Job ID = 6368853 SRX = SRX6619551 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:49:10 prefetch.2.10.7: 1) Downloading 'SRR9866057'... 2020-06-16T00:49:10 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T01:01:14 prefetch.2.10.7: HTTPS download succeed 2020-06-16T01:01:14 prefetch.2.10.7: 1) 'SRR9866057' was downloaded successfully 2020-06-16T01:01:14 prefetch.2.10.7: 'SRR9866057' has 0 unresolved dependencies Read 31068609 spots for SRR9866057/SRR9866057.sra Written 31068609 spots for SRR9866057/SRR9866057.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:19:14 31068609 reads; of these: 31068609 (100.00%) were paired; of these: 13865466 (44.63%) aligned concordantly 0 times 14359073 (46.22%) aligned concordantly exactly 1 time 2844070 (9.15%) aligned concordantly >1 times ---- 13865466 pairs aligned concordantly 0 times; of these: 7287201 (52.56%) aligned discordantly 1 time ---- 6578265 pairs aligned 0 times concordantly or discordantly; of these: 13156530 mates make up the pairs; of these: 10894874 (82.81%) aligned 0 times 824268 (6.27%) aligned exactly 1 time 1437388 (10.93%) aligned >1 times 82.47% overall alignment rate Time searching: 01:19:14 Overall time: 01:19:14 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 2582145 / 23950443 = 0.1078 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:55:54: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619551/SRX6619551.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619551/SRX6619551.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619551/SRX6619551.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619551/SRX6619551.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:55:54: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:55:54: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:56:04: 1000000 INFO @ Tue, 16 Jun 2020 11:56:13: 2000000 INFO @ Tue, 16 Jun 2020 11:56:22: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:56:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619551/SRX6619551.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619551/SRX6619551.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619551/SRX6619551.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619551/SRX6619551.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:56:24: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:56:24: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:56:32: 4000000 INFO @ Tue, 16 Jun 2020 11:56:35: 1000000 INFO @ Tue, 16 Jun 2020 11:56:42: 5000000 INFO @ Tue, 16 Jun 2020 11:56:46: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:56:53: 6000000 INFO @ Tue, 16 Jun 2020 11:56:55: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619551/SRX6619551.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619551/SRX6619551.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619551/SRX6619551.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619551/SRX6619551.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:56:55: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:56:55: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:56:58: 3000000 INFO @ Tue, 16 Jun 2020 11:57:05: 7000000 INFO @ Tue, 16 Jun 2020 11:57:07: 1000000 INFO @ Tue, 16 Jun 2020 11:57:11: 4000000 INFO @ Tue, 16 Jun 2020 11:57:18: 2000000 INFO @ Tue, 16 Jun 2020 11:57:18: 8000000 INFO @ Tue, 16 Jun 2020 11:57:23: 5000000 INFO @ Tue, 16 Jun 2020 11:57:29: 3000000 INFO @ Tue, 16 Jun 2020 11:57:30: 9000000 INFO @ Tue, 16 Jun 2020 11:57:35: 6000000 INFO @ Tue, 16 Jun 2020 11:57:40: 4000000 INFO @ Tue, 16 Jun 2020 11:57:43: 10000000 INFO @ Tue, 16 Jun 2020 11:57:48: 7000000 INFO @ Tue, 16 Jun 2020 11:57:50: 5000000 INFO @ Tue, 16 Jun 2020 11:57:55: 11000000 INFO @ Tue, 16 Jun 2020 11:58:00: 6000000 INFO @ Tue, 16 Jun 2020 11:58:01: 8000000 INFO @ Tue, 16 Jun 2020 11:58:06: 12000000 INFO @ Tue, 16 Jun 