Job ID = 6368843 SRX = SRX6619542 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:26:19 prefetch.2.10.7: 1) Downloading 'SRR9866067'... 2020-06-16T00:26:19 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:43:30 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:43:30 prefetch.2.10.7: 1) 'SRR9866067' was downloaded successfully 2020-06-16T00:43:30 prefetch.2.10.7: 'SRR9866067' has 0 unresolved dependencies Read 41467644 spots for SRR9866067/SRR9866067.sra Written 41467644 spots for SRR9866067/SRR9866067.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:39:22 41467644 reads; of these: 41467644 (100.00%) were paired; of these: 13914225 (33.55%) aligned concordantly 0 times 20906611 (50.42%) aligned concordantly exactly 1 time 6646808 (16.03%) aligned concordantly >1 times ---- 13914225 pairs aligned concordantly 0 times; of these: 7616445 (54.74%) aligned discordantly 1 time ---- 6297780 pairs aligned 0 times concordantly or discordantly; of these: 12595560 mates make up the pairs; of these: 7563377 (60.05%) aligned 0 times 1498702 (11.90%) aligned exactly 1 time 3533481 (28.05%) aligned >1 times 90.88% overall alignment rate Time searching: 01:39:22 Overall time: 01:39:22 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 56 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 6168731 / 35004391 = 0.1762 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:57:14: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619542/SRX6619542.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619542/SRX6619542.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619542/SRX6619542.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619542/SRX6619542.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:57:14: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:57:14: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:57:24: 1000000 INFO @ Tue, 16 Jun 2020 11:57:34: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:57:43: 3000000 INFO @ Tue, 16 Jun 2020 11:57:44: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619542/SRX6619542.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619542/SRX6619542.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619542/SRX6619542.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619542/SRX6619542.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:57:44: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:57:44: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:57:55: 4000000 INFO @ Tue, 16 Jun 2020 11:57:56: 1000000 INFO @ Tue, 16 Jun 2020 11:58:07: 2000000 INFO @ Tue, 16 Jun 2020 11:58:07: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:58:14: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619542/SRX6619542.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619542/SRX6619542.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619542/SRX6619542.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619542/SRX6619542.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:58:14: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:58:14: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:58:18: 3000000 INFO @ Tue, 16 Jun 2020 11:58:20: 6000000 INFO @ Tue, 16 Jun 2020 11:58:26: 1000000 INFO @ Tue, 16 Jun 2020 11:58:30: 4000000 INFO @ Tue, 16 Jun 2020 11:58:33: 7000000 INFO @ Tue, 16 Jun 2020 11:58:37: 2000000 INFO @ Tue, 16 Jun 2020 11:58:43: 5000000 INFO @ Tue, 16 Jun 2020 11:58:46: 8000000 INFO @ Tue, 16 Jun 2020 11:58:48: 3000000 