Job ID = 6368845 SRX = SRX6619544 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:36:35 prefetch.2.10.7: 1) Downloading 'SRR9866065'... 2020-06-16T00:36:35 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T01:00:03 prefetch.2.10.7: HTTPS download succeed 2020-06-16T01:00:03 prefetch.2.10.7: 1) 'SRR9866065' was downloaded successfully 2020-06-16T01:00:03 prefetch.2.10.7: 'SRR9866065' has 0 unresolved dependencies Read 53603774 spots for SRR9866065/SRR9866065.sra Written 53603774 spots for SRR9866065/SRR9866065.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:17:39 53603774 reads; of these: 53603774 (100.00%) were paired; of these: 22743497 (42.43%) aligned concordantly 0 times 23869436 (44.53%) aligned concordantly exactly 1 time 6990841 (13.04%) aligned concordantly >1 times ---- 22743497 pairs aligned concordantly 0 times; of these: 14555438 (64.00%) aligned discordantly 1 time ---- 8188059 pairs aligned 0 times concordantly or discordantly; of these: 16376118 mates make up the pairs; of these: 5838555 (35.65%) aligned 0 times 3747298 (22.88%) aligned exactly 1 time 6790265 (41.46%) aligned >1 times 94.55% overall alignment rate Time searching: 02:17:39 Overall time: 02:17:39 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 76 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 7168455 / 45229991 = 0.1585 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 13:12:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619544/SRX6619544.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619544/SRX6619544.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619544/SRX6619544.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619544/SRX6619544.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 13:12:18: #1 read tag files... INFO @ Tue, 16 Jun 2020 13:12:18: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 13:12:27: 1000000 INFO @ Tue, 16 Jun 2020 13:12:36: 2000000 INFO @ Tue, 16 Jun 2020 13:12:45: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 13:12:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619544/SRX6619544.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619544/SRX6619544.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619544/SRX6619544.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619544/SRX6619544.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 13:12:48: #1 read tag files... INFO @ Tue, 16 Jun 2020 13:12:48: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 13:12:56: 4000000 INFO @ Tue, 16 Jun 2020 13:13:00: 1000000 INFO @ Tue, 16 Jun 2020 13:13:07: 5000000 INFO @ Tue, 16 Jun 2020 13:13:11: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 13:13:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619544/SRX6619544.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619544/SRX6619544.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619544/SRX6619544.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619544/SRX6619544.