2020 11:58:09: 7000000 INFO @ Tue, 16 Jun 2020 11:58:13: 9000000 INFO @ Tue, 16 Jun 2020 11:58:18: 13000000 INFO @ Tue, 16 Jun 2020 11:58:19: 8000000 INFO @ Tue, 16 Jun 2020 11:58:25: 10000000 INFO @ Tue, 16 Jun 2020 11:58:29: 14000000 INFO @ Tue, 16 Jun 2020 11:58:29: 9000000 INFO @ Tue, 16 Jun 2020 11:58:36: 11000000 INFO @ Tue, 16 Jun 2020 11:58:39: 10000000 INFO @ Tue, 16 Jun 2020 11:58:40: 15000000 INFO @ Tue, 16 Jun 2020 11:58:48: 12000000 INFO @ Tue, 16 Jun 2020 11:58:49: 11000000 INFO @ Tue, 16 Jun 2020 11:58:51: 16000000 INFO @ Tue, 16 Jun 2020 11:58:58: 12000000 INFO @ Tue, 16 Jun 2020 11:58:58: 13000000 INFO @ Tue, 16 Jun 2020 11:59:02: 17000000 INFO @ Tue, 16 Jun 2020 11:59:07: 13000000 INFO @ Tue, 16 Jun 2020 11:59:09: 14000000 INFO @ Tue, 16 Jun 2020 11:59:13: 18000000 INFO @ Tue, 16 Jun 2020 11:59:20: 14000000 INFO @ Tue, 16 Jun 2020 11:59:22: 15000000 INFO @ Tue, 16 Jun 2020 11:59:25: 19000000 INFO @ Tue, 16 Jun 2020 11:59:31: 15000000 INFO @ Tue, 16 Jun 2020 11:59:33: 16000000 INFO @ Tue, 16 Jun 2020 11:59:36: 20000000 INFO @ Tue, 16 Jun 2020 11:59:41: 16000000 INFO @ Tue, 16 Jun 2020 11:59:44: 17000000 INFO @ Tue, 16 Jun 2020 11:59:47: 21000000 INFO @ Tue, 16 Jun 2020 11:59:51: 17000000 INFO @ Tue, 16 Jun 2020 11:59:55: 18000000 INFO @ Tue, 16 Jun 2020 11:59:57: 22000000 INFO @ Tue, 16 Jun 2020 12:00:00: 18000000 INFO @ Tue, 16 Jun 2020 12:00:06: 19000000 INFO @ Tue, 16 Jun 2020 12:00:08: 23000000 INFO @ Tue, 16 Jun 2020 12:00:10: 19000000 INFO @ Tue, 16 Jun 2020 12:00:16: 20000000 INFO @ Tue, 16 Jun 2020 12:00:19: 24000000 INFO @ Tue, 16 Jun 2020 12:00:19: 20000000 INFO @ Tue, 16 Jun 2020 12:00:27: 21000000 INFO @ Tue, 16 Jun 2020 12:00:29: 21000000 INFO @ Tue, 16 Jun 2020 12:00:30: 25000000 INFO @ Tue, 16 Jun 2020 12:00:38: 22000000 INFO @ Tue, 16 Jun 2020 12:00:39: 22000000 INFO @ Tue, 16 Jun 2020 12:00:41: 26000000 INFO @ Tue, 16 Jun 2020 12:00:49: 23000000 INFO @ Tue, 16 Jun 2020 12:00:49: 23000000 INFO @ Tue, 16 Jun 2020 12:00:52: 27000000 INFO @ Tue, 16 Jun 2020 12:00:59: 24000000 INFO @ Tue, 16 Jun 2020 12:00:59: 24000000 INFO @ Tue, 16 Jun 2020 12:01:02: 28000000 INFO @ Tue, 16 Jun 2020 12:01:09: 25000000 INFO @ Tue, 16 Jun 2020 12:01:10: 25000000 INFO @ Tue, 16 Jun 2020 12:01:13: 29000000 INFO @ Tue, 16 Jun 2020 12:01:19: 26000000 INFO @ Tue, 16 Jun 2020 12:01:21: 26000000 INFO @ Tue, 16 Jun 2020 12:01:24: 30000000 INFO @ Tue, 16 Jun 2020 12:01:29: 27000000 INFO @ Tue, 16 Jun 2020 12:01:32: 27000000 INFO @ Tue, 16 Jun 2020 12:01:35: 31000000 INFO @ Tue, 16 Jun 2020 12:01:38: 28000000 INFO @ Tue, 16 Jun 2020 12:01:42: 28000000 INFO @ Tue, 16 Jun 2020 12:01:46: 32000000 INFO @ Tue, 16 Jun 2020 12:01:48: 29000000 INFO @ Tue, 16 Jun 2020 12:01:53: 29000000 INFO @ Tue, 16 Jun 2020 12:01:56: 33000000 INFO @ Tue, 16 Jun 2020 12:01:58: 30000000 INFO @ Tue, 16 Jun 2020 12:02:04: 30000000 INFO @ Tue, 16 Jun 2020 12:02:08: 34000000 INFO @ Tue, 16 Jun 2020 12:02:08: 31000000 INFO @ Tue, 16 Jun 2020 12:02:16: 31000000 INFO @ Tue, 16 Jun 2020 12:02:19: 32000000 INFO @ Tue, 16 Jun 2020 12:02:19: 35000000 INFO @ Tue, 16 Jun 2020 12:02:27: 32000000 INFO @ Tue, 16 Jun 2020 12:02:30: 33000000 INFO @ Tue, 16 Jun 2020 12:02:30: 36000000 INFO @ Tue, 16 Jun 2020 12:02:39: 33000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 12:02:43: 37000000 INFO @ Tue, 16 Jun 2020 12:02:45: 34000000 INFO @ Tue, 16 Jun 2020 12:02:50: 34000000 INFO @ Tue, 16 Jun 2020 12:02:54: 38000000 INFO @ Tue, 16 Jun 2020 12:02:56: 35000000 INFO @ Tue, 16 Jun 2020 12:03:01: 35000000 INFO @ Tue, 16 Jun 2020 12:03:05: 39000000 INFO @ Tue, 16 Jun 2020 12:03:06: 36000000 INFO @ Tue, 16 Jun 2020 12:03:12: 36000000 INFO @ Tue, 16 Jun 2020 12:03:16: 37000000 INFO @ Tue, 16 Jun 2020 12:03:17: 40000000 INFO @ Tue, 16 Jun 2020 12:03:24: 37000000 INFO @ Tue, 16 Jun 2020 12:03:26: 38000000 INFO @ Tue, 16 Jun 2020 12:03:28: 