INFO @ Tue, 16 Jun 2020 11:58:56: 6000000 INFO @ Tue, 16 Jun 2020 11:58:58: 9000000 INFO @ Tue, 16 Jun 2020 11:58:59: 4000000 INFO @ Tue, 16 Jun 2020 11:59:09: 7000000 INFO @ Tue, 16 Jun 2020 11:59:11: 10000000 INFO @ Tue, 16 Jun 2020 11:59:11: 5000000 INFO @ Tue, 16 Jun 2020 11:59:21: 8000000 INFO @ Tue, 16 Jun 2020 11:59:24: 11000000 INFO @ Tue, 16 Jun 2020 11:59:25: 6000000 INFO @ Tue, 16 Jun 2020 11:59:34: 9000000 INFO @ Tue, 16 Jun 2020 11:59:36: 12000000 INFO @ Tue, 16 Jun 2020 11:59:37: 7000000 INFO @ Tue, 16 Jun 2020 11:59:47: 10000000 INFO @ Tue, 16 Jun 2020 11:59:49: 13000000 INFO @ Tue, 16 Jun 2020 11:59:49: 8000000 INFO @ Tue, 16 Jun 2020 11:59:59: 11000000 INFO @ Tue, 16 Jun 2020 12:00:02: 9000000 INFO @ Tue, 16 Jun 2020 12:00:02: 14000000 INFO @ Tue, 16 Jun 2020 12:00:12: 12000000 INFO @ Tue, 16 Jun 2020 12:00:14: 10000000 INFO @ Tue, 16 Jun 2020 12:00:14: 15000000 INFO @ Tue, 16 Jun 2020 12:00:25: 13000000 INFO @ Tue, 16 Jun 2020 12:00:26: 11000000 INFO @ Tue, 16 Jun 2020 12:00:27: 16000000 INFO @ Tue, 16 Jun 2020 12:00:38: 14000000 INFO @ Tue, 16 Jun 2020 12:00:38: 12000000 INFO @ Tue, 16 Jun 2020 12:00:40: 17000000 INFO @ Tue, 16 Jun 2020 12:00:50: 15000000 INFO @ Tue, 16 Jun 2020 12:00:51: 13000000 INFO @ Tue, 16 Jun 2020 12:00:53: 18000000 INFO @ Tue, 16 Jun 2020 12:01:03: 16000000 INFO @ Tue, 16 Jun 2020 12:01:03: 14000000 INFO @ Tue, 16 Jun 2020 12:01:06: 19000000 INFO @ Tue, 16 Jun 2020 12:01:15: 15000000 INFO @ Tue, 16 Jun 2020 12:01:16: 17000000 INFO @ Tue, 16 Jun 2020 12:01:18: 20000000 INFO @ Tue, 16 Jun 2020 12:01:28: 16000000 INFO @ Tue, 16 Jun 2020 12:01:29: 18000000 INFO @ Tue, 16 Jun 2020 12:01:31: 21000000 INFO @ Tue, 16 Jun 2020 12:01:40: 17000000 INFO @ Tue, 16 Jun 2020 12:01:41: 19000000 INFO @ Tue, 16 Jun 2020 12:01:44: 22000000 INFO @ Tue, 16 Jun 2020 12:01:52: 18000000 INFO @ Tue, 16 Jun 2020 12:01:54: 20000000 INFO @ Tue, 16 Jun 2020 12:01:57: 23000000 INFO @ Tue, 16 Jun 2020 12:02:05: 19000000 INFO @ Tue, 16 Jun 2020 12:02:07: 21000000 INFO @ Tue, 16 Jun 2020 12:02:09: 24000000 INFO @ Tue, 16 Jun 2020 12:02:17: 20000000 INFO @ Tue, 16 Jun 2020 12:02:20: 22000000 INFO @ Tue, 16 Jun 2020 12:02:22: 25000000 INFO @ Tue, 16 Jun 2020 12:02:29: 21000000 INFO @ Tue, 16 Jun 2020 12:02:32: 23000000 INFO @ Tue, 16 Jun 2020 12:02:35: 26000000 INFO @ Tue, 16 Jun 2020 12:02:42: 22000000 INFO @ Tue, 16 Jun 2020 12:02:45: 24000000 INFO @ Tue, 16 Jun 2020 12:02:47: 27000000 INFO @ Tue, 16 Jun 2020 12:02:54: 23000000 INFO @ Tue, 16 Jun 2020 12:02:57: 25000000 INFO @ Tue, 16 Jun 2020 12:03:00: 28000000 INFO @ Tue, 16 Jun 2020 12:03:06: 24000000 INFO @ Tue, 16 Jun 2020 12:03:10: 26000000 INFO @ Tue, 16 Jun 2020 12:03:13: 29000000 INFO @ Tue, 16 Jun 2020 12:03:19: 25000000 INFO @ Tue, 16 Jun 2020 12:03:23: 27000000 INFO @ Tue, 16 Jun 2020 12:03:25: 30000000 INFO @ Tue, 16 Jun 2020 12:03:31: 26000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 12:03:36: 28000000 INFO @ Tue, 16 Jun 2020 12:03:38: 31000000 INFO @ Tue, 16 Jun 2020 12:03:43: 27000000 INFO @ Tue, 16 Jun 2020 12:03:48: 29000000 INFO @ Tue, 16 Jun 2020 12:03:51: 32000000 INFO @ Tue, 16 Jun 2020 12:03:56: 28000000 INFO @ Tue, 16 Jun 2020 12:04:01: 30000000 INFO @ Tue, 16 Jun 2020 12:04:04: 33000000 INFO @ Tue, 16 Jun 2020 12:04:08: 29000000 INFO @ Tue, 16 Jun 2020 12:04:14: 31000000 INFO @ Tue, 16 Jun 2020 12:04:16: 34000000 INFO @ Tue, 16 Jun 2020 12:04:20: 30000000 INFO @ Tue, 16 Jun 2020 12:04:26: 32000000 INFO @ Tue, 