Job ID = 6367770 SRX = SRX4085340 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-15T23:30:50 prefetch.2.10.7: 1) Downloading 'SRR7167369'... 2020-06-15T23:30:50 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:46:04 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:46:04 prefetch.2.10.7: 1) 'SRR7167369' was downloaded successfully Read 34958879 spots for SRR7167369/SRR7167369.sra Written 34958879 spots for SRR7167369/SRR7167369.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:27:45 34958879 reads; of these: 34958879 (100.00%) were paired; of these: 2792111 (7.99%) aligned concordantly 0 times 28233911 (80.76%) aligned concordantly exactly 1 time 3932857 (11.25%) aligned concordantly >1 times ---- 2792111 pairs aligned concordantly 0 times; of these: 274613 (9.84%) aligned discordantly 1 time ---- 2517498 pairs aligned 0 times concordantly or discordantly; of these: 5034996 mates make up the pairs; of these: 3761098 (74.70%) aligned 0 times 1029581 (20.45%) aligned exactly 1 time 244317 (4.85%) aligned >1 times 94.62% overall alignment rate Time searching: 00:27:45 Overall time: 00:27:45 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 7842315 / 32389352 = 0.2421 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 09:34:03: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4085340/SRX4085340.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4085340/SRX4085340.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4085340/SRX4085340.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4085340/SRX4085340.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 09:34:03: #1 read tag files... INFO @ Tue, 16 Jun 2020 09:34:03: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 09:34:09: 1000000 INFO @ Tue, 16 Jun 2020 09:34:14: 2000000 INFO @ Tue, 16 Jun 2020 09:34:20: 3000000 INFO @ Tue, 16 Jun 2020 09:34:25: 4000000 INFO @ Tue, 16 Jun 2020 09:34:31: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 09:34:33: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4085340/SRX4085340.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4085340/SRX4085340.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4085340/SRX4085340.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4085340/SRX4085340.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 09:34:33: #1 read tag files... INFO @ Tue, 16 Jun 2020 09:34:33: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 09:34:37: 6000000 INFO @ Tue, 16 Jun 2020 09:34:39: 1000000 INFO @ Tue, 16 Jun 2020 09:34:43: 7000000 INFO @ Tue, 16 Jun 2020 09:34:46: 2000000 INFO @ Tue, 16 Jun 2020 09:34:49: 8000000 INFO @ Tue, 16 Jun 2020 09:34:52: 3000000 INFO @ Tue, 16 Jun 2020 09:34:55: 9000000 INFO @ Tue, 16 Jun 2020 09:34:58: 4000000 INFO @ Tue, 16 Jun 2020 09:35:01: 10000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 09:35:04: 5000000 INFO @ Tue, 16 Jun 2020 09:35:05: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4085340/SRX4085340.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4085340/SRX4085340.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4085340/SRX4085340.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4085340/SRX4085340.