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 13:13:18: #1 read tag files... INFO @ Tue, 16 Jun 2020 13:13:18: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 13:13:18: 6000000 INFO @ Tue, 16 Jun 2020 13:13:23: 3000000 INFO @ Tue, 16 Jun 2020 13:13:31: 1000000 INFO @ Tue, 16 Jun 2020 13:13:31: 7000000 INFO @ Tue, 16 Jun 2020 13:13:35: 4000000 INFO @ Tue, 16 Jun 2020 13:13:43: 2000000 INFO @ Tue, 16 Jun 2020 13:13:43: 8000000 INFO @ Tue, 16 Jun 2020 13:13:46: 5000000 INFO @ Tue, 16 Jun 2020 13:13:55: 9000000 INFO @ Tue, 16 Jun 2020 13:13:55: 3000000 INFO @ Tue, 16 Jun 2020 13:13:58: 6000000 INFO @ Tue, 16 Jun 2020 13:14:06: 10000000 INFO @ Tue, 16 Jun 2020 13:14:07: 4000000 INFO @ Tue, 16 Jun 2020 13:14:10: 7000000 INFO @ Tue, 16 Jun 2020 13:14:18: 11000000 INFO @ Tue, 16 Jun 2020 13:14:19: 5000000 INFO @ Tue, 16 Jun 2020 13:14:22: 8000000 INFO @ Tue, 16 Jun 2020 13:14:30: 12000000 INFO @ Tue, 16 Jun 2020 13:14:30: 6000000 INFO @ Tue, 16 Jun 2020 13:14:34: 9000000 INFO @ Tue, 16 Jun 2020 13:14:41: 13000000 INFO @ Tue, 16 Jun 2020 13:14:42: 7000000 INFO @ Tue, 16 Jun 2020 13:14:46: 10000000 INFO @ Tue, 16 Jun 2020 13:14:53: 14000000 INFO @ Tue, 16 Jun 2020 13:14:54: 8000000 INFO @ Tue, 16 Jun 2020 13:14:58: 11000000 INFO @ Tue, 16 Jun 2020 13:15:04: 15000000 INFO @ Tue, 16 Jun 2020 13:15:05: 9000000 INFO @ Tue, 16 Jun 2020 13:15:10: 12000000 INFO @ Tue, 16 Jun 2020 13:15:16: 16000000 INFO @ Tue, 16 Jun 2020 13:15:17: 10000000 INFO @ Tue, 16 Jun 2020 13:15:21: 13000000 INFO @ Tue, 16 Jun 2020 13:15:27: 17000000 INFO @ Tue, 16 Jun 2020 13:15:29: 11000000 INFO @ Tue, 16 Jun 2020 13:15:33: 14000000 INFO @ Tue, 16 Jun 2020 13:15:39: 18000000 INFO @ Tue, 16 Jun 2020 13:15:40: 12000000 INFO @ Tue, 16 Jun 2020 13:15:45: 15000000 INFO @ Tue, 16 Jun 2020 13:15:50: 19000000 INFO @ Tue, 16 Jun 2020 13:15:52: 13000000 INFO @ Tue, 16 Jun 2020 13:15:56: 16000000 INFO @ Tue, 16 Jun 2020 13:16:02: 20000000 INFO @ Tue, 16 Jun 2020 13:16:03: 14000000 INFO @ Tue, 16 Jun 2020 13:16:08: 17000000 INFO @ Tue, 16 Jun 2020 13:16:13: 21000000 INFO @ Tue, 16 Jun 2020 13:16:15: 15000000 INFO @ Tue, 16 Jun 2020 13:16:19: 18000000 INFO @ Tue, 16 Jun 2020 13:16:24: 22000000 INFO @ Tue, 16 Jun 2020 13:16:26: 16000000 INFO @ Tue, 16 Jun 2020 13:16:31: 19000000 INFO @ Tue, 16 Jun 2020 13:16:36: 23000000 INFO @ Tue, 16 Jun 2020 13:16:37: 17000000 INFO @ Tue, 16 Jun 2020 13:16:42: 20000000 INFO @ Tue, 16 Jun 2020 13:16:47: 24000000 INFO @ Tue, 16 Jun 2020 13:16:49: 18000000 INFO @ Tue, 16 Jun 2020 13:16:54: 21000000 INFO @ Tue, 16 Jun 2020 13:16:59: 25000000 INFO @ Tue, 16 Jun 2020 13:17:00: 19000000 INFO @ Tue, 16 Jun 2020 13:17:05: 22000000 INFO @ Tue, 16 Jun 2020 13:17:10: 26000000 INFO @ Tue, 16 Jun 2020 13:17:12: 20000000 INFO @ Tue, 16 Jun 2020 13:17:17: 23000000 INFO @ Tue, 16 Jun 2020 13:17:22: 27000000 INFO @ Tue, 16 Jun 2020 13:17:23: 21000000 INFO @ Tue, 16 Jun 2020 13:17:29: 