16 Jun 2020 12:04:29: 35000000 INFO @ Tue, 16 Jun 2020 12:04:32: 31000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 12:04:39: 33000000 INFO @ Tue, 16 Jun 2020 12:04:42: 36000000 INFO @ Tue, 16 Jun 2020 12:04:45: 32000000 INFO @ Tue, 16 Jun 2020 12:04:52: 34000000 INFO @ Tue, 16 Jun 2020 12:04:55: 37000000 INFO @ Tue, 16 Jun 2020 12:04:57: 33000000 INFO @ Tue, 16 Jun 2020 12:05:06: 35000000 INFO @ Tue, 16 Jun 2020 12:05:08: 38000000 INFO @ Tue, 16 Jun 2020 12:05:10: 34000000 INFO @ Tue, 16 Jun 2020 12:05:19: 36000000 INFO @ Tue, 16 Jun 2020 12:05:22: 39000000 INFO @ Tue, 16 Jun 2020 12:05:23: 35000000 INFO @ Tue, 16 Jun 2020 12:05:33: 37000000 INFO @ Tue, 16 Jun 2020 12:05:35: 40000000 INFO @ Tue, 16 Jun 2020 12:05:36: 36000000 INFO @ Tue, 16 Jun 2020 12:05:46: 38000000 INFO @ Tue, 16 Jun 2020 12:05:49: 41000000 INFO @ Tue, 16 Jun 2020 12:05:49: 37000000 INFO @ Tue, 16 Jun 2020 12:06:00: 39000000 INFO @ Tue, 16 Jun 2020 12:06:02: 38000000 INFO @ Tue, 16 Jun 2020 12:06:02: 42000000 INFO @ Tue, 16 Jun 2020 12:06:13: 40000000 INFO @ Tue, 16 Jun 2020 12:06:14: 39000000 INFO @ Tue, 16 Jun 2020 12:06:16: 43000000 INFO @ Tue, 16 Jun 2020 12:06:26: 41000000 INFO @ Tue, 16 Jun 2020 12:06:27: 40000000 INFO @ Tue, 16 Jun 2020 12:06:29: 44000000 INFO @ Tue, 16 Jun 2020 12:06:39: 41000000 INFO @ Tue, 16 Jun 2020 12:06:40: 42000000 INFO @ Tue, 16 Jun 2020 12:06:42: 45000000 INFO @ Tue, 16 Jun 2020 12:06:52: 42000000 INFO @ Tue, 16 Jun 2020 12:06:52: 43000000 INFO @ Tue, 16 Jun 2020 12:06:55: 46000000 INFO @ Tue, 16 Jun 2020 12:07:04: 43000000 INFO @ Tue, 16 Jun 2020 12:07:05: 44000000 INFO @ Tue, 16 Jun 2020 12:07:08: 47000000 INFO @ Tue, 16 Jun 2020 12:07:17: 44000000 INFO @ Tue, 16 Jun 2020 12:07:18: 45000000 INFO @ Tue, 16 Jun 2020 12:07:20: 48000000 INFO @ Tue, 16 Jun 2020 12:07:29: 45000000 INFO @ Tue, 16 Jun 2020 12:07:30: 46000000 INFO @ Tue, 16 Jun 2020 12:07:33: 49000000 INFO @ Tue, 16 Jun 2020 12:07:41: 46000000 INFO @ Tue, 16 Jun 2020 12:07:43: 47000000 INFO @ Tue, 16 Jun 2020 12:07:45: 50000000 INFO @ Tue, 16 Jun 2020 12:07:53: 47000000 INFO @ Tue, 16 Jun 2020 12:07:55: 48000000 INFO @ Tue, 16 Jun 2020 12:07:58: 51000000 INFO @ Tue, 16 Jun 2020 12:08:05: 48000000 INFO @ Tue, 16 Jun 2020 12:08:08: 49000000 INFO @ Tue, 16 Jun 2020 12:08:10: 52000000 INFO @ Tue, 16 Jun 2020 12:08:17: 49000000 INFO @ Tue, 16 Jun 2020 12:08:20: 50000000 INFO @ Tue, 16 Jun 2020 12:08:22: 53000000 INFO @ Tue, 16 Jun 2020 12:08:29: 50000000 INFO @ Tue, 16 Jun 2020 12:08:33: 51000000 INFO @ Tue, 16 Jun 2020 12:08:35: 54000000 INFO @ Tue, 16 Jun 2020 12:08:41: 51000000 INFO @ Tue, 16 Jun 2020 12:08:45: 52000000 INFO @ Tue, 16 Jun 2020 12:08:48: 55000000 INFO @ Tue, 16 Jun 2020 12:08:54: 52000000 INFO @ Tue, 16 Jun 2020 12:08:58: 53000000 INFO @ Tue, 16 Jun 2020 12:09:00: 56000000 INFO @ Tue, 16 Jun 2020 12:09:06: 53000000 INFO @ Tue, 16 Jun 2020 12:09:10: 54000000 INFO @ Tue, 16 Jun 2020 12:09:13: 57000000 INFO @ Tue, 16 Jun 2020 12:09:18: 54000000 INFO @ Tue, 16 Jun 2020 12:09:23: 55000000 INFO @ Tue, 16 Jun 2020 12:09:25: 58000000 INFO @ Tue, 16 Jun 2020 12:09:30: 55000000 INFO @ Tue, 16 Jun 2020 12:09:35: 56000000 INFO @ Tue, 16 Jun 2020 12:09:38: 59000000 INFO @ Tue, 16 Jun 2020 12:09:42: 56000000 INFO @ Tue, 16 Jun 2020 12:09:48: 57000000 INFO @ Tue, 16 Jun 2020 12:09:50: 60000000 INFO @ Tue, 16 Jun 2020 12:09:54: 57000000 INFO @ Tue, 16 Jun 2020 12:10:00: 58000000 INFO @ Tue, 16 Jun 2020 12:10:02: 61000000 INFO @ Tue, 16 Jun 