Job ID = 12265573 SRX = SRX4082392 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:10:51 100971998 reads; of these: 100971998 (100.00%) were paired; of these: 5799540 (5.74%) aligned concordantly 0 times 89608026 (88.75%) aligned concordantly exactly 1 time 5564432 (5.51%) aligned concordantly >1 times ---- 5799540 pairs aligned concordantly 0 times; of these: 954680 (16.46%) aligned discordantly 1 time ---- 4844860 pairs aligned 0 times concordantly or discordantly; of these: 9689720 mates make up the pairs; of these: 8464294 (87.35%) aligned 0 times 960543 (9.91%) aligned exactly 1 time 264883 (2.73%) aligned >1 times 95.81% overall alignment rate Time searching: 01:10:51 Overall time: 01:10:51 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 80 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 66954162 / 94380157 = 0.7094 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:23:44: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4082392/SRX4082392.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4082392/SRX4082392.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4082392/SRX4082392.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4082392/SRX4082392.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:23:44: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:23:44: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:23:51: 1000000 INFO @ Sat, 03 Apr 2021 09:23:57: 2000000 INFO @ Sat, 03 Apr 2021 09:24:04: 3000000 INFO @ Sat, 03 Apr 2021 09:24:11: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:24:14: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4082392/SRX4082392.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4082392/SRX4082392.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4082392/SRX4082392.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4082392/SRX4082392.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:24:14: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:24:14: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:24:18: 5000000 INFO @ Sat, 03 Apr 2021 09:24:22: 1000000 INFO @ Sat, 03 Apr 2021 09:24:25: 6000000 INFO @ Sat, 03 Apr 2021 09:24:28: 2000000 INFO @ Sat, 03 Apr 2021 09:24:32: 7000000 INFO @ Sat, 03 Apr 2021 09:24:35: 3000000 INFO @ Sat, 03 Apr 2021 09:24:38: 8000000 INFO @ Sat, 03 Apr 2021 09:24:41: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:24:44: 9000000 INFO @ Sat, 03 Apr 2021 09:24:46: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4082392/SRX4082392.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4082392/SRX4082392.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4082392/SRX4082392.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4082392/SRX4082392.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:24:46: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:24:46: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:24:48: 5000000 INFO @ Sat, 03 Apr 2021 09:24:51: 10000000 INFO @ Sat, 03 Apr 2021 09:24:53: 1000000 INFO @ Sat, 03 Apr 2021 09:24:55: 6000000 INFO @ Sat, 03 Apr 2021 09:24:57: 11000000 INFO @ Sat, 03 Apr 2021 09:25:00: 2000000 INFO @ Sat, 03 Apr 2021 09:25:02: 7000000 INFO @ Sat, 03 Apr 2021 09:25:03: 12000000 INFO @ Sat, 03 Apr 2021 09:25:06: 3000000 INFO @ Sat, 03 Apr 2021 09:25:09: 8000000 INFO @ Sat, 03 Apr 2021 09:25:10: 13000000 INFO @ Sat, 03 Apr 2021 09:25:13: 