Job ID = 6368848 SRX = SRX6619547 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:24:51 prefetch.2.10.7: 1) Downloading 'SRR9866062'... 2020-06-16T00:24:51 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:37:08 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:37:08 prefetch.2.10.7: 1) 'SRR9866062' was downloaded successfully 2020-06-16T00:37:08 prefetch.2.10.7: 'SRR9866062' has 0 unresolved dependencies Read 37857932 spots for SRR9866062/SRR9866062.sra Written 37857932 spots for SRR9866062/SRR9866062.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:28:40 37857932 reads; of these: 37857932 (100.00%) were paired; of these: 21367763 (56.44%) aligned concordantly 0 times 13785345 (36.41%) aligned concordantly exactly 1 time 2704824 (7.14%) aligned concordantly >1 times ---- 21367763 pairs aligned concordantly 0 times; of these: 10642313 (49.81%) aligned discordantly 1 time ---- 10725450 pairs aligned 0 times concordantly or discordantly; of these: 21450900 mates make up the pairs; of these: 17553172 (81.83%) aligned 0 times 1868327 (8.71%) aligned exactly 1 time 2029401 (9.46%) aligned >1 times 76.82% overall alignment rate Time searching: 01:28:41 Overall time: 01:28:41 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 44 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 4245290 / 26461604 = 0.1604 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:43:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619547/SRX6619547.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619547/SRX6619547.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619547/SRX6619547.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619547/SRX6619547.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:43:48: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:43:48: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:43:56: 1000000 INFO @ Tue, 16 Jun 2020 11:44:04: 2000000 INFO @ Tue, 16 Jun 2020 11:44:12: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:44:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619547/SRX6619547.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619547/SRX6619547.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619547/SRX6619547.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619547/SRX6619547.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:44:18: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:44:18: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:44:20: 4000000 INFO @ Tue, 16 Jun 2020 11:44:27: 1000000 INFO @ Tue, 16 Jun 2020 11:44:29: 5000000 INFO @ Tue, 16 Jun 2020 11:44:36: 2000000 INFO @ Tue, 16 Jun 2020 11:44:38: 6000000 INFO @ Tue, 16 Jun 2020 11:44:44: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:44:47: 7000000 INFO @ Tue, 16 Jun 2020 11:44:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619547/SRX6619547.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619547/SRX6619547.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619547/SRX6619547.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619547/SRX6619547.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:44:48: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:44:48: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:44:53: 4000000 INFO @ Tue, 16 Jun 2020 11:44:56: 8000000 INFO @ Tue, 16 Jun 2020 11:44:56: 1000000 INFO @ Tue, 16 Jun 2020 11:45:02: 5000000 INFO @ Tue, 16 Jun 2020 11:45:04: 2000000 INFO @ Tue, 16 Jun 2020 11:45:05: 9000000 INFO @ Tue, 16 Jun 2020 11:45:12: 6000000 INFO @ Tue, 16 Jun 2020 11:45:12: 3000000 INFO @ Tue, 16 Jun 2020 11:45:14: 10000000 INFO @ Tue, 16 Jun 2020 11:45:20: 4000000 INFO @ Tue, 16 Jun 2020 11:45:21: 7000000 INFO @ Tue, 16 Jun 2020 11:45:24: 11000000 INFO @ Tue, 16 Jun 2020 11:45:28: 5000000 INFO @ Tue, 16 Jun 2020 11:45:30: 8000000 INFO @ Tue, 16 Jun 2020 11:45:33: 12000000 INFO @ Tue, 16 Jun 2020 11:45:35: 6000000 INFO @ Tue, 16 Jun 2020 11:45:39: 9000000 INFO @ Tue, 16 Jun 2020 11:45:42: 13000000 