2020 12:10:06: 58000000 INFO @ Tue, 16 Jun 2020 12:10:13: 59000000 INFO @ Tue, 16 Jun 2020 12:10:15: 62000000 INFO @ Tue, 16 Jun 2020 12:10:19: 59000000 INFO @ Tue, 16 Jun 2020 12:10:25: 60000000 INFO @ Tue, 16 Jun 2020 12:10:28: 63000000 INFO @ Tue, 16 Jun 2020 12:10:28: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:10:28: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:10:28: #1 total tags in treatment: 22675086 INFO @ Tue, 16 Jun 2020 12:10:28: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:10:28: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:10:29: #1 tags after filtering in treatment: 17316912 INFO @ Tue, 16 Jun 2020 12:10:29: #1 Redundant rate of treatment: 0.24 INFO @ Tue, 16 Jun 2020 12:10:29: #1 finished! INFO @ Tue, 16 Jun 2020 12:10:29: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:10:29: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:10:30: #2 number of paired peaks: 2024 INFO @ Tue, 16 Jun 2020 12:10:30: start model_add_line... INFO @ Tue, 16 Jun 2020 12:10:30: start X-correlation... INFO @ Tue, 16 Jun 2020 12:10:30: end of X-cor INFO @ Tue, 16 Jun 2020 12:10:30: #2 finished! INFO @ Tue, 16 Jun 2020 12:10:30: #2 predicted fragment length is 240 bps INFO @ Tue, 16 Jun 2020 12:10:30: #2 alternative fragment length(s) may be 4,240 bps INFO @ Tue, 16 Jun 2020 12:10:30: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619542/SRX6619542.05_model.r WARNING @ Tue, 16 Jun 2020 12:10:30: #2 Since the d (240) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:10:30: #2 You may need to consider one of the other alternative d(s): 4,240 WARNING @ Tue, 16 Jun 2020 12:10:30: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:10:30: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:10:30: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:10:31: 60000000 INFO @ Tue, 16 Jun 2020 12:10:37: 61000000 INFO @ Tue, 16 Jun 2020 12:10:43: 61000000 INFO @ Tue, 16 Jun 2020 12:10:50: 62000000 INFO @ Tue, 16 Jun 2020 12:10:55: 62000000 INFO @ Tue, 16 Jun 2020 12:11:02: 63000000 INFO @ Tue, 16 Jun 2020 12:11:02: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:11:02: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:11:02: #1 total tags in treatment: 22675086 INFO @ Tue, 16 Jun 2020 12:11:02: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:11:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:11:02: #1 tags after filtering in treatment: 17316912 INFO @ Tue, 16 Jun 2020 12:11:02: #1 Redundant rate of treatment: 0.24 INFO @ Tue, 16 Jun 2020 12:11:02: #1 finished! INFO @ Tue, 16 Jun 2020 12:11:02: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:11:02: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:11:04: #2 number of paired peaks: 2024 INFO @ Tue, 16 Jun 2020 12:11:04: start model_add_line... INFO @ Tue, 16 Jun 2020 12:11:04: start X-correlation... INFO @ Tue, 16 Jun 2020 12:11:04: end of X-cor INFO @ Tue, 16 Jun 2020 12:11:04: #2 finished! INFO @ Tue, 16 Jun 2020 12:11:04: #2 predicted fragment length is 240 bps INFO @ Tue, 16 Jun 2020 12:11:04: #2 alternative fragment length(s) may be 4,240 bps INFO @ Tue, 16 Jun 2020 12:11:04: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619542/SRX6619542.10_model.r WARNING @ Tue, 16 Jun 2020 12:11:04: #2 Since the d (240) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:11:04: #2 You may need to consider one of the other alternative d(s): 4,240 WARNING @ Tue, 16 Jun 2020 