Job ID = 6368831 SRX = SRX6619530 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:31:46 prefetch.2.10.7: 1) Downloading 'SRR9866079'... 2020-06-16T00:31:46 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:42:21 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:42:21 prefetch.2.10.7: 1) 'SRR9866079' was downloaded successfully 2020-06-16T00:42:21 prefetch.2.10.7: 'SRR9866079' has 0 unresolved dependencies Read 29592922 spots for SRR9866079/SRR9866079.sra Written 29592922 spots for SRR9866079/SRR9866079.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:05:26 29592922 reads; of these: 29592922 (100.00%) were paired; of these: 14065594 (47.53%) aligned concordantly 0 times 11866880 (40.10%) aligned concordantly exactly 1 time 3660448 (12.37%) aligned concordantly >1 times ---- 14065594 pairs aligned concordantly 0 times; of these: 7315772 (52.01%) aligned discordantly 1 time ---- 6749822 pairs aligned 0 times concordantly or discordantly; of these: 13499644 mates make up the pairs; of these: 10064311 (74.55%) aligned 0 times 1111112 (8.23%) aligned exactly 1 time 2324221 (17.22%) aligned >1 times 83.00% overall alignment rate Time searching: 01:05:26 Overall time: 01:05:26 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 3101063 / 22325393 = 0.1389 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:17:45: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619530/SRX6619530.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619530/SRX6619530.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619530/SRX6619530.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619530/SRX6619530.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:17:45: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:17:45: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:17:54: 1000000 INFO @ Tue, 16 Jun 2020 11:18:03: 2000000 INFO @ Tue, 16 Jun 2020 11:18:12: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:18:15: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619530/SRX6619530.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619530/SRX6619530.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619530/SRX6619530.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619530/SRX6619530.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:18:15: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:18:15: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:18:22: 4000000 INFO @ Tue, 16 Jun 2020 11:18:28: 1000000 INFO @ Tue, 16 Jun 2020 11:18:34: 5000000 INFO @ Tue, 16 Jun 2020 11:18:40: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:18:45: 6000000 INFO @ Tue, 16 Jun 2020 11:18:45: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619530/SRX6619530.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619530/SRX6619530.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619530/SRX6619530.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619530/SRX6619530.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:18:45: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:18:45: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:18:53: 3000000 INFO @ Tue, 16 Jun 2020 11:18:57: 7000000 INFO @ Tue, 16 Jun 2020 11:18:58: 1000000 INFO @ Tue, 16 Jun 2020 11:19:06: 4000000 INFO @ Tue, 16 Jun 2020 11:19:09: 8000000 INFO @ Tue, 16 Jun 2020 11:19:10: 2000000 INFO @ Tue, 16 Jun 2020 11:19:19: 5000000 INFO @ Tue, 16 Jun 2020 11:19:21: 9000000 INFO @ Tue, 16 Jun 2020 11:19:22: 3000000 INFO @ Tue, 16 Jun 2020 11:19:31: 6000000 INFO @ Tue, 16 Jun 2020 11:19:33: 10000000 INFO @ Tue, 16 Jun 2020 11:19:34: 4000000 INFO @ Tue, 16 Jun 2020 11:19:44: 7000000 INFO @ Tue, 16 Jun 2020 11:19:46: 5000000 INFO @ Tue, 16 Jun 2020 11:19:46: 11000000 INFO @ Tue, 16 Jun 