INFO @ Tue, 16 Jun 2020 11:45:43: 7000000 INFO @ Tue, 16 Jun 2020 11:45:48: 10000000 INFO @ Tue, 16 Jun 2020 11:45:51: 14000000 INFO @ Tue, 16 Jun 2020 11:45:51: 8000000 INFO @ Tue, 16 Jun 2020 11:45:57: 11000000 INFO @ Tue, 16 Jun 2020 11:45:59: 9000000 INFO @ Tue, 16 Jun 2020 11:46:00: 15000000 INFO @ Tue, 16 Jun 2020 11:46:06: 12000000 INFO @ Tue, 16 Jun 2020 11:46:07: 10000000 INFO @ Tue, 16 Jun 2020 11:46:09: 16000000 INFO @ Tue, 16 Jun 2020 11:46:14: 11000000 INFO @ Tue, 16 Jun 2020 11:46:15: 13000000 INFO @ Tue, 16 Jun 2020 11:46:18: 17000000 INFO @ Tue, 16 Jun 2020 11:46:22: 12000000 INFO @ Tue, 16 Jun 2020 11:46:24: 14000000 INFO @ Tue, 16 Jun 2020 11:46:27: 18000000 INFO @ Tue, 16 Jun 2020 11:46:31: 13000000 INFO @ Tue, 16 Jun 2020 11:46:33: 15000000 INFO @ Tue, 16 Jun 2020 11:46:36: 19000000 INFO @ Tue, 16 Jun 2020 11:46:40: 14000000 INFO @ Tue, 16 Jun 2020 11:46:42: 16000000 INFO @ Tue, 16 Jun 2020 11:46:45: 20000000 INFO @ Tue, 16 Jun 2020 11:46:49: 15000000 INFO @ Tue, 16 Jun 2020 11:46:51: 17000000 INFO @ Tue, 16 Jun 2020 11:46:54: 21000000 INFO @ Tue, 16 Jun 2020 11:46:58: 16000000 INFO @ Tue, 16 Jun 2020 11:47:00: 18000000 INFO @ Tue, 16 Jun 2020 11:47:03: 22000000 INFO @ Tue, 16 Jun 2020 11:47:07: 17000000 INFO @ Tue, 16 Jun 2020 11:47:09: 19000000 INFO @ Tue, 16 Jun 2020 11:47:12: 23000000 INFO @ Tue, 16 Jun 2020 11:47:16: 18000000 INFO @ Tue, 16 Jun 2020 11:47:18: 20000000 INFO @ Tue, 16 Jun 2020 11:47:20: 24000000 INFO @ Tue, 16 Jun 2020 11:47:25: 19000000 INFO @ Tue, 16 Jun 2020 11:47:27: 21000000 INFO @ Tue, 16 Jun 2020 11:47:29: 25000000 INFO @ Tue, 16 Jun 2020 11:47:34: 20000000 INFO @ Tue, 16 Jun 2020 11:47:35: 22000000 INFO @ Tue, 16 Jun 2020 11:47:38: 26000000 INFO @ Tue, 16 Jun 2020 11:47:43: 21000000 INFO @ Tue, 16 Jun 2020 11:47:44: 23000000 INFO @ Tue, 16 Jun 2020 11:47:47: 27000000 INFO @ Tue, 16 Jun 2020 11:47:52: 22000000 INFO @ Tue, 16 Jun 2020 11:47:53: 24000000 INFO @ Tue, 16 Jun 2020 11:47:57: 28000000 INFO @ Tue, 16 Jun 2020 11:48:00: 23000000 INFO @ Tue, 16 Jun 2020 11:48:03: 25000000 INFO @ Tue, 16 Jun 2020 11:48:06: 29000000 INFO @ Tue, 16 Jun 2020 11:48:09: 24000000 INFO @ Tue, 16 Jun 2020 11:48:13: 26000000 INFO @ Tue, 16 Jun 2020 11:48:16: 30000000 INFO @ Tue, 16 Jun 2020 11:48:18: 25000000 INFO @ Tue, 16 Jun 2020 11:48:23: 27000000 INFO @ Tue, 16 Jun 2020 11:48:26: 31000000 INFO @ Tue, 16 Jun 2020 11:48:28: 26000000 INFO @ Tue, 16 Jun 2020 11:48:33: 28000000 INFO @ Tue, 16 Jun 2020 11:48:36: 32000000 INFO @ Tue, 16 Jun 2020 11:48:37: 27000000 INFO @ Tue, 16 Jun 2020 11:48:43: 29000000 INFO @ Tue, 16 Jun 2020 11:48:46: 33000000 INFO @ Tue, 16 Jun 2020 11:48:48: 28000000 INFO @ Tue, 16 Jun 2020 11:48:53: 30000000 INFO @ Tue, 16 Jun 2020 11:48:57: 34000000 INFO @ Tue, 16 Jun 2020 11:49:00: 29000000 INFO @ Tue, 16 Jun 2020 11:49:04: 31000000 INFO @ Tue, 16 Jun 2020 11:49:06: 35000000 INFO @ Tue, 16 Jun 2020 11:49:12: 30000000 INFO @ Tue, 16 Jun 2020 11:49:13: 32000000 INFO @ Tue, 16 Jun 2020 11:49:16: 36000000 INFO @ Tue, 16 Jun 2020 11:49:23: 33000000 INFO @ Tue, 16 Jun 2020 11:49:24: 31000000 INFO @ Tue, 16 Jun 2020 11:49:26: 37000000 INFO @ Tue, 16 Jun 2020 11:49:32: 34000000 INFO @ Tue, 16 Jun 2020 11:49:35: 32000000 INFO @ Tue, 16 Jun 2020 11:49:36: 38000000 INFO @ Tue, 16 Jun 2020 11:49:42: 35000000 INFO @ Tue, 16 Jun 2020 11:49:45: 33000000 INFO @ Tue, 16 Jun 2020 11:49:46: 39000000 INFO @ Tue, 16 Jun 2020 11:49:51: 36000000 INFO @ Tue, 16 Jun 2020 11:49:54: 34000000 INFO @ Tue, 16 Jun 2020 11:49:56: 40000000 INFO @ Tue, 16 Jun 2020 11:50:01: 37000000 INFO @ Tue, 16 Jun 2020 11:50:02: 35000000 INFO @ Tue, 16 Jun 2020 11:50:06: 41000000 INFO @ Tue, 16 Jun 2020 11:50:11: 36000000 INFO @ Tue, 16 Jun 2020 11:50:11: 38000000 INFO @ Tue, 16 Jun 2020 11:50:15: 42000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:50:19: 37000000 INFO @ Tue, 16 Jun 2020 11:50:20: 39000000 INFO @ Tue, 16 Jun 2020 11:50:24: 43000000 INFO @ Tue, 16 Jun 2020 11:50:27: 38000000 