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 09:35:05: #1 read tag files... INFO @ Tue, 16 Jun 2020 09:35:05: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 09:35:07: 11000000 INFO @ Tue, 16 Jun 2020 09:35:11: 6000000 INFO @ Tue, 16 Jun 2020 09:35:12: 1000000 INFO @ Tue, 16 Jun 2020 09:35:14: 12000000 INFO @ Tue, 16 Jun 2020 09:35:17: 7000000 INFO @ Tue, 16 Jun 2020 09:35:19: 2000000 INFO @ Tue, 16 Jun 2020 09:35:20: 13000000 INFO @ Tue, 16 Jun 2020 09:35:24: 8000000 INFO @ Tue, 16 Jun 2020 09:35:25: 3000000 INFO @ Tue, 16 Jun 2020 09:35:27: 14000000 INFO @ Tue, 16 Jun 2020 09:35:30: 9000000 INFO @ Tue, 16 Jun 2020 09:35:32: 4000000 INFO @ Tue, 16 Jun 2020 09:35:33: 15000000 INFO @ Tue, 16 Jun 2020 09:35:36: 10000000 INFO @ Tue, 16 Jun 2020 09:35:38: 5000000 INFO @ Tue, 16 Jun 2020 09:35:40: 16000000 INFO @ Tue, 16 Jun 2020 09:35:43: 11000000 INFO @ Tue, 16 Jun 2020 09:35:45: 6000000 INFO @ Tue, 16 Jun 2020 09:35:46: 17000000 INFO @ Tue, 16 Jun 2020 09:35:49: 12000000 INFO @ Tue, 16 Jun 2020 09:35:52: 7000000 INFO @ Tue, 16 Jun 2020 09:35:53: 18000000 INFO @ Tue, 16 Jun 2020 09:35:55: 13000000 INFO @ Tue, 16 Jun 2020 09:35:59: 8000000 INFO @ Tue, 16 Jun 2020 09:35:59: 19000000 INFO @ Tue, 16 Jun 2020 09:36:02: 14000000 INFO @ Tue, 16 Jun 2020 09:36:05: 9000000 INFO @ Tue, 16 Jun 2020 09:36:06: 20000000 INFO @ Tue, 16 Jun 2020 09:36:08: 15000000 INFO @ Tue, 16 Jun 2020 09:36:12: 10000000 INFO @ Tue, 16 Jun 2020 09:36:12: 21000000 INFO @ Tue, 16 Jun 2020 09:36:14: 16000000 INFO @ Tue, 16 Jun 2020 09:36:18: 11000000 INFO @ Tue, 16 Jun 2020 09:36:18: 22000000 INFO @ Tue, 16 Jun 2020 09:36:21: 17000000 INFO @ Tue, 16 Jun 2020 09:36:24: 12000000 INFO @ Tue, 16 Jun 2020 09:36:25: 23000000 INFO @ Tue, 16 Jun 2020 09:36:27: 18000000 INFO @ Tue, 16 Jun 2020 09:36:31: 13000000 INFO @ Tue, 16 Jun 2020 09:36:31: 24000000 INFO @ Tue, 16 Jun 2020 09:36:33: 19000000 INFO @ Tue, 16 Jun 2020 09:36:37: 14000000 INFO @ Tue, 16 Jun 2020 09:36:38: 25000000 INFO @ Tue, 16 Jun 2020 09:36:39: 20000000 INFO @ Tue, 16 Jun 2020 09:36:44: 15000000 INFO @ Tue, 16 Jun 2020 09:36:44: 26000000 INFO @ Tue, 16 Jun 2020 09:36:46: 21000000 INFO @ Tue, 16 Jun 2020 09:36:50: 16000000 INFO @ Tue, 16 Jun 2020 09:36:50: 27000000 INFO @ Tue, 16 Jun 2020 09:36:52: 22000000 INFO @ Tue, 16 Jun 2020 09:36:56: 17000000 INFO @ Tue, 16 Jun 2020 09:36:57: 28000000 INFO @ Tue, 16 Jun 2020 09:36:58: 23000000 INFO @ Tue, 16 Jun 2020 09:37:03: 18000000 INFO @ Tue, 16 Jun 2020 09:37:03: 29000000 INFO @ Tue, 16 Jun 2020 09:37:05: 24000000 INFO @ Tue, 16 Jun 2020 09:37:09: 19000000 INFO @ Tue, 16 Jun 2020 09:37:10: 30000000 INFO @ Tue, 16 Jun 2020 09:37:11: 25000000 INFO @ Tue, 16 Jun 2020 09:37:16: 20000000 INFO @ Tue, 16 Jun 2020 09:37:16: 31000000 INFO @ Tue, 16 Jun 2020 09:37:17: 26000000 INFO @ Tue, 16 Jun 2020 09:37:22: 21000000 INFO @ Tue, 16 Jun 2020 09:37:22: 32000000 INFO @ Tue, 16 Jun 2020 09:37:23: 27000000 INFO @ Tue, 16 Jun 2020 09:37:28: 22000000 INFO @ Tue, 16 Jun 2020 09:37:29: 33000000 INFO @ Tue, 16 Jun 2020 09:37:29: 28000000 INFO @ Tue, 16 Jun 2020 09:37:35: 23000000 INFO @ Tue, 16 Jun 2020 09:37:35: 34000000 INFO @ Tue, 16 Jun 2020 09:37:35: 29000000 INFO @ Tue, 16 Jun 