INFO @ Tue, 16 Jun 2020 12:02:17: 32000000 INFO @ Tue, 16 Jun 2020 12:02:21: 34000000 INFO @ Tue, 16 Jun 2020 12:02:28: 32000000 INFO @ Tue, 16 Jun 2020 12:02:29: 33000000 INFO @ Tue, 16 Jun 2020 12:02:34: 35000000 INFO @ Tue, 16 Jun 2020 12:02:41: 34000000 INFO @ Tue, 16 Jun 2020 12:02:41: 33000000 INFO @ Tue, 16 Jun 2020 12:02:48: 36000000 INFO @ Tue, 16 Jun 2020 12:02:52: 35000000 INFO @ Tue, 16 Jun 2020 12:02:54: 34000000 INFO @ Tue, 16 Jun 2020 12:03:02: 37000000 INFO @ Tue, 16 Jun 2020 12:03:04: 36000000 INFO @ Tue, 16 Jun 2020 12:03:07: 35000000 INFO @ Tue, 16 Jun 2020 12:03:16: 37000000 INFO @ Tue, 16 Jun 2020 12:03:16: 38000000 INFO @ Tue, 16 Jun 2020 12:03:20: 36000000 INFO @ Tue, 16 Jun 2020 12:03:27: 38000000 INFO @ Tue, 16 Jun 2020 12:03:29: 39000000 INFO @ Tue, 16 Jun 2020 12:03:34: 37000000 INFO @ Tue, 16 Jun 2020 12:03:39: 39000000 INFO @ Tue, 16 Jun 2020 12:03:42: 40000000 INFO @ Tue, 16 Jun 2020 12:03:46: 38000000 INFO @ Tue, 16 Jun 2020 12:03:50: 40000000 INFO @ Tue, 16 Jun 2020 12:03:56: 41000000 INFO @ Tue, 16 Jun 2020 12:04:00: 39000000 INFO @ Tue, 16 Jun 2020 12:04:02: 41000000 INFO @ Tue, 16 Jun 2020 12:04:08: 42000000 INFO @ Tue, 16 Jun 2020 12:04:12: 40000000 INFO @ Tue, 16 Jun 2020 12:04:13: 42000000 INFO @ Tue, 16 Jun 2020 12:04:22: 43000000 INFO @ Tue, 16 Jun 2020 12:04:24: 43000000 INFO @ Tue, 16 Jun 2020 12:04:25: 41000000 INFO @ Tue, 16 Jun 2020 12:04:34: 44000000 INFO @ Tue, 16 Jun 2020 12:04:36: 44000000 INFO @ Tue, 16 Jun 2020 12:04:38: 42000000 INFO @ Tue, 16 Jun 2020 12:04:47: 45000000 INFO @ Tue, 16 Jun 2020 12:04:47: 45000000 INFO @ Tue, 16 Jun 2020 12:04:49: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:04:49: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:04:49: #1 total tags in treatment: 14483050 INFO @ Tue, 16 Jun 2020 12:04:49: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:04:49: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:04:49: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:04:49: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:04:49: #1 total tags in treatment: 14483050 INFO @ Tue, 16 Jun 2020 12:04:49: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:04:49: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:04:49: #1 tags after filtering in treatment: 12188601 INFO @ Tue, 16 Jun 2020 12:04:49: #1 Redundant rate of treatment: 0.16 INFO @ Tue, 16 Jun 2020 12:04:49: #1 finished! INFO @ Tue, 16 Jun 2020 12:04:49: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:04:49: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:04:49: #1 tags after filtering in treatment: 12188601 INFO @ Tue, 16 Jun 2020 12:04:49: #1 Redundant rate of treatment: 0.16 INFO @ Tue, 16 Jun 2020 12:04:49: #1 finished! INFO @ Tue, 16 Jun 2020 12:04:49: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:04:49: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:04:50: #2 number of paired peaks: 296 WARNING @ Tue, 16 Jun 2020 12:04:50: Fewer paired peaks (296) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 296 pairs to build model! INFO @ Tue, 16 Jun 2020 12:04:50: start model_add_line... INFO @ Tue, 16 Jun 2020 12:04:50: #2 number of paired peaks: 296 WARNING @ Tue, 16 Jun 2020 12:04:50: Fewer paired peaks (296) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 296 pairs to build model! INFO @ Tue, 16 Jun 2020 12:04:50: start model_add_line... INFO @ Tue, 16 Jun 2020 12:04:50: start X-correlation... INFO @ Tue, 16 Jun 2020 12:04:50: end of X-cor INFO @ Tue, 16 Jun 2020 12:04:50: #2 finished! INFO @ Tue, 16 Jun 2020 12:04:50: #2 predicted fragment length is 206 bps INFO @ Tue, 16 Jun 2020 12:04:50: #2 alternative fragment length(s) may be 206 bps INFO @ Tue, 16 Jun 2020 12:04:50: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619552/SRX6619552.20_model.r WARNING @ Tue, 16 Jun 2020 12:04:50: #2 Since the d (206) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:04:50: #2 You may need to consider one of the other alternative d(s): 206 WARNING @ Tue, 16 Jun 2020 12:04:50: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:04:50: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:04:50: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:04:50: start