Job ID = 6368840 SRX = SRX6619539 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:33:06 prefetch.2.10.7: 1) Downloading 'SRR9866070'... 2020-06-16T00:33:06 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:46:07 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:46:07 prefetch.2.10.7: 1) 'SRR9866070' was downloaded successfully 2020-06-16T00:46:07 prefetch.2.10.7: 'SRR9866070' has 0 unresolved dependencies Read 32748000 spots for SRR9866070/SRR9866070.sra Written 32748000 spots for SRR9866070/SRR9866070.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:02:15 32748000 reads; of these: 32748000 (100.00%) were paired; of these: 17275167 (52.75%) aligned concordantly 0 times 12899263 (39.39%) aligned concordantly exactly 1 time 2573570 (7.86%) aligned concordantly >1 times ---- 17275167 pairs aligned concordantly 0 times; of these: 8514074 (49.29%) aligned discordantly 1 time ---- 8761093 pairs aligned 0 times concordantly or discordantly; of these: 17522186 mates make up the pairs; of these: 14764567 (84.26%) aligned 0 times 1099401 (6.27%) aligned exactly 1 time 1658218 (9.46%) aligned >1 times 77.46% overall alignment rate Time searching: 01:02:15 Overall time: 01:02:15 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 3188457 / 23538776 = 0.1355 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:18:56: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619539/SRX6619539.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619539/SRX6619539.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619539/SRX6619539.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619539/SRX6619539.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:18:56: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:18:56: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:19:07: 1000000 INFO @ Tue, 16 Jun 2020 11:19:17: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:19:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619539/SRX6619539.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619539/SRX6619539.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619539/SRX6619539.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619539/SRX6619539.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:19:26: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:19:26: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:19:28: 3000000 INFO @ Tue, 16 Jun 2020 11:19:38: 1000000 INFO @ Tue, 16 Jun 2020 11:19:40: 4000000 INFO @ Tue, 16 Jun 2020 11:19:51: 2000000 INFO @ Tue, 16 Jun 2020 11:19:51: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:19:56: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619539/SRX6619539.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619539/SRX6619539.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619539/SRX6619539.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619539/SRX6619539.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:19:56: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:19:56: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:20:04: 3000000 INFO @ Tue, 16 Jun 2020 11:20:04: 6000000 INFO @ Tue, 16 Jun 2020 11:20:09: 1000000 INFO @ Tue, 16 Jun 2020 11:20:16: 4000000 INFO @ Tue, 16 Jun 2020 11:20:16: 7000000 INFO @ Tue, 16 Jun 2020 11:20:21: 2000000 INFO @ Tue, 16 Jun 2020 11:20:28: 5000000 INFO @ Tue, 16 Jun 2020 11:20:28: 8000000 INFO @ Tue, 16 Jun 2020 11:20:33: 3000000 INFO @ Tue, 16 Jun 2020 11:20:40: 9000000 INFO @ Tue, 16 Jun 2020 11:20:41: 6000000 INFO @ Tue, 16 Jun 2020 11:20:46: 4000000 INFO @ Tue, 16 Jun 2020 11:20:52: 10000000 INFO @ Tue, 16 Jun 2020 11:20:53: 7000000 INFO @ Tue, 16 Jun 2020 11:20:58: 5000000 INFO @ Tue, 16 Jun 2020 11:21:03: 11000000 INFO @ Tue, 16 Jun 2020 11:21:05: 8000000 INFO @ Tue, 16 Jun 2020 11:21:10: 6000000 