Job ID = 12265505 SRX = SRX4082387 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:38:07 70329171 reads; of these: 70329171 (100.00%) were paired; of these: 3185955 (4.53%) aligned concordantly 0 times 61182574 (86.99%) aligned concordantly exactly 1 time 5960642 (8.48%) aligned concordantly >1 times ---- 3185955 pairs aligned concordantly 0 times; of these: 1407707 (44.18%) aligned discordantly 1 time ---- 1778248 pairs aligned 0 times concordantly or discordantly; of these: 3556496 mates make up the pairs; of these: 2264980 (63.69%) aligned 0 times 862789 (24.26%) aligned exactly 1 time 428727 (12.05%) aligned >1 times 98.39% overall alignment rate Time searching: 00:38:07 Overall time: 00:38:07 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 30518056 / 68468298 = 0.4457 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:21:33: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4082387/SRX4082387.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4082387/SRX4082387.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4082387/SRX4082387.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4082387/SRX4082387.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:21:33: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:21:33: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:21:38: 1000000 INFO @ Sat, 03 Apr 2021 08:21:42: 2000000 INFO @ Sat, 03 Apr 2021 08:21:46: 3000000 INFO @ Sat, 03 Apr 2021 08:21:51: 4000000 INFO @ Sat, 03 Apr 2021 08:21:55: 5000000 INFO @ Sat, 03 Apr 2021 08:21:59: 6000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:22:03: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4082387/SRX4082387.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4082387/SRX4082387.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4082387/SRX4082387.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4082387/SRX4082387.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:22:03: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:22:03: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:22:04: 7000000 INFO @ Sat, 03 Apr 2021 08:22:08: 1000000 INFO @ Sat, 03 Apr 2021 08:22:08: 8000000 INFO @ Sat, 03 Apr 2021 08:22:13: 2000000 INFO @ Sat, 03 Apr 2021 08:22:13: 9000000 INFO @ Sat, 03 Apr 2021 08:22:18: 10000000 INFO @ Sat, 03 Apr 2021 08:22:18: 3000000 INFO @ Sat, 03 Apr 2021 08:22:22: 11000000 INFO @ Sat, 03 Apr 2021 08:22:22: 4000000 INFO @ Sat, 03 Apr 2021 08:22:27: 12000000 INFO @ Sat, 03 Apr 2021 08:22:27: 5000000 INFO @ Sat, 03 Apr 2021 08:22:31: 13000000 INFO @ Sat, 03 Apr 2021 08:22:31: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:22:33: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4082387/SRX4082387.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4082387/SRX4082387.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4082387/SRX4082387.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4082387/SRX4082387.