4000000 INFO @ Sat, 03 Apr 2021 09:25:16: 14000000 INFO @ Sat, 03 Apr 2021 09:25:16: 9000000 INFO @ Sat, 03 Apr 2021 09:25:20: 5000000 INFO @ Sat, 03 Apr 2021 09:25:22: 15000000 INFO @ Sat, 03 Apr 2021 09:25:23: 10000000 INFO @ Sat, 03 Apr 2021 09:25:27: 6000000 INFO @ Sat, 03 Apr 2021 09:25:28: 16000000 INFO @ Sat, 03 Apr 2021 09:25:29: 11000000 INFO @ Sat, 03 Apr 2021 09:25:34: 7000000 INFO @ Sat, 03 Apr 2021 09:25:34: 17000000 INFO @ Sat, 03 Apr 2021 09:25:36: 12000000 INFO @ Sat, 03 Apr 2021 09:25:40: 8000000 INFO @ Sat, 03 Apr 2021 09:25:41: 18000000 INFO @ Sat, 03 Apr 2021 09:25:43: 13000000 INFO @ Sat, 03 Apr 2021 09:25:47: 9000000 INFO @ Sat, 03 Apr 2021 09:25:47: 19000000 INFO @ Sat, 03 Apr 2021 09:25:49: 14000000 INFO @ Sat, 03 Apr 2021 09:25:54: 20000000 INFO @ Sat, 03 Apr 2021 09:25:54: 10000000 INFO @ Sat, 03 Apr 2021 09:25:56: 15000000 INFO @ Sat, 03 Apr 2021 09:26:01: 21000000 INFO @ Sat, 03 Apr 2021 09:26:02: 11000000 INFO @ Sat, 03 Apr 2021 09:26:04: 16000000 INFO @ Sat, 03 Apr 2021 09:26:09: 12000000 INFO @ Sat, 03 Apr 2021 09:26:09: 22000000 INFO @ Sat, 03 Apr 2021 09:26:11: 17000000 INFO @ Sat, 03 Apr 2021 09:26:16: 13000000 INFO @ Sat, 03 Apr 2021 09:26:17: 23000000 INFO @ Sat, 03 Apr 2021 09:26:19: 18000000 INFO @ Sat, 03 Apr 2021 09:26:23: 14000000 INFO @ Sat, 03 Apr 2021 09:26:25: 24000000 INFO @ Sat, 03 Apr 2021 09:26:26: 19000000 INFO @ Sat, 03 Apr 2021 09:26:30: 15000000 INFO @ Sat, 03 Apr 2021 09:26:32: 25000000 INFO @ Sat, 03 Apr 2021 09:26:34: 20000000 INFO @ Sat, 03 Apr 2021 09:26:38: 16000000 INFO @ Sat, 03 Apr 2021 09:26:40: 26000000 INFO @ Sat, 03 Apr 2021 09:26:42: 21000000 INFO @ Sat, 03 Apr 2021 09:26:46: 17000000 INFO @ Sat, 03 Apr 2021 09:26:48: 27000000 INFO @ Sat, 03 Apr 2021 09:26:50: 22000000 INFO @ Sat, 03 Apr 2021 09:26:54: 18000000 INFO @ Sat, 03 Apr 2021 09:26:56: 28000000 INFO @ Sat, 03 Apr 2021 09:26:58: 23000000 INFO @ Sat, 03 Apr 2021 09:27:01: 19000000 INFO @ Sat, 03 Apr 2021 09:27:04: 29000000 INFO @ Sat, 03 Apr 2021 09:27:05: 24000000 INFO @ Sat, 03 Apr 2021 09:27:09: 20000000 INFO @ Sat, 03 Apr 2021 09:27:11: 30000000 INFO @ Sat, 03 Apr 2021 09:27:13: 25000000 INFO @ Sat, 03 Apr 2021 09:27:17: 21000000 INFO @ Sat, 03 Apr 2021 09:27:18: 31000000 INFO @ Sat, 03 Apr 2021 09:27:21: 26000000 INFO @ Sat, 03 Apr 2021 09:27:24: 22000000 INFO @ Sat, 03 Apr 2021 09:27:25: 32000000 INFO @ Sat, 03 Apr 2021 09:27:28: 27000000 INFO @ Sat, 03 Apr 2021 09:27:31: 23000000 INFO @ Sat, 03 Apr 2021 09:27:32: 33000000 INFO @ Sat, 03 Apr 2021 09:27:35: 28000000 INFO @ Sat, 03 Apr 2021 09:27:38: 24000000 INFO @ Sat, 03 Apr 2021 09:27:40: 34000000 INFO @ Sat, 03 Apr 2021 09:27:43: 29000000 INFO @ Sat, 03 Apr 2021 09:27:46: 25000000 INFO @ Sat, 03 Apr 2021 09:27:47: 35000000 INFO @ Sat, 03 Apr 2021 09:27:50: 30000000 INFO @ Sat, 03 Apr 2021 09:27:53: 26000000 INFO @ Sat, 03 Apr 2021 09:27:54: 36000000 INFO @ Sat, 03 Apr 2021 09:27:57: 31000000 INFO @ Sat, 03 Apr 2021 09:28:01: 27000000 INFO @ Sat, 03 Apr 2021 09:28:01: 37000000 INFO @ Sat, 03 Apr 2021 09:28:04: 32000000 INFO @ Sat, 03 Apr 2021 09:28:08: 28000000 INFO @ Sat, 03 Apr 2021 09:28:08: 38000000 INFO @ Sat, 03 Apr 2021 09:28:12: 33000000 INFO @ Sat, 03 Apr 2021 09:28:15: 39000000 INFO @ Sat, 03 Apr 2021 09:28:15: 29000000 INFO @ Sat, 03 Apr 2021 09:28:19: 34000000 INFO @ Sat, 03 Apr 2021 09:28:22: 40000000 