2020 11:19:57: 8000000 INFO @ Tue, 16 Jun 2020 11:19:58: 6000000 INFO @ Tue, 16 Jun 2020 11:19:58: 12000000 INFO @ Tue, 16 Jun 2020 11:20:10: 7000000 INFO @ Tue, 16 Jun 2020 11:20:10: 9000000 INFO @ Tue, 16 Jun 2020 11:20:10: 13000000 INFO @ Tue, 16 Jun 2020 11:20:22: 8000000 INFO @ Tue, 16 Jun 2020 11:20:23: 14000000 INFO @ Tue, 16 Jun 2020 11:20:23: 10000000 INFO @ Tue, 16 Jun 2020 11:20:34: 9000000 INFO @ Tue, 16 Jun 2020 11:20:35: 15000000 INFO @ Tue, 16 Jun 2020 11:20:36: 11000000 INFO @ Tue, 16 Jun 2020 11:20:47: 10000000 INFO @ Tue, 16 Jun 2020 11:20:47: 16000000 INFO @ Tue, 16 Jun 2020 11:20:49: 12000000 INFO @ Tue, 16 Jun 2020 11:20:59: 11000000 INFO @ Tue, 16 Jun 2020 11:21:00: 17000000 INFO @ Tue, 16 Jun 2020 11:21:01: 13000000 INFO @ Tue, 16 Jun 2020 11:21:11: 12000000 INFO @ Tue, 16 Jun 2020 11:21:12: 18000000 INFO @ Tue, 16 Jun 2020 11:21:14: 14000000 INFO @ Tue, 16 Jun 2020 11:21:24: 13000000 INFO @ Tue, 16 Jun 2020 11:21:25: 19000000 INFO @ Tue, 16 Jun 2020 11:21:27: 15000000 INFO @ Tue, 16 Jun 2020 11:21:36: 14000000 INFO @ Tue, 16 Jun 2020 11:21:37: 20000000 INFO @ Tue, 16 Jun 2020 11:21:40: 16000000 INFO @ Tue, 16 Jun 2020 11:21:48: 15000000 INFO @ Tue, 16 Jun 2020 11:21:49: 21000000 INFO @ Tue, 16 Jun 2020 11:21:52: 17000000 INFO @ Tue, 16 Jun 2020 11:22:01: 16000000 INFO @ Tue, 16 Jun 2020 11:22:02: 22000000 INFO @ Tue, 16 Jun 2020 11:22:05: 18000000 INFO @ Tue, 16 Jun 2020 11:22:13: 17000000 INFO @ Tue, 16 Jun 2020 11:22:14: 23000000 INFO @ Tue, 16 Jun 2020 11:22:17: 19000000 INFO @ Tue, 16 Jun 2020 11:22:25: 18000000 INFO @ Tue, 16 Jun 2020 11:22:26: 24000000 INFO @ Tue, 16 Jun 2020 11:22:30: 20000000 INFO @ Tue, 16 Jun 2020 11:22:37: 19000000 INFO @ Tue, 16 Jun 2020 11:22:39: 25000000 INFO @ Tue, 16 Jun 2020 11:22:42: 21000000 INFO @ Tue, 16 Jun 2020 11:22:50: 20000000 INFO @ Tue, 16 Jun 2020 11:22:51: 26000000 INFO @ Tue, 16 Jun 2020 11:22:55: 22000000 INFO @ Tue, 16 Jun 2020 11:23:02: 21000000 INFO @ Tue, 16 Jun 2020 11:23:03: 27000000 INFO @ Tue, 16 Jun 2020 11:23:08: 23000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:23:14: 22000000 INFO @ Tue, 16 Jun 2020 11:23:15: 28000000 INFO @ Tue, 16 Jun 2020 11:23:21: 24000000 INFO @ Tue, 16 Jun 2020 11:23:26: 23000000 INFO @ Tue, 16 Jun 2020 11:23:27: 29000000 INFO @ Tue, 16 Jun 2020 11:23:33: 25000000 INFO @ Tue, 16 Jun 2020 11:23:38: 24000000 INFO @ Tue, 16 Jun 2020 11:23:39: 30000000 INFO @ Tue, 16 Jun 2020 11:23:46: 26000000 INFO @ Tue, 16 Jun 2020 11:23:50: 25000000 INFO @ Tue, 16 Jun 2020 11:23:51: 31000000 INFO @ Tue, 16 Jun 2020 11:23:59: 27000000 INFO @ Tue, 16 Jun 2020 11:24:01: 26000000 INFO @ Tue, 16 Jun 2020 11:24:02: 32000000 INFO @ Tue, 16 Jun 2020 11:24:11: 28000000 INFO @ Tue, 16 Jun 2020 11:24:13: 27000000 INFO @ Tue, 16 Jun 2020 11:24:14: 33000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:24:23: 29000000 INFO @ Tue, 16 Jun 2020 11:24:25: 28000000 INFO @ Tue, 16 Jun 2020 11:24:26: 34000000 INFO @ Tue, 16 Jun 2020 11:24:36: 30000000 INFO @ Tue, 16 Jun 2020 11:24:37: 29000000 INFO @ Tue, 16 Jun 2020 11:24:38: 35000000 INFO @ Tue, 16 Jun 2020 11:24:48: 31000000 INFO @ Tue, 16 Jun 2020 11:24:48: 30000000 INFO @ Tue, 16 Jun 2020 11:24:50: 36000000 INFO @ Tue, 16 Jun 2020 11:25:00: 31000000 INFO @ Tue, 16 Jun 2020 11:25:00: 32000000 INFO @ Tue, 16 Jun 2020 11:25:02: 37000000 INFO @ Tue, 16 Jun 2020 11:25:12: 32000000 INFO @ Tue, 16 Jun 2020 11:25:12: 33000000 INFO @ Tue, 16 Jun 2020 11:25:14: 38000000 INFO @ Tue, 16 Jun 2020 11:25:23: 33000000 INFO @ Tue, 16 Jun 2020 11:25:25: 34000000 INFO @ Tue, 16 Jun 2020 11:25:25: 39000000 INFO @ Tue, 16 Jun 2020 11:25:35: 34000000 INFO @ Tue, 16 Jun 2020 11:25:37: 40000000 INFO @ Tue, 16 Jun 2020 11:25:37: 35000000 INFO @ Tue, 16 