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:22:33: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:22:33: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:22:36: 14000000 INFO @ Sat, 03 Apr 2021 08:22:36: 7000000 INFO @ Sat, 03 Apr 2021 08:22:38: 1000000 INFO @ Sat, 03 Apr 2021 08:22:40: 15000000 INFO @ Sat, 03 Apr 2021 08:22:40: 8000000 INFO @ Sat, 03 Apr 2021 08:22:42: 2000000 INFO @ Sat, 03 Apr 2021 08:22:45: 16000000 INFO @ Sat, 03 Apr 2021 08:22:45: 9000000 INFO @ Sat, 03 Apr 2021 08:22:47: 3000000 INFO @ Sat, 03 Apr 2021 08:22:49: 17000000 INFO @ Sat, 03 Apr 2021 08:22:50: 10000000 INFO @ Sat, 03 Apr 2021 08:22:52: 4000000 INFO @ Sat, 03 Apr 2021 08:22:54: 18000000 INFO @ Sat, 03 Apr 2021 08:22:54: 11000000 INFO @ Sat, 03 Apr 2021 08:22:56: 5000000 INFO @ Sat, 03 Apr 2021 08:22:59: 19000000 INFO @ Sat, 03 Apr 2021 08:22:59: 12000000 INFO @ Sat, 03 Apr 2021 08:23:01: 6000000 INFO @ Sat, 03 Apr 2021 08:23:03: 20000000 INFO @ Sat, 03 Apr 2021 08:23:03: 13000000 INFO @ Sat, 03 Apr 2021 08:23:05: 7000000 INFO @ Sat, 03 Apr 2021 08:23:07: 21000000 INFO @ Sat, 03 Apr 2021 08:23:08: 14000000 INFO @ Sat, 03 Apr 2021 08:23:10: 8000000 INFO @ Sat, 03 Apr 2021 08:23:12: 22000000 INFO @ Sat, 03 Apr 2021 08:23:13: 15000000 INFO @ Sat, 03 Apr 2021 08:23:14: 9000000 INFO @ Sat, 03 Apr 2021 08:23:16: 23000000 INFO @ Sat, 03 Apr 2021 08:23:17: 16000000 INFO @ Sat, 03 Apr 2021 08:23:19: 10000000 INFO @ Sat, 03 Apr 2021 08:23:21: 24000000 INFO @ Sat, 03 Apr 2021 08:23:22: 17000000 INFO @ Sat, 03 Apr 2021 08:23:23: 11000000 INFO @ Sat, 03 Apr 2021 08:23:26: 25000000 INFO @ Sat, 03 Apr 2021 08:23:26: 18000000 INFO @ Sat, 03 Apr 2021 08:23:28: 12000000 INFO @ Sat, 03 Apr 2021 08:23:30: 26000000 INFO @ Sat, 03 Apr 2021 08:23:31: 19000000 INFO @ Sat, 03 Apr 2021 08:23:33: 13000000 INFO @ Sat, 03 Apr 2021 08:23:35: 27000000 INFO @ Sat, 03 Apr 2021 08:23:36: 20000000 INFO @ Sat, 03 Apr 2021 08:23:37: 14000000 INFO @ Sat, 03 Apr 2021 08:23:39: 28000000 INFO @ Sat, 03 Apr 2021 08:23:40: 21000000 INFO @ Sat, 03 Apr 2021 08:23:42: 15000000 INFO @ Sat, 03 Apr 2021 08:23:44: 29000000 INFO @ Sat, 03 Apr 2021 08:23:45: 22000000 INFO @ Sat, 03 Apr 2021 08:23:47: 16000000 INFO @ Sat, 03 Apr 2021 08:23:49: 30000000 INFO @ Sat, 03 Apr 2021 08:23:49: 23000000 INFO @ Sat, 03 Apr 2021 08:23:51: 17000000 INFO @ Sat, 03 Apr 2021 08:23:53: 31000000 INFO @ Sat, 03 Apr 2021 08:23:54: 24000000 INFO @ Sat, 03 Apr 2021 08:23:56: 18000000 INFO @ Sat, 03 Apr 2021 08:23:58: 32000000 INFO @ Sat, 03 Apr 2021 08:23:59: 25000000 INFO @ Sat, 03 Apr 2021 08:24:01: 19000000 INFO @ Sat, 03 Apr 2021 08:24:02: 33000000 INFO @ Sat, 03 Apr 2021 08:24:04: 26000000 INFO @ Sat, 03 Apr 2021 08:24:05: 20000000 INFO @ Sat, 03 Apr 2021 08:24:07: 34000000 INFO @ Sat, 03 Apr 2021 08:24:08: 27000000 INFO @ Sat, 03 Apr 2021 08:24:10: 21000000 INFO @ Sat, 03 Apr 2021 08:24:11: 35000000 INFO @ Sat, 03 Apr 2021 08:24:13: 28000000 INFO @ Sat, 03 Apr 2021 08:24:14: 22000000 INFO @ Sat, 03 Apr 2021 08:24:16: 36000000 INFO @ Sat, 03 Apr 2021 08:24:17: 29000000 INFO @ Sat, 03 Apr 2021 08:24:19: 