INFO @ Sat, 03 Apr 2021 09:28:22: 30000000 INFO @ Sat, 03 Apr 2021 09:28:26: 35000000 INFO @ Sat, 03 Apr 2021 09:28:29: 41000000 INFO @ Sat, 03 Apr 2021 09:28:30: 31000000 INFO @ Sat, 03 Apr 2021 09:28:33: 36000000 INFO @ Sat, 03 Apr 2021 09:28:38: 32000000 INFO @ Sat, 03 Apr 2021 09:28:39: 42000000 INFO @ Sat, 03 Apr 2021 09:28:40: 37000000 INFO @ Sat, 03 Apr 2021 09:28:47: 38000000 INFO @ Sat, 03 Apr 2021 09:28:47: 33000000 INFO @ Sat, 03 Apr 2021 09:28:48: 43000000 INFO @ Sat, 03 Apr 2021 09:28:54: 39000000 INFO @ Sat, 03 Apr 2021 09:28:55: 34000000 INFO @ Sat, 03 Apr 2021 09:28:57: 44000000 INFO @ Sat, 03 Apr 2021 09:29:01: 40000000 INFO @ Sat, 03 Apr 2021 09:29:02: 35000000 INFO @ Sat, 03 Apr 2021 09:29:06: 45000000 INFO @ Sat, 03 Apr 2021 09:29:08: 41000000 INFO @ Sat, 03 Apr 2021 09:29:09: 36000000 INFO @ Sat, 03 Apr 2021 09:29:16: 46000000 INFO @ Sat, 03 Apr 2021 09:29:16: 42000000 INFO @ Sat, 03 Apr 2021 09:29:17: 37000000 INFO @ Sat, 03 Apr 2021 09:29:23: 43000000 INFO @ Sat, 03 Apr 2021 09:29:24: 38000000 INFO @ Sat, 03 Apr 2021 09:29:25: 47000000 INFO @ Sat, 03 Apr 2021 09:29:30: 44000000 INFO @ Sat, 03 Apr 2021 09:29:31: 39000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 09:29:34: 48000000 INFO @ Sat, 03 Apr 2021 09:29:37: 45000000 INFO @ Sat, 03 Apr 2021 09:29:38: 40000000 INFO @ Sat, 03 Apr 2021 09:29:43: 49000000 INFO @ Sat, 03 Apr 2021 09:29:44: 46000000 INFO @ Sat, 03 Apr 2021 09:29:45: 41000000 INFO @ Sat, 03 Apr 2021 09:29:51: 47000000 INFO @ Sat, 03 Apr 2021 09:29:52: 42000000 INFO @ Sat, 03 Apr 2021 09:29:52: 50000000 INFO @ Sat, 03 Apr 2021 09:29:58: 48000000 INFO @ Sat, 03 Apr 2021 09:29:59: 43000000 INFO @ Sat, 03 Apr 2021 09:30:02: 51000000 INFO @ Sat, 03 Apr 2021 09:30:05: 49000000 INFO @ Sat, 03 Apr 2021 09:30:06: 44000000 INFO @ Sat, 03 Apr 2021 09:30:10: 52000000 INFO @ Sat, 03 Apr 2021 09:30:13: 50000000 INFO @ Sat, 03 Apr 2021 09:30:13: 45000000 INFO @ Sat, 03 Apr 2021 09:30:18: 53000000 INFO @ Sat, 03 Apr 2021 09:30:20: 51000000 INFO @ Sat, 03 Apr 2021 09:30:21: 46000000 INFO @ Sat, 03 Apr 2021 09:30:26: 54000000 INFO @ Sat, 03 Apr 2021 09:30:28: 47000000 INFO @ Sat, 03 Apr 2021 09:30:28: 52000000 INFO @ Sat, 03 Apr 2021 09:30:34: 55000000 INFO @ Sat, 03 Apr 2021 09:30:35: 48000000 INFO @ Sat, 03 Apr 2021 09:30:35: 53000000 INFO @ Sat, 03 Apr 2021 09:30:42: 49000000 INFO @ Sat, 03 Apr 2021 09:30:42: 56000000 INFO @ Sat, 03 Apr 2021 09:30:43: 54000000 INFO @ Sat, 03 Apr 2021 09:30:50: 50000000 INFO @ Sat, 03 Apr 2021 09:30:50: 55000000 INFO @ Sat, 03 Apr 2021 09:30:52: 57000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 09:30:57: 51000000 INFO @ Sat, 03 Apr 2021 09:30:57: 56000000 INFO @ Sat, 03 Apr 2021 09:31:00: 58000000 INFO @ Sat, 03 Apr 2021 09:31:05: 52000000 INFO @ Sat, 03 Apr 2021 09:31:05: 57000000 INFO @ Sat, 03 Apr 2021 09:31:09: 59000000 INFO @ Sat, 03 Apr 2021 09:31:12: 53000000 INFO @ Sat, 03 Apr 2021 09:31:12: 58000000 INFO @ Sat, 03 Apr 2021 09:31:15: #1 tag size is determined as 44 bps INFO @ Sat, 03 Apr 2021 09:31:15: #1 tag size = 44 INFO @ Sat, 03 Apr 2021 09:31:15: #1 total tags in treatment: 28512664 INFO @ Sat, 03 Apr 2021 09:31:15: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:31:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:31:16: #1 tags after filtering in treatment: 16696775 INFO @ Sat, 03 Apr 2021 09:31:16: #1 