2020 09:37:41: 24000000 INFO @ Tue, 16 Jun 2020 09:37:42: 30000000 INFO @ Tue, 16 Jun 2020 09:37:42: 35000000 INFO @ Tue, 16 Jun 2020 09:37:47: 25000000 INFO @ Tue, 16 Jun 2020 09:37:48: 31000000 INFO @ Tue, 16 Jun 2020 09:37:48: 36000000 INFO @ Tue, 16 Jun 2020 09:37:54: 26000000 INFO @ Tue, 16 Jun 2020 09:37:54: 32000000 INFO @ Tue, 16 Jun 2020 09:37:54: 37000000 INFO @ Tue, 16 Jun 2020 09:38:00: 27000000 INFO @ Tue, 16 Jun 2020 09:38:00: 33000000 INFO @ Tue, 16 Jun 2020 09:38:01: 38000000 INFO @ Tue, 16 Jun 2020 09:38:06: 28000000 INFO @ Tue, 16 Jun 2020 09:38:07: 34000000 INFO @ Tue, 16 Jun 2020 09:38:07: 39000000 INFO @ Tue, 16 Jun 2020 09:38:13: 29000000 INFO @ Tue, 16 Jun 2020 09:38:13: 35000000 INFO @ Tue, 16 Jun 2020 09:38:13: 40000000 INFO @ Tue, 16 Jun 2020 09:38:19: 36000000 INFO @ Tue, 16 Jun 2020 09:38:19: 30000000 INFO @ Tue, 16 Jun 2020 09:38:19: 41000000 INFO @ Tue, 16 Jun 2020 09:38:25: 37000000 INFO @ Tue, 16 Jun 2020 09:38:25: 31000000 INFO @ Tue, 16 Jun 2020 09:38:25: 42000000 INFO @ Tue, 16 Jun 2020 09:38:31: 38000000 INFO @ Tue, 16 Jun 2020 09:38:31: 32000000 INFO @ Tue, 16 Jun 2020 09:38:31: 43000000 INFO @ Tue, 16 Jun 2020 09:38:37: 39000000 INFO @ Tue, 16 Jun 2020 09:38:38: 44000000 INFO @ Tue, 16 Jun 2020 09:38:38: 33000000 INFO @ Tue, 16 Jun 2020 09:38:43: 40000000 INFO @ Tue, 16 Jun 2020 09:38:44: 45000000 INFO @ Tue, 16 Jun 2020 09:38:44: 34000000 INFO @ Tue, 16 Jun 2020 09:38:49: 41000000 INFO @ Tue, 16 Jun 2020 09:38:50: 46000000 INFO @ Tue, 16 Jun 2020 09:38:50: 35000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 09:38:55: 42000000 INFO @ Tue, 16 Jun 2020 09:38:56: 47000000 INFO @ Tue, 16 Jun 2020 09:38:57: 36000000 INFO @ Tue, 16 Jun 2020 09:39:01: 43000000 INFO @ Tue, 16 Jun 2020 09:39:02: 48000000 INFO @ Tue, 16 Jun 2020 09:39:03: 37000000 INFO @ Tue, 16 Jun 2020 09:39:08: 44000000 INFO @ Tue, 16 Jun 2020 09:39:09: 49000000 INFO @ Tue, 16 Jun 2020 09:39:09: 38000000 INFO @ Tue, 16 Jun 2020 09:39:14: 45000000 INFO @ Tue, 16 Jun 2020 09:39:14: 50000000 INFO @ Tue, 16 Jun 2020 09:39:15: 39000000 INFO @ Tue, 16 Jun 2020 09:39:17: #1 tag size is determined as 51 bps INFO @ Tue, 16 Jun 2020 09:39:17: #1 tag size = 51 INFO @ Tue, 16 Jun 2020 09:39:17: #1 total tags in treatment: 24359940 INFO @ Tue, 16 Jun 2020 09:39:17: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 09:39:17: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 09:39:18: #1 tags after filtering in treatment: 20714203 INFO @ Tue, 16 Jun 2020 09:39:18: #1 Redundant rate of treatment: 0.15 INFO @ Tue, 16 Jun 2020 09:39:18: #1 finished! INFO @ Tue, 16 Jun 2020 09:39:18: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 09:39:18: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 09:39:19: #2 number of paired peaks: 131 WARNING @ Tue, 16 Jun 2020 09:39:19: Fewer paired peaks (131) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 131 pairs to build model! INFO @ Tue, 16 Jun 2020 09:39:19: start model_add_line... INFO @ Tue, 16 Jun 2020 09:39:19: start X-correlation... INFO @ Tue, 16 Jun 2020 09:39:19: end of X-cor INFO @ Tue, 16 Jun 2020 09:39:19: #2 finished! INFO @ Tue, 16 Jun 2020 09:39:19: #2 predicted fragment length is 