INFO @ Tue, 16 Jun 2020 11:50:29: 40000000 INFO @ Tue, 16 Jun 2020 11:50:33: 44000000 INFO @ Tue, 16 Jun 2020 11:50:35: 39000000 INFO @ Tue, 16 Jun 2020 11:50:38: 41000000 INFO @ Tue, 16 Jun 2020 11:50:42: 45000000 INFO @ Tue, 16 Jun 2020 11:50:43: 40000000 INFO @ Tue, 16 Jun 2020 11:50:47: 42000000 INFO @ Tue, 16 Jun 2020 11:50:50: 41000000 INFO @ Tue, 16 Jun 2020 11:50:51: 46000000 INFO @ Tue, 16 Jun 2020 11:50:55: 43000000 INFO @ Tue, 16 Jun 2020 11:50:58: 42000000 INFO @ Tue, 16 Jun 2020 11:50:59: 47000000 INFO @ Tue, 16 Jun 2020 11:51:04: 44000000 INFO @ Tue, 16 Jun 2020 11:51:06: 43000000 INFO @ Tue, 16 Jun 2020 11:51:08: 48000000 INFO @ Tue, 16 Jun 2020 11:51:12: 45000000 INFO @ Tue, 16 Jun 2020 11:51:14: 44000000 INFO @ Tue, 16 Jun 2020 11:51:17: 49000000 INFO @ Tue, 16 Jun 2020 11:51:21: 46000000 INFO @ Tue, 16 Jun 2020 11:51:21: 45000000 INFO @ Tue, 16 Jun 2020 11:51:23: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:51:23: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:51:23: #1 total tags in treatment: 13710011 INFO @ Tue, 16 Jun 2020 11:51:23: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:51:23: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:51:23: #1 tags after filtering in treatment: 11698176 INFO @ Tue, 16 Jun 2020 11:51:23: #1 Redundant rate of treatment: 0.15 INFO @ Tue, 16 Jun 2020 11:51:23: #1 finished! INFO @ Tue, 16 Jun 2020 11:51:23: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:51:23: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:51:24: #2 number of paired peaks: 279 WARNING @ Tue, 16 Jun 2020 11:51:24: Fewer paired peaks (279) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 279 pairs to build model! INFO @ Tue, 16 Jun 2020 11:51:24: start model_add_line... INFO @ Tue, 16 Jun 2020 11:51:24: start X-correlation... INFO @ Tue, 16 Jun 2020 11:51:24: end of X-cor INFO @ Tue, 16 Jun 2020 11:51:24: #2 finished! INFO @ Tue, 16 Jun 2020 11:51:24: #2 predicted fragment length is 208 bps INFO @ Tue, 16 Jun 2020 11:51:24: #2 alternative fragment length(s) may be 208 bps INFO @ Tue, 16 Jun 2020 11:51:24: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619547/SRX6619547.05_model.r WARNING @ Tue, 16 Jun 2020 11:51:24: #2 Since the d (208) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:51:24: #2 You may need to consider one of the other alternative d(s): 208 WARNING @ Tue, 16 Jun 2020 11:51:24: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:51:24: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:51:24: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:51:29: 46000000 INFO @ Tue, 16 Jun 2020 11:51:29: 47000000 INFO @ Tue, 16 Jun 2020 11:51:37: 47000000 INFO @ Tue, 16 Jun 2020 11:51:37: 48000000 INFO @ Tue, 16 Jun 2020 11:51:44: 48000000 INFO @ Tue, 16 Jun 2020 11:51:45: 49000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:51:47: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:51:50: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:51:50: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:51:50: #1 total tags in treatment: 13710011 INFO @ Tue, 16 Jun 2020 11:51:50: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:51:50: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:51:50: #1 tags after filtering in treatment: 11698176 INFO @ Tue, 16 Jun 2020 11:51:50: #1 Redundant rate of treatment: 0.15 INFO @ Tue, 16 Jun 2020 11:51:50: #1 finished! INFO @ Tue, 16 Jun 2020 11:51:50: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:51:50: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:51:51: #2 number of paired peaks: 279 WARNING @ Tue, 16 Jun 2020 11:51:51: Fewer paired peaks (279) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 279 pairs to build model! INFO @ Tue, 16 Jun 2020 11:51:51: start model_add_line... INFO @ Tue, 16 Jun 2020 11:51:51: start X-correlation... INFO @ Tue, 16 Jun 2020 11:51:51: end of X-cor INFO @ Tue, 16 Jun 2020 11:51:51: #2 finished! INFO @ Tue, 16 Jun 2020 11:51:51: #2 