24000000 INFO @ Tue, 16 Jun 2020 13:17:33: 28000000 INFO @ Tue, 16 Jun 2020 13:17:35: 22000000 INFO @ Tue, 16 Jun 2020 13:17:41: 25000000 INFO @ Tue, 16 Jun 2020 13:17:45: 29000000 INFO @ Tue, 16 Jun 2020 13:17:46: 23000000 INFO @ Tue, 16 Jun 2020 13:17:53: 26000000 INFO @ Tue, 16 Jun 2020 13:17:56: 30000000 INFO @ Tue, 16 Jun 2020 13:17:58: 24000000 INFO @ Tue, 16 Jun 2020 13:18:05: 27000000 INFO @ Tue, 16 Jun 2020 13:18:08: 31000000 INFO @ Tue, 16 Jun 2020 13:18:10: 25000000 INFO @ Tue, 16 Jun 2020 13:18:17: 28000000 INFO @ Tue, 16 Jun 2020 13:18:20: 32000000 INFO @ Tue, 16 Jun 2020 13:18:21: 26000000 INFO @ Tue, 16 Jun 2020 13:18:29: 29000000 INFO @ Tue, 16 Jun 2020 13:18:31: 33000000 INFO @ Tue, 16 Jun 2020 13:18:33: 27000000 INFO @ Tue, 16 Jun 2020 13:18:41: 30000000 INFO @ Tue, 16 Jun 2020 13:18:43: 34000000 INFO @ Tue, 16 Jun 2020 13:18:44: 28000000 INFO @ Tue, 16 Jun 2020 13:18:53: 31000000 INFO @ Tue, 16 Jun 2020 13:18:53: 35000000 INFO @ Tue, 16 Jun 2020 13:18:55: 29000000 INFO @ Tue, 16 Jun 2020 13:19:05: 36000000 INFO @ Tue, 16 Jun 2020 13:19:05: 32000000 INFO @ Tue, 16 Jun 2020 13:19:07: 30000000 INFO @ Tue, 16 Jun 2020 13:19:16: 37000000 INFO @ Tue, 16 Jun 2020 13:19:17: 33000000 INFO @ Tue, 16 Jun 2020 13:19:18: 31000000 INFO @ Tue, 16 Jun 2020 13:19:27: 38000000 INFO @ Tue, 16 Jun 2020 13:19:28: 34000000 INFO @ Tue, 16 Jun 2020 13:19:29: 32000000 INFO @ Tue, 16 Jun 2020 13:19:38: 39000000 INFO @ Tue, 16 Jun 2020 13:19:40: 35000000 INFO @ Tue, 16 Jun 2020 13:19:41: 33000000 INFO @ Tue, 16 Jun 2020 13:19:50: 40000000 INFO @ Tue, 16 Jun 2020 13:19:51: 36000000 INFO @ Tue, 16 Jun 2020 13:19:52: 34000000 INFO @ Tue, 16 Jun 2020 13:20:01: 41000000 INFO @ Tue, 16 Jun 2020 13:20:03: 35000000 INFO @ Tue, 16 Jun 2020 13:20:03: 37000000 INFO @ Tue, 16 Jun 2020 13:20:12: 42000000 INFO @ Tue, 16 Jun 2020 13:20:14: 36000000 INFO @ Tue, 16 Jun 2020 13:20:15: 38000000 INFO @ Tue, 16 Jun 2020 13:20:23: 43000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 13:20:25: 37000000 INFO @ Tue, 16 Jun 2020 13:20:27: 39000000 INFO @ Tue, 16 Jun 2020 13:20:34: 44000000 INFO @ Tue, 16 Jun 2020 13:20:37: 38000000 INFO @ Tue, 16 Jun 2020 13:20:39: 40000000 INFO @ Tue, 16 Jun 2020 13:20:46: 45000000 INFO @ Tue, 16 Jun 2020 13:20:49: 39000000 INFO @ Tue, 16 Jun 2020 13:20:49: 41000000 INFO @ Tue, 16 Jun 2020 13:20:57: 46000000 INFO @ Tue, 16 Jun 2020 13:20:59: 42000000 INFO @ Tue, 16 Jun 2020 13:21:00: 40000000 INFO @ Tue, 16 Jun 2020 13:21:08: 47000000 INFO @ Tue, 16 Jun 2020 13:21:10: 43000000 INFO @ Tue, 16 Jun 2020 13:21:12: 41000000 INFO @ Tue, 16 Jun 2020 13:21:19: 48000000 INFO @ Tue, 16 Jun 2020 13:21:21: 44000000 INFO @ Tue, 16 Jun 2020 13:21:24: 42000000 INFO @ Tue, 16 Jun 2020 13:21:30: 49000000 INFO @ Tue, 16 Jun 2020 13:21:32: 45000000 INFO @ Tue, 16 Jun 2020 13:21:36: 43000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 13:21:41: 50000000 INFO @ Tue, 16 Jun 2020 13:21:44: 46000000 