INFO @ Tue, 16 Jun 2020 11:21:13: 12000000 INFO @ Tue, 16 Jun 2020 11:21:17: 9000000 INFO @ Tue, 16 Jun 2020 11:21:23: 7000000 INFO @ Tue, 16 Jun 2020 11:21:24: 13000000 INFO @ Tue, 16 Jun 2020 11:21:29: 10000000 INFO @ Tue, 16 Jun 2020 11:21:35: 14000000 INFO @ Tue, 16 Jun 2020 11:21:35: 8000000 INFO @ Tue, 16 Jun 2020 11:21:40: 11000000 INFO @ Tue, 16 Jun 2020 11:21:45: 15000000 INFO @ Tue, 16 Jun 2020 11:21:47: 9000000 INFO @ Tue, 16 Jun 2020 11:21:51: 12000000 INFO @ Tue, 16 Jun 2020 11:21:56: 16000000 INFO @ Tue, 16 Jun 2020 11:21:59: 10000000 INFO @ Tue, 16 Jun 2020 11:22:02: 13000000 INFO @ Tue, 16 Jun 2020 11:22:06: 17000000 INFO @ Tue, 16 Jun 2020 11:22:11: 11000000 INFO @ Tue, 16 Jun 2020 11:22:12: 14000000 INFO @ Tue, 16 Jun 2020 11:22:17: 18000000 INFO @ Tue, 16 Jun 2020 11:22:21: 12000000 INFO @ Tue, 16 Jun 2020 11:22:23: 15000000 INFO @ Tue, 16 Jun 2020 11:22:27: 19000000 INFO @ Tue, 16 Jun 2020 11:22:32: 13000000 INFO @ Tue, 16 Jun 2020 11:22:34: 16000000 INFO @ Tue, 16 Jun 2020 11:22:38: 20000000 INFO @ Tue, 16 Jun 2020 11:22:43: 14000000 INFO @ Tue, 16 Jun 2020 11:22:44: 17000000 INFO @ Tue, 16 Jun 2020 11:22:49: 21000000 INFO @ Tue, 16 Jun 2020 11:22:54: 15000000 INFO @ Tue, 16 Jun 2020 11:22:55: 18000000 INFO @ Tue, 16 Jun 2020 11:23:00: 22000000 INFO @ Tue, 16 Jun 2020 11:23:05: 16000000 INFO @ Tue, 16 Jun 2020 11:23:06: 19000000 INFO @ Tue, 16 Jun 2020 11:23:11: 23000000 INFO @ Tue, 16 Jun 2020 11:23:16: 17000000 INFO @ Tue, 16 Jun 2020 11:23:17: 20000000 INFO @ Tue, 16 Jun 2020 11:23:22: 24000000 INFO @ Tue, 16 Jun 2020 11:23:27: 18000000 INFO @ Tue, 16 Jun 2020 11:23:27: 21000000 INFO @ Tue, 16 Jun 2020 11:23:33: 25000000 INFO @ Tue, 16 Jun 2020 11:23:37: 19000000 INFO @ Tue, 16 Jun 2020 11:23:38: 22000000 INFO @ Tue, 16 Jun 2020 11:23:44: 26000000 INFO @ Tue, 16 Jun 2020 11:23:48: 20000000 INFO @ Tue, 16 Jun 2020 11:23:49: 23000000 INFO @ Tue, 16 Jun 2020 11:23:55: 27000000 INFO @ Tue, 16 Jun 2020 11:23:59: 21000000 INFO @ Tue, 16 Jun 2020 11:24:00: 24000000 INFO @ Tue, 16 Jun 2020 11:24:06: 28000000 INFO @ Tue, 16 Jun 2020 11:24:10: 22000000 INFO @ Tue, 16 Jun 2020 11:24:11: 25000000 INFO @ Tue, 16 Jun 2020 11:24:17: 29000000 INFO @ Tue, 16 Jun 2020 11:24:22: 23000000 INFO @ Tue, 16 Jun 2020 11:24:22: 26000000 INFO @ Tue, 16 Jun 2020 11:24:28: 30000000 INFO @ Tue, 16 Jun 2020 11:24:33: 24000000 INFO @ Tue, 16 Jun 2020 11:24:33: 27000000 INFO @ Tue, 16 Jun 2020 11:24:39: 31000000 INFO @ Tue, 16 Jun 2020 11:24:44: 25000000 INFO @ Tue, 16 Jun 2020 11:24:45: 28000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:24:50: 32000000 INFO @ Tue, 16 Jun 2020 11:24:55: 26000000 INFO @ Tue, 16 Jun 2020 11:24:56: 29000000 INFO @ Tue, 16 Jun 2020 11:25:01: 33000000 INFO @ Tue, 16 Jun 2020 11:25:06: 27000000 INFO @ Tue, 16 Jun 2020 11:25:07: 30000000 INFO @ Tue, 16 Jun 2020 11:25:12: 34000000 INFO @ Tue, 16 Jun 2020 11:25:17: 28000000 INFO @ Tue, 16 Jun 2020 11:25:18: 31000000 INFO @ Tue, 16 Jun 2020 11:25:23: 35000000 INFO @ Tue, 16 Jun 2020 11:25:29: 29000000 INFO @ Tue, 16 Jun 2020 11:25:29: 32000000 INFO @ Tue, 16 Jun 2020 11:25:34: 36000000 INFO @ Tue, 16 Jun 2020 11:25:40: 33000000 INFO @ Tue, 16 Jun 2020 11:25:40: 30000000 INFO @ Tue, 16 Jun 2020 11:25:46: 37000000 INFO @ Tue, 16 Jun 2020 11:25:51: 34000000 INFO @ Tue, 16 Jun 2020 11:25:51: 31000000 INFO @ Tue, 16 Jun 2020 11:25:56: 38000000 INFO @ Tue, 16 Jun 2020 11:26:02: 35000000 INFO @ Tue, 16 Jun 2020 11:26:02: 32000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:26:07: 39000000 INFO @ Tue, 16 Jun 2020 11:26:13: 36000000 INFO @ Tue, 16 Jun 2020 11:26:13: 33000000 INFO @ Tue, 16 Jun 2020 11:26:18: 40000000 INFO @ Tue, 16 Jun 2020 11:26:24: 37000000 INFO @ Tue, 16 Jun 2020 11:26:24: 34000000 INFO @ Tue, 16 Jun 2020 11:26:29: 41000000 INFO @ Tue, 16 Jun 2020 11:26:35: 38000000 INFO @ Tue, 16 Jun 2020 11:26:35: 35000000 INFO @ Tue, 16 Jun 2020 11:26:40: 42000000 INFO @ Tue, 16 Jun 2020 11:26:46: 39000000 INFO @ Tue, 16 Jun 2020 11:26:47: 36000000 INFO @ Tue, 16 Jun 2020 11:26:51: 43000000 INFO @ Tue, 16 Jun 2020 11:26:57: 40000000 INFO @ Tue, 16 Jun 2020 11:26:58: 37000000 INFO @ Tue, 16 Jun 2020 11:27:02: 44000000 INFO @ Tue, 16 Jun 2020 11:27:06: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:27:06: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:27:06: #1 total tags in treatment: 13220976 INFO @ Tue, 16 Jun 2020 11:27:06: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:27:06: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:27:06: #1 tags after filtering in treatment: 11328859 INFO @ Tue, 16 Jun 2020 11:27:06: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:27:06: #1 finished! INFO @ Tue, 16 Jun 2020 11:27:06: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:27:06: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:27:07: #2 number of paired peaks: 302 WARNING @ Tue, 16 Jun 2020 11:27:07: Fewer paired peaks (302) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 302 pairs to build model! INFO @ Tue, 16 Jun 2020 11:27:07: start model_add_line... INFO @ Tue, 16 Jun 2020 11:27:07: start X-correlation... INFO @ Tue, 16 Jun 2020 11:27:07: end of X-cor INFO @ Tue, 16 Jun 2020 11:27:07: #2 finished! INFO @ Tue, 16 Jun 2020 11:27:07: #2 predicted fragment length is 207 bps INFO @ Tue, 16 Jun 2020 11:27:07: #2 alternative fragment length(s) may be 207 bps INFO @ Tue, 16 Jun 2020 11:27:07: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619539/SRX6619539.05_model.r WARNING @ Tue, 16 Jun 2020 11:27:07: #2 Since the d (207) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:27:07: #2 You may need to consider one of the other alternative d(s): 207 WARNING @ Tue, 16 Jun 2020 11:27:07: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:27:07: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:27:07: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:27:08: 41000000 INFO @ Tue, 16 Jun 2020 11:27:09: 38000000 INFO @ Tue, 16 Jun 2020 11:27:19: 42000000 INFO @ Tue, 16 Jun 2020 11:27:20: 39000000 INFO @ Tue, 16 Jun 2020 11:27:29: 43000000 INFO @ Tue, 16 Jun 2020 11:27:31: 40000000 INFO @ Tue, 16 Jun 2020 11:27:34: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:27:40: 44000000 INFO @ Tue, 16 Jun 2020 11:27:43: 41000000 INFO @ Tue, 16 Jun 2020 11:27:44: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:27:44: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:27:44: #1 total tags in treatment: 13220976 INFO @ Tue, 16 Jun 2020 11:27:44: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:27:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:27:45: #1 tags after filtering in treatment: 11328859 INFO @ Tue, 16 Jun 2020 11:27:45: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:27:45: #1 finished! INFO @ Tue, 16 Jun 2020 11:27:45: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:27:45: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:27:45: #2 number of paired peaks: 302 WARNING @ Tue, 16 Jun 2020 11:27:45: Fewer paired peaks (302) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 302 pairs to build model! INFO @ Tue, 16 Jun 2020 11:27:45: start model_add_line... INFO @ Tue, 16 Jun 2020 11:27:46: start X-correlation... INFO @ Tue, 16 Jun 2020 11:27:46: end of X-cor INFO @ Tue, 16 Jun 2020 11:27:46: #2 finished! INFO @ Tue, 16 Jun 2020 11:27:46: #2 predicted fragment length is 207 bps INFO @ Tue, 16 Jun 2020 11:27:46: #2 alternative fragment length(s) may be 207 bps INFO @ Tue, 16 Jun 2020 11:27:46: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619539/SRX6619539.10_model.r WARNING @ Tue, 16 Jun 2020 11:27:46: #2 Since the d (207) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:27:46: #2 You may need to consider one of the other alternative d(s): 207 WARNING @ Tue, 16 Jun 2020 11:27:46: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:27:46: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:27:46: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:27:46: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619539/SRX6619539.