predicted fragment length is 208 bps INFO @ Tue, 16 Jun 2020 11:51:51: #2 alternative fragment length(s) may be 208 bps INFO @ Tue, 16 Jun 2020 11:51:51: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619547/SRX6619547.10_model.r WARNING @ Tue, 16 Jun 2020 11:51:51: #2 Since the d (208) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:51:51: #2 You may need to consider one of the other alternative d(s): 208 WARNING @ Tue, 16 Jun 2020 11:51:51: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:51:51: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:51:51: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:51:52: 49000000 INFO @ Tue, 16 Jun 2020 11:51:57: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:51:57: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:51:57: #1 total tags in treatment: 13710011 INFO @ Tue, 16 Jun 2020 11:51:57: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:51:57: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:51:57: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619547/SRX6619547.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:51:57: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619547/SRX6619547.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:51:57: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619547/SRX6619547.05_summits.bed INFO @ Tue, 16 Jun 2020 11:51:57: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (465 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:51:58: #1 tags after filtering in treatment: 11698176 INFO @ Tue, 16 Jun 2020 11:51:58: #1 Redundant rate of treatment: 0.15 INFO @ Tue, 16 Jun 2020 11:51:58: #1 finished! INFO @ Tue, 16 Jun 2020 11:51:58: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:51:58: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:51:58: #2 number of paired peaks: 279 WARNING @ Tue, 16 Jun 2020 11:51:58: Fewer paired peaks (279) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 279 pairs to build model! INFO @ Tue, 16 Jun 2020 11:51:58: start model_add_line... INFO @ Tue, 16 Jun 2020 11:51:58: start X-correlation... INFO @ Tue, 16 Jun 2020 11:51:58: end of X-cor INFO @ Tue, 16 Jun 2020 11:51:58: #2 finished! INFO @ Tue, 16 Jun 2020 11:51:58: #2 predicted fragment length is 208 bps INFO @ Tue, 16 Jun 2020 11:51:58: #2 alternative fragment length(s) may be 208 bps INFO @ Tue, 16 Jun 2020 11:51:58: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619547/SRX6619547.20_model.r WARNING @ Tue, 16 Jun 2020 11:51:58: #2 Since the d (208) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:51:58: #2 You may need to consider one of the other alternative d(s): 208 WARNING @ Tue, 16 Jun 2020 11:51:58: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:51:58: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:51:58: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:52:14: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:52:21: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:52:25: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619547/SRX6619547.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:52:25: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619547/SRX6619547.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:52:25: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619547/SRX6619547.10_summits.bed INFO @ Tue, 16 Jun 2020 11:52:25: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (335 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:52:32: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619547/SRX6619547.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:52:32: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619547/SRX6619547.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:52:32: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619547/SRX6619547.20_summits.bed INFO @ Tue, 16 Jun 2020 11:52:32: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (224 records, 4 fields): 2 millis CompletedMACS2peakCalling