INFO @ Tue, 16 Jun 2020 13:21:48: 44000000 INFO @ Tue, 16 Jun 2020 13:21:52: 51000000 INFO @ Tue, 16 Jun 2020 13:21:55: 47000000 INFO @ Tue, 16 Jun 2020 13:21:59: 45000000 INFO @ Tue, 16 Jun 2020 13:22:03: 52000000 INFO @ Tue, 16 Jun 2020 13:22:07: 48000000 INFO @ Tue, 16 Jun 2020 13:22:10: 46000000 INFO @ Tue, 16 Jun 2020 13:22:14: 53000000 INFO @ Tue, 16 Jun 2020 13:22:19: 49000000 INFO @ Tue, 16 Jun 2020 13:22:22: 47000000 INFO @ Tue, 16 Jun 2020 13:22:25: 54000000 INFO @ Tue, 16 Jun 2020 13:22:30: 50000000 INFO @ Tue, 16 Jun 2020 13:22:33: 48000000 INFO @ Tue, 16 Jun 2020 13:22:36: 55000000 INFO @ Tue, 16 Jun 2020 13:22:42: 51000000 INFO @ Tue, 16 Jun 2020 13:22:44: 49000000 INFO @ Tue, 16 Jun 2020 13:22:47: 56000000 INFO @ Tue, 16 Jun 2020 13:22:54: 52000000 INFO @ Tue, 16 Jun 2020 13:22:56: 50000000 INFO @ Tue, 16 Jun 2020 13:22:58: 57000000 INFO @ Tue, 16 Jun 2020 13:23:05: 53000000 INFO @ Tue, 16 Jun 2020 13:23:07: 51000000 INFO @ Tue, 16 Jun 2020 13:23:09: 58000000 INFO @ Tue, 16 Jun 2020 13:23:17: 54000000 INFO @ Tue, 16 Jun 2020 13:23:18: 52000000 INFO @ Tue, 16 Jun 2020 13:23:20: 59000000 INFO @ Tue, 16 Jun 2020 13:23:29: 55000000 INFO @ Tue, 16 Jun 2020 13:23:30: 53000000 INFO @ Tue, 16 Jun 2020 13:23:31: 60000000 INFO @ Tue, 16 Jun 2020 13:23:40: 56000000 INFO @ Tue, 16 Jun 2020 13:23:41: 54000000 INFO @ Tue, 16 Jun 2020 13:23:42: 61000000 INFO @ Tue, 16 Jun 2020 13:23:51: 57000000 INFO @ Tue, 16 Jun 2020 13:23:52: 55000000 INFO @ Tue, 16 Jun 2020 13:23:53: 62000000 INFO @ Tue, 16 Jun 2020 13:24:03: 56000000 INFO @ Tue, 16 Jun 2020 13:24:03: 58000000 INFO @ Tue, 16 Jun 2020 13:24:04: 63000000 INFO @ Tue, 16 Jun 2020 13:24:14: 57000000 INFO @ Tue, 16 Jun 2020 13:24:15: 59000000 INFO @ Tue, 16 Jun 2020 13:24:15: 64000000 INFO @ Tue, 16 Jun 2020 13:24:26: 58000000 INFO @ Tue, 16 Jun 2020 13:24:26: 65000000 INFO @ Tue, 16 Jun 2020 13:24:26: 60000000 INFO @ Tue, 16 Jun 2020 13:24:36: 66000000 INFO @ Tue, 16 Jun 2020 13:24:37: 59000000 INFO @ Tue, 16 Jun 2020 13:24:38: 61000000 INFO @ Tue, 16 Jun 2020 13:24:47: 67000000 INFO @ Tue, 16 Jun 2020 13:24:47: 60000000 INFO @ Tue, 16 Jun 2020 13:24:49: 62000000 INFO @ Tue, 16 Jun 2020 13:24:58: 68000000 INFO @ Tue, 16 Jun 2020 13:24:58: 61000000 INFO @ Tue, 16 Jun 2020 13:25:01: 63000000 INFO @ Tue, 16 Jun 2020 13:25:08: 69000000 INFO @ Tue, 16 Jun 2020 13:25:09: 62000000 INFO @ Tue, 16 Jun 2020 13:25:12: 64000000 INFO @ Tue, 16 Jun 2020 13:25:19: 70000000 INFO @ Tue, 16 Jun 2020 13:25:20: 63000000 INFO @ Tue, 16 Jun 2020 13:25:23: 65000000 INFO @ Tue, 16 Jun 2020 13:25:29: 71000000 INFO @ Tue, 16 Jun 2020 13:25:31: 64000000 INFO @ Tue, 16 Jun 2020 13:25:34: 66000000 INFO @ Tue, 16 Jun 2020 13:25:40: 72000000 INFO @ Tue, 16 Jun 2020 13:25:41: 65000000 INFO @ Tue, 16 Jun 2020 13:25:45: 67000000 INFO @ Tue, 16 Jun 2020 13:25:50: 73000000 INFO @ Tue, 16 Jun 2020 13:25:52: 66000000 INFO @ Tue, 16 Jun 2020 13:25:57: 68000000 INFO @ Tue, 