X-correlation... INFO @ Tue, 16 Jun 2020 12:04:50: end of X-cor INFO @ Tue, 16 Jun 2020 12:04:50: #2 finished! INFO @ Tue, 16 Jun 2020 12:04:50: #2 predicted fragment length is 206 bps INFO @ Tue, 16 Jun 2020 12:04:50: #2 alternative fragment length(s) may be 206 bps INFO @ Tue, 16 Jun 2020 12:04:50: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619552/SRX6619552.05_model.r WARNING @ Tue, 16 Jun 2020 12:04:50: #2 Since the d (206) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:04:50: #2 You may need to consider one of the other alternative d(s): 206 WARNING @ Tue, 16 Jun 2020 12:04:50: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:04:50: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:04:50: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:04:51: 43000000 INFO @ Tue, 16 Jun 2020 12:05:02: 44000000 INFO @ Tue, 16 Jun 2020 12:05:13: 45000000 INFO @ Tue, 16 Jun 2020 12:05:15: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:05:15: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:05:15: #1 total tags in treatment: 14483050 INFO @ Tue, 16 Jun 2020 12:05:15: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:05:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:05:15: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:05:15: #1 tags after filtering in treatment: 12188601 INFO @ Tue, 16 Jun 2020 12:05:15: #1 Redundant rate of treatment: 0.16 INFO @ Tue, 16 Jun 2020 12:05:15: #1 finished! INFO @ Tue, 16 Jun 2020 12:05:15: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:05:15: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:05:15: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:05:16: #2 number of paired peaks: 296 WARNING @ Tue, 16 Jun 2020 12:05:16: Fewer paired peaks (296) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 296 pairs to build model! INFO @ Tue, 16 Jun 2020 12:05:16: start model_add_line... INFO @ Tue, 16 Jun 2020 12:05:16: start X-correlation... INFO @ Tue, 16 Jun 2020 12:05:16: end of X-cor INFO @ Tue, 16 Jun 2020 12:05:16: #2 finished! INFO @ Tue, 16 Jun 2020 12:05:16: #2 predicted fragment length is 206 bps INFO @ Tue, 16 Jun 2020 12:05:16: #2 alternative fragment length(s) may be 206 bps INFO @ Tue, 16 Jun 2020 12:05:16: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619552/SRX6619552.10_model.r WARNING @ Tue, 16 Jun 2020 12:05:16: #2 Since the d (206) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:05:16: #2 You may need to consider one of the other alternative d(s): 206 WARNING @ Tue, 16 Jun 2020 12:05:16: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:05:16: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:05:16: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:05:27: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619552/SRX6619552.20_peaks.xls INFO @ Tue, 16 Jun 2020 12:05:27: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619552/SRX6619552.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:05:27: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619552/SRX6619552.20_summits.bed INFO @ Tue, 16 Jun 2020 12:05:27: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (234 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 12:05:27: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619552/SRX6619552.05_peaks.xls INFO @ Tue, 16 Jun 2020 12:05:27: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619552/SRX6619552.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:05:27: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619552/SRX6619552.05_summits.bed INFO @ Tue, 16 Jun 2020 12:05:27: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (559 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 12:05:41: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:05:53: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619552/SRX6619552.10_peaks.xls INFO @ Tue, 16 Jun 2020 12:05:53: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619552/SRX6619552.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:05:53: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619552/SRX6619552.10_summits.bed INFO @ Tue, 16 Jun 2020 12:05:53: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (379 records, 4 fields): 115 millis CompletedMACS2peakCalling