57 bps INFO @ Tue, 16 Jun 2020 09:39:19: #2 alternative fragment length(s) may be 2,57 bps INFO @ Tue, 16 Jun 2020 09:39:19: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4085340/SRX4085340.05_model.r WARNING @ Tue, 16 Jun 2020 09:39:19: #2 Since the d (57) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 09:39:19: #2 You may need to consider one of the other alternative d(s): 2,57 WARNING @ Tue, 16 Jun 2020 09:39:19: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 09:39:19: #3 Call peaks... INFO @ Tue, 16 Jun 2020 09:39:19: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 09:39:20: 46000000 INFO @ Tue, 16 Jun 2020 09:39:22: 40000000 INFO @ Tue, 16 Jun 2020 09:39:26: 47000000 INFO @ Tue, 16 Jun 2020 09:39:28: 41000000 INFO @ Tue, 16 Jun 2020 09:39:32: 48000000 INFO @ Tue, 16 Jun 2020 09:39:34: 42000000 INFO @ Tue, 16 Jun 2020 09:39:38: 49000000 INFO @ Tue, 16 Jun 2020 09:39:40: 43000000 INFO @ Tue, 16 Jun 2020 09:39:43: 50000000 INFO @ Tue, 16 Jun 2020 09:39:46: 44000000 INFO @ Tue, 16 Jun 2020 09:39:46: #1 tag size is determined as 51 bps INFO @ Tue, 16 Jun 2020 09:39:46: #1 tag size = 51 INFO @ Tue, 16 Jun 2020 09:39:46: #1 total tags in treatment: 24359940 INFO @ Tue, 16 Jun 2020 09:39:46: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 09:39:46: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 09:39:47: #1 tags after filtering in treatment: 20714203 INFO @ Tue, 16 Jun 2020 09:39:47: #1 Redundant rate of treatment: 0.15 INFO @ Tue, 16 Jun 2020 09:39:47: #1 finished! INFO @ Tue, 16 Jun 2020 09:39:47: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 09:39:47: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 09:39:48: #2 number of paired peaks: 131 WARNING @ Tue, 16 Jun 2020 09:39:48: Fewer paired peaks (131) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 131 pairs to build model! INFO @ Tue, 16 Jun 2020 09:39:48: start model_add_line... INFO @ Tue, 16 Jun 2020 09:39:48: start X-correlation... INFO @ Tue, 16 Jun 2020 09:39:48: end of X-cor INFO @ Tue, 16 Jun 2020 09:39:48: #2 finished! INFO @ Tue, 16 Jun 2020 09:39:48: #2 predicted fragment length is 57 bps INFO @ Tue, 16 Jun 2020 09:39:48: #2 alternative fragment length(s) may be 2,57 bps INFO @ Tue, 16 Jun 2020 09:39:48: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4085340/SRX4085340.10_model.r WARNING @ Tue, 16 Jun 2020 09:39:48: #2 Since the d (57) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 09:39:48: #2 You may need to consider one of the other alternative d(s): 2,57 WARNING @ Tue, 16 Jun 2020 09:39:48: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 09:39:48: #3 Call peaks... INFO @ Tue, 16 Jun 2020 09:39:48: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 09:39:52: 45000000 INFO @ Tue, 16 Jun 2020 09:39:55: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 09:39:57: 46000000 INFO @ Tue, 16 Jun 2020 09:40:03: 47000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 09:40:08: 48000000 INFO @ Tue, 16 Jun 2020 09:40:11: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4085340/SRX4085340.05_peaks.xls INFO @ Tue, 16 Jun 2020 09:40:11: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4085340/SRX4085340.