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:27:46: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619539/SRX6619539.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:27:46: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619539/SRX6619539.05_summits.bed INFO @ Tue, 16 Jun 2020 11:27:46: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (489 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:27:53: 42000000 INFO @ Tue, 16 Jun 2020 11:28:03: 43000000 INFO @ Tue, 16 Jun 2020 11:28:12: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:28:13: 44000000 INFO @ Tue, 16 Jun 2020 11:28:17: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:28:17: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:28:17: #1 total tags in treatment: 13220976 INFO @ Tue, 16 Jun 2020 11:28:17: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:28:17: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:28:17: #1 tags after filtering in treatment: 11328859 INFO @ Tue, 16 Jun 2020 11:28:17: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:28:17: #1 finished! INFO @ Tue, 16 Jun 2020 11:28:17: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:28:17: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:28:18: #2 number of paired peaks: 302 WARNING @ Tue, 16 Jun 2020 11:28:18: Fewer paired peaks (302) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 302 pairs to build model! INFO @ Tue, 16 Jun 2020 11:28:18: start model_add_line... INFO @ Tue, 16 Jun 2020 11:28:18: start X-correlation... INFO @ Tue, 16 Jun 2020 11:28:18: end of X-cor INFO @ Tue, 16 Jun 2020 11:28:18: #2 finished! INFO @ Tue, 16 Jun 2020 11:28:18: #2 predicted fragment length is 207 bps INFO @ Tue, 16 Jun 2020 11:28:18: #2 alternative fragment length(s) may be 207 bps INFO @ Tue, 16 Jun 2020 11:28:18: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619539/SRX6619539.20_model.r WARNING @ Tue, 16 Jun 2020 11:28:18: #2 Since the d (207) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:28:18: #2 You may need to consider one of the other alternative d(s): 207 WARNING @ Tue, 16 Jun 2020 11:28:18: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:28:18: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:28:18: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:28:24: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619539/SRX6619539.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:28:24: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619539/SRX6619539.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:28:24: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619539/SRX6619539.10_summits.bed INFO @ Tue, 16 Jun 2020 11:28:24: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (343 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:28:43: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:28:55: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619539/SRX6619539.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:28:55: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619539/SRX6619539.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:28:55: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619539/SRX6619539.20_summits.bed INFO @ Tue, 16 Jun 2020 11:28:55: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (221 records, 4 fields): 1 millis CompletedMACS2peakCalling