Jun 2020 11:25:47: 35000000 INFO @ Tue, 16 Jun 2020 11:25:49: 41000000 INFO @ Tue, 16 Jun 2020 11:25:50: 36000000 INFO @ Tue, 16 Jun 2020 11:25:59: 36000000 INFO @ Tue, 16 Jun 2020 11:26:01: 42000000 INFO @ Tue, 16 Jun 2020 11:26:03: 37000000 INFO @ Tue, 16 Jun 2020 11:26:10: 37000000 INFO @ Tue, 16 Jun 2020 11:26:11: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:26:11: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:26:11: #1 total tags in treatment: 13160267 INFO @ Tue, 16 Jun 2020 11:26:11: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:26:11: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:26:12: #1 tags after filtering in treatment: 10631925 INFO @ Tue, 16 Jun 2020 11:26:12: #1 Redundant rate of treatment: 0.19 INFO @ Tue, 16 Jun 2020 11:26:12: #1 finished! INFO @ Tue, 16 Jun 2020 11:26:12: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:26:12: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:26:12: #2 number of paired peaks: 382 WARNING @ Tue, 16 Jun 2020 11:26:12: Fewer paired peaks (382) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 382 pairs to build model! INFO @ Tue, 16 Jun 2020 11:26:12: start model_add_line... INFO @ Tue, 16 Jun 2020 11:26:12: start X-correlation... INFO @ Tue, 16 Jun 2020 11:26:12: end of X-cor INFO @ Tue, 16 Jun 2020 11:26:12: #2 finished! INFO @ Tue, 16 Jun 2020 11:26:12: #2 predicted fragment length is 212 bps INFO @ Tue, 16 Jun 2020 11:26:12: #2 alternative fragment length(s) may be 212 bps INFO @ Tue, 16 Jun 2020 11:26:12: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619530/SRX6619530.05_model.r WARNING @ Tue, 16 Jun 2020 11:26:12: #2 Since the d (212) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:26:12: #2 You may need to consider one of the other alternative d(s): 212 WARNING @ Tue, 16 Jun 2020 11:26:12: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:26:12: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:26:12: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:26:15: 38000000 INFO @ Tue, 16 Jun 2020 11:26:21: 38000000 INFO @ Tue, 16 Jun 2020 11:26:28: 39000000 INFO @ Tue, 16 Jun 2020 11:26:33: 39000000 INFO @ Tue, 16 Jun 2020 11:26:37: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:26:41: 40000000 INFO @ Tue, 16 Jun 2020 11:26:44: 40000000 INFO @ Tue, 16 Jun 2020 11:26:49: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619530/SRX6619530.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:26:49: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619530/SRX6619530.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:26:49: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619530/SRX6619530.05_summits.bed INFO @ Tue, 16 Jun 2020 11:26:49: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (505 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:26:54: 41000000 INFO @ Tue, 16 Jun 2020 11:26:55: 41000000 INFO @ Tue, 16 Jun 2020 11:27:07: 42000000 INFO @ Tue, 16 Jun 2020 11:27:07: 42000000 INFO @ Tue, 16 Jun 2020 11:27:18: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:27:18: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:27:18: #1 total tags in treatment: 13160267 INFO @ Tue, 16 Jun 2020 11:27:18: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:27:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:27:19: #1 tags after filtering in treatment: 10631925 INFO @ Tue, 16 Jun 2020 11:27:19: #1 Redundant rate of treatment: 0.19 INFO @ Tue, 16 Jun 2020 11:27:19: #1 finished! INFO @ Tue, 16 Jun 2020 11:27:19: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:27:19: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:27:19: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:27:19: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:27:19: #1 total tags in treatment: 13160267 INFO @ Tue, 16 Jun 2020 11:27:19: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:27:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:27:19: #1 tags after filtering in treatment: 10631925 INFO @ Tue, 16 Jun 2020 11:27:19: #1 Redundant rate of treatment: 0.19 INFO @ Tue, 16 Jun 2020 11:27:19: #1 finished! INFO @ Tue, 16 Jun 2020 11:27:19: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:27:19: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:27:20: #2 number of paired peaks: 382 WARNING @ Tue, 16 Jun 2020 11:27:20: Fewer paired peaks (382) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 382 pairs to build model! INFO @ Tue, 16 Jun 2020 11:27:20: start model_add_line... INFO @ Tue, 16 Jun 2020 11:27:20: start X-correlation... INFO @ Tue, 16 Jun 2020 11:27:20: end of X-cor INFO @ Tue, 16 Jun 2020 11:27:20: #2 finished! INFO @ Tue, 16 Jun 2020 11:27:20: #2 predicted fragment length is 212 bps INFO @ Tue, 16 Jun 2020 11:27:20: #2 alternative fragment length(s) may be 212 bps INFO @ Tue, 16 Jun 2020 11:27:20: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619530/SRX6619530.10_model.r WARNING @ Tue, 16 Jun 2020 11:27:20: #2 Since the d (212) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:27:20: #2 You may need to consider one of the other alternative d(s): 212 WARNING @ Tue, 16 Jun 2020 11:27:20: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:27:20: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:27:20: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:27:20: #2 number of paired peaks: 382 WARNING @ Tue, 16 Jun 2020 11:27:20: Fewer paired peaks (382) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 382 pairs to build model! INFO @ Tue, 16 Jun 2020 11:27:20: start model_add_line... INFO @ Tue, 16 Jun 2020 11:27:20: start X-correlation... INFO @ Tue, 16 Jun 2020 11:27:20: end of X-cor INFO @ Tue, 16 Jun 2020 11:27:20: #2 finished! INFO @ Tue, 16 Jun 2020 11:27:20: #2 predicted fragment length is 212 bps INFO @ Tue, 16 Jun 2020 11:27:20: #2 alternative fragment length(s) may be 212 bps INFO @ Tue, 16 Jun 2020 11:27:20: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619530/SRX6619530.20_model.r WARNING @ Tue, 16 Jun 2020 11:27:20: #2 Since the d (212) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:27:20: #2 You may need to consider one of the other alternative d(s): 212 WARNING @ Tue, 16 Jun 2020 11:27:20: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:27:20: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:27:20: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:27:44: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:27:45: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:27:56: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619530/SRX6619530.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:27:56: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619530/SRX6619530.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:27:56: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619530/SRX6619530.10_summits.bed INFO @ Tue, 16 Jun 2020 11:27:56: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (332 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:27:58: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619530/SRX6619530.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:27:58: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619530/SRX6619530.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:27:58: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619530/SRX6619530.20_summits.bed INFO @ Tue, 16 Jun 2020 11:27:58: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (197 records, 4 fields): 1 millis CompletedMACS2peakCalling