12:11:04: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:11:04: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:11:04: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:11:07: 63000000 INFO @ Tue, 16 Jun 2020 12:11:07: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:11:07: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:11:07: #1 total tags in treatment: 22675086 INFO @ Tue, 16 Jun 2020 12:11:07: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:11:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:11:08: #1 tags after filtering in treatment: 17316912 INFO @ Tue, 16 Jun 2020 12:11:08: #1 Redundant rate of treatment: 0.24 INFO @ Tue, 16 Jun 2020 12:11:08: #1 finished! INFO @ Tue, 16 Jun 2020 12:11:08: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:11:08: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:11:09: #2 number of paired peaks: 2024 INFO @ Tue, 16 Jun 2020 12:11:09: start model_add_line... INFO @ Tue, 16 Jun 2020 12:11:09: start X-correlation... INFO @ Tue, 16 Jun 2020 12:11:09: end of X-cor INFO @ Tue, 16 Jun 2020 12:11:09: #2 finished! INFO @ Tue, 16 Jun 2020 12:11:09: #2 predicted fragment length is 240 bps INFO @ Tue, 16 Jun 2020 12:11:09: #2 alternative fragment length(s) may be 4,240 bps INFO @ Tue, 16 Jun 2020 12:11:09: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619542/SRX6619542.20_model.r WARNING @ Tue, 16 Jun 2020 12:11:09: #2 Since the d (240) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:11:09: #2 You may need to consider one of the other alternative d(s): 4,240 WARNING @ Tue, 16 Jun 2020 12:11:09: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:11:09: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:11:09: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:11:20: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:11:39: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619542/SRX6619542.05_peaks.xls INFO @ Tue, 16 Jun 2020 12:11:39: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619542/SRX6619542.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:11:39: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619542/SRX6619542.05_summits.bed INFO @ Tue, 16 Jun 2020 12:11:39: Done! pass1 - making usageList (6 chroms): 3 millis pass2 - checking and writing primary data (13191 records, 4 fields): 12 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 12:11:54: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:11:59: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:12:12: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619542/SRX6619542.10_peaks.xls INFO @ Tue, 16 Jun 2020 12:12:12: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619542/SRX6619542.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:12:12: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619542/SRX6619542.10_summits.bed INFO @ Tue, 16 Jun 2020 12:12:12: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (7712 records, 4 fields): 8 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 12:12:17: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619542/SRX6619542.20_peaks.xls INFO @ Tue, 16 Jun 2020 12:12:17: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619542/SRX6619542.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:12:17: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619542/SRX6619542.20_summits.bed INFO @ Tue, 16 Jun 2020 12:12:17: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (3336 records, 4 fields): 4 millis CompletedMACS2peakCalling