23000000 INFO @ Sat, 03 Apr 2021 08:24:21: 37000000 INFO @ Sat, 03 Apr 2021 08:24:22: 30000000 INFO @ Sat, 03 Apr 2021 08:24:23: 24000000 INFO @ Sat, 03 Apr 2021 08:24:25: 38000000 INFO @ Sat, 03 Apr 2021 08:24:26: 31000000 INFO @ Sat, 03 Apr 2021 08:24:28: 25000000 INFO @ Sat, 03 Apr 2021 08:24:30: 39000000 INFO @ Sat, 03 Apr 2021 08:24:31: 32000000 INFO @ Sat, 03 Apr 2021 08:24:33: 26000000 INFO @ Sat, 03 Apr 2021 08:24:35: 40000000 INFO @ Sat, 03 Apr 2021 08:24:36: 33000000 INFO @ Sat, 03 Apr 2021 08:24:37: 27000000 INFO @ Sat, 03 Apr 2021 08:24:39: 41000000 INFO @ Sat, 03 Apr 2021 08:24:40: 34000000 INFO @ Sat, 03 Apr 2021 08:24:42: 28000000 INFO @ Sat, 03 Apr 2021 08:24:44: 42000000 INFO @ Sat, 03 Apr 2021 08:24:45: 35000000 INFO @ Sat, 03 Apr 2021 08:24:46: 29000000 INFO @ Sat, 03 Apr 2021 08:24:48: 43000000 INFO @ Sat, 03 Apr 2021 08:24:50: 36000000 INFO @ Sat, 03 Apr 2021 08:24:51: 30000000 INFO @ Sat, 03 Apr 2021 08:24:53: 44000000 INFO @ Sat, 03 Apr 2021 08:24:54: 37000000 INFO @ Sat, 03 Apr 2021 08:24:56: 31000000 INFO @ Sat, 03 Apr 2021 08:24:58: 45000000 INFO @ Sat, 03 Apr 2021 08:24:59: 38000000 INFO @ Sat, 03 Apr 2021 08:25:00: 32000000 INFO @ Sat, 03 Apr 2021 08:25:02: 46000000 INFO @ Sat, 03 Apr 2021 08:25:04: 39000000 INFO @ Sat, 03 Apr 2021 08:25:05: 33000000 INFO @ Sat, 03 Apr 2021 08:25:07: 47000000 INFO @ Sat, 03 Apr 2021 08:25:08: 40000000 INFO @ Sat, 03 Apr 2021 08:25:09: 34000000 INFO @ Sat, 03 Apr 2021 08:25:12: 48000000 INFO @ Sat, 03 Apr 2021 08:25:13: 41000000 INFO @ Sat, 03 Apr 2021 08:25:14: 35000000 INFO @ Sat, 03 Apr 2021 08:25:16: 49000000 INFO @ Sat, 03 Apr 2021 08:25:18: 42000000 INFO @ Sat, 03 Apr 2021 08:25:19: 36000000 INFO @ Sat, 03 Apr 2021 08:25:21: 50000000 INFO @ Sat, 03 Apr 2021 08:25:22: 43000000 INFO @ Sat, 03 Apr 2021 08:25:23: 37000000 INFO @ Sat, 03 Apr 2021 08:25:26: 51000000 INFO @ Sat, 03 Apr 2021 08:25:27: 44000000 INFO @ Sat, 03 Apr 2021 08:25:28: 38000000 INFO @ Sat, 03 Apr 2021 08:25:30: 52000000 INFO @ Sat, 03 Apr 2021 08:25:32: 45000000 INFO @ Sat, 03 Apr 2021 08:25:33: 39000000 INFO @ Sat, 03 Apr 2021 08:25:35: 53000000 INFO @ Sat, 03 Apr 2021 08:25:36: 46000000 INFO @ Sat, 03 Apr 2021 08:25:37: 40000000 INFO @ Sat, 03 Apr 2021 08:25:39: 54000000 INFO @ Sat, 03 Apr 2021 08:25:41: 47000000 INFO @ Sat, 03 Apr 2021 08:25:42: 41000000 INFO @ Sat, 03 Apr 2021 08:25:44: 55000000 INFO @ Sat, 03 Apr 2021 08:25:46: 48000000 INFO @ Sat, 03 Apr 2021 08:25:46: 42000000 INFO @ Sat, 03 Apr 2021 08:25:49: 56000000 INFO @ Sat, 03 Apr 2021 08:25:50: 49000000 INFO @ Sat, 03 Apr 2021 08:25:51: 43000000 INFO @ Sat, 03 Apr 2021 08:25:53: 57000000 INFO @ Sat, 03 Apr 2021 08:25:55: 50000000 INFO @ Sat, 03 Apr 2021 08:25:56: 44000000 INFO @ Sat, 03 Apr 2021 08:25:58: 58000000 INFO @ Sat, 03 Apr 2021 08:26:00: 51000000 INFO @ Sat, 03 Apr 2021 08:26:00: 45000000 INFO @ Sat, 03 Apr 2021 08:26:02: 59000000 INFO @ Sat, 03 Apr 2021 08:26:04: 52000000 INFO @ Sat, 03 Apr 2021 08:26:05: 46000000 INFO @ Sat, 03 Apr 2021 