41000000 INFO @ Tue, 16 Jun 2020 12:03:35: 38000000 INFO @ Tue, 16 Jun 2020 12:03:36: 39000000 INFO @ Tue, 16 Jun 2020 12:03:39: 42000000 INFO @ Tue, 16 Jun 2020 12:03:46: 39000000 INFO @ Tue, 16 Jun 2020 12:03:47: 40000000 INFO @ Tue, 16 Jun 2020 12:03:50: 43000000 INFO @ Tue, 16 Jun 2020 12:03:58: 40000000 INFO @ Tue, 16 Jun 2020 12:03:58: 41000000 INFO @ Tue, 16 Jun 2020 12:04:02: 44000000 INFO @ Tue, 16 Jun 2020 12:04:08: 42000000 INFO @ Tue, 16 Jun 2020 12:04:09: 41000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 12:04:13: 45000000 INFO @ Tue, 16 Jun 2020 12:04:18: 43000000 INFO @ Tue, 16 Jun 2020 12:04:20: 42000000 INFO @ Tue, 16 Jun 2020 12:04:24: 46000000 INFO @ Tue, 16 Jun 2020 12:04:25: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:04:25: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:04:25: #1 total tags in treatment: 15251053 INFO @ Tue, 16 Jun 2020 12:04:25: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:04:25: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:04:26: #1 tags after filtering in treatment: 13115585 INFO @ Tue, 16 Jun 2020 12:04:26: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 12:04:26: #1 finished! INFO @ Tue, 16 Jun 2020 12:04:26: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:04:26: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:04:27: #2 number of paired peaks: 285 WARNING @ Tue, 16 Jun 2020 12:04:27: Fewer paired peaks (285) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 285 pairs to build model! INFO @ Tue, 16 Jun 2020 12:04:27: start model_add_line... INFO @ Tue, 16 Jun 2020 12:04:27: start X-correlation... INFO @ Tue, 16 Jun 2020 12:04:27: end of X-cor INFO @ Tue, 16 Jun 2020 12:04:27: #2 finished! INFO @ Tue, 16 Jun 2020 12:04:27: #2 predicted fragment length is 197 bps INFO @ Tue, 16 Jun 2020 12:04:27: #2 alternative fragment length(s) may be 4,197,216 bps INFO @ Tue, 16 Jun 2020 12:04:27: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619551/SRX6619551.05_model.r WARNING @ Tue, 16 Jun 2020 12:04:27: #2 Since the d (197) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:04:27: #2 You may need to consider one of the other alternative d(s): 4,197,216 WARNING @ Tue, 16 Jun 2020 12:04:27: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:04:27: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:04:27: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:04:29: 44000000 INFO @ Tue, 16 Jun 2020 12:04:30: 43000000 INFO @ Tue, 16 Jun 2020 12:04:41: 45000000 INFO @ Tue, 16 Jun 2020 12:04:41: 44000000 INFO @ Tue, 16 Jun 2020 12:04:51: 45000000 INFO @ Tue, 16 Jun 2020 12:04:52: 46000000 INFO @ Tue, 16 Jun 2020 12:04:52: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:04:52: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:04:52: #1 total tags in treatment: 15251053 INFO @ Tue, 16 Jun 2020 12:04:52: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:04:52: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:04:53: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:04:53: #1 tags after filtering in treatment: 13115585 INFO @ Tue, 16 Jun 2020 12:04:53: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 12:04:53: #1 finished! INFO @ Tue, 16 Jun 2020 12:04:53: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:04:53: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:04:54: #2 number of paired peaks: 285 WARNING @ Tue, 16 Jun 2020 12:04:54: Fewer paired peaks (285) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 285 pairs to build model! INFO @ Tue, 16 Jun 2020 12:04:54: start model_add_line... INFO @ Tue, 16 Jun 2020 12:04:54: start X-correlation... INFO @ Tue, 16 Jun 2020 12:04:54: end of X-cor INFO @ Tue, 16 Jun 2020 12:04:54: #2 finished! INFO @ Tue, 16 Jun 2020 12:04:54: #2 predicted fragment length is 197 bps INFO @ Tue, 16 Jun 2020 12:04:54: #2 alternative fragment