Redundant rate of treatment: 0.41 INFO @ Sat, 03 Apr 2021 09:31:16: #1 finished! INFO @ Sat, 03 Apr 2021 09:31:16: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:31:16: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:31:17: #2 number of paired peaks: 191 WARNING @ Sat, 03 Apr 2021 09:31:17: Fewer paired peaks (191) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 191 pairs to build model! INFO @ Sat, 03 Apr 2021 09:31:17: start model_add_line... INFO @ Sat, 03 Apr 2021 09:31:17: start X-correlation... INFO @ Sat, 03 Apr 2021 09:31:17: end of X-cor INFO @ Sat, 03 Apr 2021 09:31:17: #2 finished! INFO @ Sat, 03 Apr 2021 09:31:17: #2 predicted fragment length is 79 bps INFO @ Sat, 03 Apr 2021 09:31:17: #2 alternative fragment length(s) may be 4,79,594 bps INFO @ Sat, 03 Apr 2021 09:31:17: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4082392/SRX4082392.05_model.r WARNING @ Sat, 03 Apr 2021 09:31:17: #2 Since the d (79) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:31:17: #2 You may need to consider one of the other alternative d(s): 4,79,594 WARNING @ Sat, 03 Apr 2021 09:31:17: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:31:17: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:31:17: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:31:18: 54000000 INFO @ Sat, 03 Apr 2021 09:31:19: 59000000 INFO @ Sat, 03 Apr 2021 09:31:23: #1 tag size is determined as 44 bps INFO @ Sat, 03 Apr 2021 09:31:23: #1 tag size = 44 INFO @ Sat, 03 Apr 2021 09:31:23: #1 total tags in treatment: 28512664 INFO @ Sat, 03 Apr 2021 09:31:23: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:31:23: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:31:24: #1 tags after filtering in treatment: 16696775 INFO @ Sat, 03 Apr 2021 09:31:24: #1 Redundant rate of treatment: 0.41 INFO @ Sat, 03 Apr 2021 09:31:24: #1 finished! INFO @ Sat, 03 Apr 2021 09:31:24: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:31:24: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:31:25: #2 number of paired peaks: 191 WARNING @ Sat, 03 Apr 2021 09:31:25: Fewer paired peaks (191) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 191 pairs to build model! INFO @ Sat, 03 Apr 2021 09:31:25: start model_add_line... INFO @ Sat, 03 Apr 2021 09:31:25: start X-correlation... INFO @ Sat, 03 Apr 2021 09:31:25: end of X-cor INFO @ Sat, 03 Apr 2021 09:31:25: #2 finished! INFO @ Sat, 03 Apr 2021 09:31:25: #2 predicted fragment length is 79 bps INFO @ Sat, 03 Apr 2021 09:31:25: #2 alternative fragment length(s) may be 4,79,594 bps INFO @ Sat, 03 Apr 2021 09:31:25: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4082392/SRX4082392.10_model.r WARNING @ Sat, 03 Apr 2021 09:31:25: #2 Since the d (79) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:31:25: #2 You may need to consider one of the other alternative d(s): 4,79,594 WARNING @ Sat, 03 Apr 2021 09:31:25: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:31:25: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:31:25: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:31:25: 55000000 INFO @ Sat, 03 Apr 2021 09:31:32: 56000000 INFO @ Sat, 03 Apr 2021 09:31:38: 57000000 INFO @ Sat, 03 Apr 2021 09:31:45: 58000000 INFO @ Sat, 03 Apr 2021 09:31:50: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:31:52: 59000000 INFO @ Sat, 03 Apr 2021 09:31:56: #1 tag