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 09:40:11: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4085340/SRX4085340.05_summits.bed INFO @ Tue, 16 Jun 2020 09:40:11: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (872 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 09:40:14: 49000000 INFO @ Tue, 16 Jun 2020 09:40:19: 50000000 INFO @ Tue, 16 Jun 2020 09:40:22: #1 tag size is determined as 51 bps INFO @ Tue, 16 Jun 2020 09:40:22: #1 tag size = 51 INFO @ Tue, 16 Jun 2020 09:40:22: #1 total tags in treatment: 24359940 INFO @ Tue, 16 Jun 2020 09:40:22: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 09:40:22: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 09:40:22: #1 tags after filtering in treatment: 20714203 INFO @ Tue, 16 Jun 2020 09:40:22: #1 Redundant rate of treatment: 0.15 INFO @ Tue, 16 Jun 2020 09:40:22: #1 finished! INFO @ Tue, 16 Jun 2020 09:40:22: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 09:40:22: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 09:40:23: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 09:40:24: #2 number of paired peaks: 131 WARNING @ Tue, 16 Jun 2020 09:40:24: Fewer paired peaks (131) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 131 pairs to build model! INFO @ Tue, 16 Jun 2020 09:40:24: start model_add_line... INFO @ Tue, 16 Jun 2020 09:40:24: start X-correlation... INFO @ Tue, 16 Jun 2020 09:40:24: end of X-cor INFO @ Tue, 16 Jun 2020 09:40:24: #2 finished! INFO @ Tue, 16 Jun 2020 09:40:24: #2 predicted fragment length is 57 bps INFO @ Tue, 16 Jun 2020 09:40:24: #2 alternative fragment length(s) may be 2,57 bps INFO @ Tue, 16 Jun 2020 09:40:24: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4085340/SRX4085340.20_model.r WARNING @ Tue, 16 Jun 2020 09:40:24: #2 Since the d (57) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 09:40:24: #2 You may need to consider one of the other alternative d(s): 2,57 WARNING @ Tue, 16 Jun 2020 09:40:24: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 09:40:24: #3 Call peaks... INFO @ Tue, 16 Jun 2020 09:40:24: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 09:40:40: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4085340/SRX4085340.10_peaks.xls INFO @ Tue, 16 Jun 2020 09:40:40: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4085340/SRX4085340.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 09:40:40: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4085340/SRX4085340.10_summits.bed INFO @ Tue, 16 Jun 2020 09:40:40: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (444 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 09:40:59: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 09:41:16: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4085340/SRX4085340.20_peaks.xls INFO @ Tue, 16 Jun 2020 09:41:16: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4085340/SRX4085340.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 09:41:16: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4085340/SRX4085340.20_summits.bed INFO @ Tue, 16 Jun 2020 09:41:16: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (131 records, 4 fields): 1 millis CompletedMACS2peakCalling