16 Jun 2020 13:26:00: 74000000 INFO @ Tue, 16 Jun 2020 13:26:03: 67000000 INFO @ Tue, 16 Jun 2020 13:26:08: 69000000 INFO @ Tue, 16 Jun 2020 13:26:11: 75000000 INFO @ Tue, 16 Jun 2020 13:26:13: 68000000 INFO @ Tue, 16 Jun 2020 13:26:19: 70000000 INFO @ Tue, 16 Jun 2020 13:26:22: 76000000 INFO @ Tue, 16 Jun 2020 13:26:24: 69000000 INFO @ Tue, 16 Jun 2020 13:26:31: 71000000 INFO @ Tue, 16 Jun 2020 13:26:33: 77000000 INFO @ Tue, 16 Jun 2020 13:26:35: 70000000 INFO @ Tue, 16 Jun 2020 13:26:42: 72000000 INFO @ Tue, 16 Jun 2020 13:26:43: 78000000 INFO @ Tue, 16 Jun 2020 13:26:46: 71000000 INFO @ Tue, 16 Jun 2020 13:26:53: 73000000 INFO @ Tue, 16 Jun 2020 13:26:54: 79000000 INFO @ Tue, 16 Jun 2020 13:26:57: 72000000 INFO @ Tue, 16 Jun 2020 13:27:04: 74000000 INFO @ Tue, 16 Jun 2020 13:27:05: 80000000 INFO @ Tue, 16 Jun 2020 13:27:08: 73000000 INFO @ Tue, 16 Jun 2020 13:27:15: 75000000 INFO @ Tue, 16 Jun 2020 13:27:15: 81000000 INFO @ Tue, 16 Jun 2020 13:27:18: 74000000 INFO @ Tue, 16 Jun 2020 13:27:26: 82000000 INFO @ Tue, 16 Jun 2020 13:27:27: 76000000 INFO @ Tue, 16 Jun 2020 13:27:29: 75000000 INFO @ Tue, 16 Jun 2020 13:27:37: 83000000 INFO @ Tue, 16 Jun 2020 13:27:38: 77000000 INFO @ Tue, 16 Jun 2020 13:27:40: 76000000 INFO @ Tue, 16 Jun 2020 13:27:47: 84000000 INFO @ Tue, 16 Jun 2020 13:27:50: 78000000 INFO @ Tue, 16 Jun 2020 13:27:51: 77000000 INFO @ Tue, 16 Jun 2020 13:27:58: 85000000 INFO @ Tue, 16 Jun 2020 13:28:02: 79000000 INFO @ Tue, 16 Jun 2020 13:28:03: 78000000 INFO @ Tue, 16 Jun 2020 13:28:09: 86000000 INFO @ Tue, 16 Jun 2020 13:28:13: 80000000 INFO @ Tue, 16 Jun 2020 13:28:13: 79000000 INFO @ Tue, 16 Jun 2020 13:28:19: 87000000 INFO @ Tue, 16 Jun 2020 13:28:20: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 13:28:20: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 13:28:20: #1 total tags in treatment: 25957963 INFO @ Tue, 16 Jun 2020 13:28:20: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 13:28:20: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 13:28:20: #1 tags after filtering in treatment: 19037715 INFO @ Tue, 16 Jun 2020 13:28:20: #1 Redundant rate of treatment: 0.27 INFO @ Tue, 16 Jun 2020 13:28:20: #1 finished! INFO @ Tue, 16 Jun 2020 13:28:20: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 13:28:20: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 13:28:22: #2 number of paired peaks: 1704 INFO @ Tue, 16 Jun 2020 13:28:22: start model_add_line... INFO @ Tue, 16 Jun 2020 13:28:22: start X-correlation... INFO @ Tue, 16 Jun 2020 13:28:22: end of X-cor INFO @ Tue, 16 Jun 2020 13:28:22: #2 finished! INFO @ Tue, 16 Jun 2020 13:28:22: #2 predicted fragment length is 253 bps INFO @ Tue, 16 Jun 2020 13:28:22: #2 alternative fragment length(s) may be 4,253 bps INFO @ Tue, 16 Jun 2020 13:28:22: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619544/SRX6619544.05_model.r WARNING @ Tue, 16 Jun 2020 13:28:22: #2 Since the d (253) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 13:28:22: #2 You may need to consider one of the other alternative d(s): 4,253 WARNING @ Tue, 16 Jun 2020 13:28:22: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 13:28:22: #3 Call peaks... INFO @ Tue, 16 Jun 2020 13:28:22: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 13:28:24: 80000000 INFO @ Tue, 16 Jun 2020 13:28:24: 81000000 INFO @ Tue, 16 Jun 2020 13:28:34: 81000000 INFO @ Tue, 16 Jun 2020 13:28:35: 82000000 INFO @ Tue, 16 Jun 2020 13:28:45: 82000000 INFO @ Tue, 16 Jun 2020 13:28:47: 83000000 INFO @ Tue, 16 Jun 2020 13:28:57: 83000000 INFO @ Tue, 16 Jun 2020 13:28:59: 84000000 INFO @ Tue, 16 Jun 2020 13:29:07: 84000000 INFO @ Tue, 16 Jun 2020 13:29:10: 85000000 INFO @ Tue, 16 Jun 2020 13:29:18: 85000000 INFO @ Tue, 16 Jun 2020 13:29:22: 86000000 INFO @ Tue, 16 Jun 2020 13:29:24: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 13:29:29: 86000000 INFO @ Tue, 16 Jun 2020 13:29:33: 87000000 INFO @ Tue, 16 Jun 2020 13:29:33: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 13:29:33: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 13:29:33: #1 total tags in treatment: 25957963 INFO @ Tue, 16 Jun 2020 13:29:33: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 13:29:33: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 13:29:34: #1 tags after filtering in treatment: 19037715 INFO @ Tue, 16 Jun 2020 13:29:34: #1 Redundant rate of treatment: 0.27 INFO @ Tue, 16 Jun 2020 13:29:34: #1 finished! INFO @ Tue, 16 Jun 2020 13:29:34: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 13:29:34: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 13:29:35: #2 number of paired peaks: 1704 INFO @ Tue, 16 Jun 2020 13:29:35: start model_add_line... INFO @ Tue, 16 Jun 2020 13:29:36: start X-correlation... INFO @ Tue, 16 Jun 2020 13:29:36: end of X-cor INFO @ Tue, 16 Jun 2020 13:29:36: #2 finished! INFO @ Tue, 16 Jun 2020 13:29:36: #2 predicted fragment length is 253 bps INFO @ Tue, 16 Jun 2020 13:29:36: #2 alternative fragment length(s) may be 4,253 bps INFO @ Tue, 16 Jun 2020 13:29:36: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619544/SRX6619544.10_model.r WARNING @ Tue, 16 Jun 2020 13:29:36: #2 Since the d (253) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 13:29:36: #2 You may need to consider one of the other alternative d(s): 4,253 WARNING @ Tue, 16 Jun 2020 13:29:36: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 13:29:36: #3 Call peaks... INFO @ Tue, 16 Jun 2020 13:29:36: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 13:29:39: 87000000 INFO @ Tue, 16 Jun 2020 13:29:39: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 13:29:39: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 13:29:39: #1 total tags in treatment: 25957963 INFO @ Tue, 16 Jun 2020 13:29:39: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 13:29:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 13:29:40: #1 tags