size is determined as 44 bps INFO @ Sat, 03 Apr 2021 09:31:56: #1 tag size = 44 INFO @ Sat, 03 Apr 2021 09:31:56: #1 total tags in treatment: 28512664 INFO @ Sat, 03 Apr 2021 09:31:56: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:31:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:31:56: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:31:56: #1 tags after filtering in treatment: 16696775 INFO @ Sat, 03 Apr 2021 09:31:56: #1 Redundant rate of treatment: 0.41 INFO @ Sat, 03 Apr 2021 09:31:56: #1 finished! INFO @ Sat, 03 Apr 2021 09:31:56: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:31:56: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:31:58: #2 number of paired peaks: 191 WARNING @ Sat, 03 Apr 2021 09:31:58: Fewer paired peaks (191) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 191 pairs to build model! INFO @ Sat, 03 Apr 2021 09:31:58: start model_add_line... INFO @ Sat, 03 Apr 2021 09:31:58: start X-correlation... INFO @ Sat, 03 Apr 2021 09:31:58: end of X-cor INFO @ Sat, 03 Apr 2021 09:31:58: #2 finished! INFO @ Sat, 03 Apr 2021 09:31:58: #2 predicted fragment length is 79 bps INFO @ Sat, 03 Apr 2021 09:31:58: #2 alternative fragment length(s) may be 4,79,594 bps INFO @ Sat, 03 Apr 2021 09:31:58: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4082392/SRX4082392.20_model.r WARNING @ Sat, 03 Apr 2021 09:31:58: #2 Since the d (79) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:31:58: #2 You may need to consider one of the other alternative d(s): 4,79,594 WARNING @ Sat, 03 Apr 2021 09:31:58: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:31:58: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:31:58: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:32:09: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4082392/SRX4082392.05_peaks.xls INFO @ Sat, 03 Apr 2021 09:32:09: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4082392/SRX4082392.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:32:09: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4082392/SRX4082392.05_summits.bed INFO @ Sat, 03 Apr 2021 09:32:09: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (10610 records, 4 fields): 17 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 09:32:15: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4082392/SRX4082392.10_peaks.xls INFO @ Sat, 03 Apr 2021 09:32:15: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4082392/SRX4082392.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:32:15: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4082392/SRX4082392.10_summits.bed INFO @ Sat, 03 Apr 2021 09:32:15: Done! pass1 - making usageList (7 chroms): 3 millis pass2 - checking and writing primary data (5957 records, 4 fields): 16 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 09:32:30: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:32:50: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4082392/SRX4082392.20_peaks.xls INFO @ Sat, 03 Apr 2021 09:32:50: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4082392/SRX4082392.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:32:50: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4082392/SRX4082392.20_summits.bed INFO @ Sat, 03 Apr 2021 09:32:50: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (2336 records, 4 fields): 4 millis CompletedMACS2peakCalling