length(s) may be 4,197,216 bps INFO @ Tue, 16 Jun 2020 12:04:54: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619551/SRX6619551.20_model.r WARNING @ Tue, 16 Jun 2020 12:04:54: #2 Since the d (197) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:04:54: #2 You may need to consider one of the other alternative d(s): 4,197,216 WARNING @ Tue, 16 Jun 2020 12:04:54: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:04:54: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:04:54: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:05:01: 46000000 INFO @ Tue, 16 Jun 2020 12:05:02: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:05:02: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:05:02: #1 total tags in treatment: 15251053 INFO @ Tue, 16 Jun 2020 12:05:02: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:05:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:05:02: #1 tags after filtering in treatment: 13115585 INFO @ Tue, 16 Jun 2020 12:05:02: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 12:05:02: #1 finished! INFO @ Tue, 16 Jun 2020 12:05:02: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:05:02: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:05:03: #2 number of paired peaks: 285 WARNING @ Tue, 16 Jun 2020 12:05:03: Fewer paired peaks (285) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 285 pairs to build model! INFO @ Tue, 16 Jun 2020 12:05:03: start model_add_line... INFO @ Tue, 16 Jun 2020 12:05:03: start X-correlation... INFO @ Tue, 16 Jun 2020 12:05:03: end of X-cor INFO @ Tue, 16 Jun 2020 12:05:03: #2 finished! INFO @ Tue, 16 Jun 2020 12:05:03: #2 predicted fragment length is 197 bps INFO @ Tue, 16 Jun 2020 12:05:03: #2 alternative fragment length(s) may be 4,197,216 bps INFO @ Tue, 16 Jun 2020 12:05:03: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619551/SRX6619551.10_model.r WARNING @ Tue, 16 Jun 2020 12:05:03: #2 Since the d (197) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:05:03: #2 You may need to consider one of the other alternative d(s): 4,197,216 WARNING @ Tue, 16 Jun 2020 12:05:03: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:05:03: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:05:03: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:05:04: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619551/SRX6619551.05_peaks.xls INFO @ Tue, 16 Jun 2020 12:05:04: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619551/SRX6619551.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:05:04: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619551/SRX6619551.05_summits.bed INFO @ Tue, 16 Jun 2020 12:05:04: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (480 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 12:05:20: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:05:32: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619551/SRX6619551.20_peaks.xls INFO @ Tue, 16 Jun 2020 12:05:32: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619551/SRX6619551.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:05:32: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619551/SRX6619551.20_summits.bed INFO @ Tue, 16 Jun 2020 12:05:32: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (230 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 12:05:33: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:05:46: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619551/SRX6619551.10_peaks.xls INFO @ Tue, 16 Jun 2020 12:05:46: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619551/SRX6619551.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:05:46: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619551/SRX6619551.10_summits.bed INFO @ Tue, 16 Jun 2020 12:05:46: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (350 records, 4 fields): 2 millis CompletedMACS2peakCalling