after filtering in treatment: 19037715 INFO @ Tue, 16 Jun 2020 13:29:40: #1 Redundant rate of treatment: 0.27 INFO @ Tue, 16 Jun 2020 13:29:40: #1 finished! INFO @ Tue, 16 Jun 2020 13:29:40: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 13:29:40: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 13:29:41: #2 number of paired peaks: 1704 INFO @ Tue, 16 Jun 2020 13:29:41: start model_add_line... INFO @ Tue, 16 Jun 2020 13:29:41: start X-correlation... INFO @ Tue, 16 Jun 2020 13:29:41: end of X-cor INFO @ Tue, 16 Jun 2020 13:29:41: #2 finished! INFO @ Tue, 16 Jun 2020 13:29:41: #2 predicted fragment length is 253 bps INFO @ Tue, 16 Jun 2020 13:29:41: #2 alternative fragment length(s) may be 4,253 bps INFO @ Tue, 16 Jun 2020 13:29:41: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619544/SRX6619544.20_model.r WARNING @ Tue, 16 Jun 2020 13:29:41: #2 Since the d (253) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 13:29:41: #2 You may need to consider one of the other alternative d(s): 4,253 WARNING @ Tue, 16 Jun 2020 13:29:41: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 13:29:41: #3 Call peaks... INFO @ Tue, 16 Jun 2020 13:29:41: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 13:29:49: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619544/SRX6619544.05_peaks.xls INFO @ Tue, 16 Jun 2020 13:29:49: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619544/SRX6619544.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 13:29:49: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619544/SRX6619544.05_summits.bed INFO @ Tue, 16 Jun 2020 13:29:49: Done! pass1 - making usageList (6 chroms): 2 millis pass2 - checking and writing primary data (16838 records, 4 fields): 17 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 13:30:35: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 13:30:42: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 13:30:58: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619544/SRX6619544.10_peaks.xls INFO @ Tue, 16 Jun 2020 13:30:58: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619544/SRX6619544.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 13:30:58: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619544/SRX6619544.10_summits.bed INFO @ Tue, 16 Jun 2020 13:30:58: Done! pass1 - making usageList (6 chroms): 2 millis pass2 - checking and writing primary data (10059 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 13:31:06: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619544/SRX6619544.20_peaks.xls INFO @ Tue, 16 Jun 2020 13:31:06: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619544/SRX6619544.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 13:31:06: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619544/SRX6619544.20_summits.bed INFO @ Tue, 16 Jun 2020 13:31:06: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (4545 records, 4 fields): 6 millis CompletedMACS2peakCalling