08:26:07: 60000000 INFO @ Sat, 03 Apr 2021 08:26:09: 53000000 INFO @ Sat, 03 Apr 2021 08:26:10: 47000000 INFO @ Sat, 03 Apr 2021 08:26:11: 61000000 INFO @ Sat, 03 Apr 2021 08:26:14: 54000000 INFO @ Sat, 03 Apr 2021 08:26:14: 48000000 INFO @ Sat, 03 Apr 2021 08:26:16: 62000000 INFO @ Sat, 03 Apr 2021 08:26:18: 55000000 INFO @ Sat, 03 Apr 2021 08:26:19: 49000000 INFO @ Sat, 03 Apr 2021 08:26:20: 63000000 INFO @ Sat, 03 Apr 2021 08:26:23: 56000000 INFO @ Sat, 03 Apr 2021 08:26:23: 50000000 INFO @ Sat, 03 Apr 2021 08:26:25: 64000000 INFO @ Sat, 03 Apr 2021 08:26:27: 57000000 INFO @ Sat, 03 Apr 2021 08:26:28: 51000000 INFO @ Sat, 03 Apr 2021 08:26:29: 65000000 INFO @ Sat, 03 Apr 2021 08:26:32: 58000000 INFO @ Sat, 03 Apr 2021 08:26:33: 52000000 INFO @ Sat, 03 Apr 2021 08:26:34: 66000000 INFO @ Sat, 03 Apr 2021 08:26:37: 59000000 INFO @ Sat, 03 Apr 2021 08:26:37: 53000000 INFO @ Sat, 03 Apr 2021 08:26:39: 67000000 INFO @ Sat, 03 Apr 2021 08:26:41: 60000000 INFO @ Sat, 03 Apr 2021 08:26:42: 54000000 INFO @ Sat, 03 Apr 2021 08:26:43: 68000000 INFO @ Sat, 03 Apr 2021 08:26:46: 61000000 INFO @ Sat, 03 Apr 2021 08:26:47: 55000000 INFO @ Sat, 03 Apr 2021 08:26:48: 69000000 INFO @ Sat, 03 Apr 2021 08:26:51: 62000000 INFO @ Sat, 03 Apr 2021 08:26:51: 56000000 INFO @ Sat, 03 Apr 2021 08:26:52: 70000000 INFO @ Sat, 03 Apr 2021 08:26:55: 63000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 08:26:56: 57000000 INFO @ Sat, 03 Apr 2021 08:26:57: 71000000 INFO @ Sat, 03 Apr 2021 08:27:00: 64000000 INFO @ Sat, 03 Apr 2021 08:27:00: 58000000 INFO @ Sat, 03 Apr 2021 08:27:02: 72000000 INFO @ Sat, 03 Apr 2021 08:27:04: 65000000 INFO @ Sat, 03 Apr 2021 08:27:05: 59000000 INFO @ Sat, 03 Apr 2021 08:27:06: 73000000 INFO @ Sat, 03 Apr 2021 08:27:09: 66000000 INFO @ Sat, 03 Apr 2021 08:27:09: 60000000 INFO @ Sat, 03 Apr 2021 08:27:11: 74000000 INFO @ Sat, 03 Apr 2021 08:27:13: 67000000 INFO @ Sat, 03 Apr 2021 08:27:14: 61000000 INFO @ Sat, 03 Apr 2021 08:27:15: 75000000 INFO @ Sat, 03 Apr 2021 08:27:18: 68000000 INFO @ Sat, 03 Apr 2021 08:27:18: 62000000 INFO @ Sat, 03 Apr 2021 08:27:19: 76000000 INFO @ Sat, 03 Apr 2021 08:27:23: 69000000 INFO @ Sat, 03 Apr 2021 08:27:23: 63000000 INFO @ Sat, 03 Apr 2021 08:27:24: 77000000 INFO @ Sat, 03 Apr 2021 08:27:26: #1 tag size is determined as 32 bps INFO @ Sat, 03 Apr 2021 08:27:26: #1 tag size = 32 INFO @ Sat, 03 Apr 2021 08:27:26: #1 total tags in treatment: 36763775 INFO @ Sat, 03 Apr 2021 08:27:26: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:27:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:27:27: #1 tags after filtering in treatment: 19920120 INFO @ Sat, 03 Apr 2021 08:27:27: #1 Redundant rate of treatment: 0.46 INFO @ Sat, 03 Apr 2021 08:27:27: #1 finished! INFO @ Sat, 03 Apr 2021 08:27:27: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:27:27: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:27:28: 70000000 INFO @ Sat, 03 Apr 2021 08:27:28: 64000000 INFO @ Sat, 03 Apr 2021 08:27:28: #2 number of paired peaks: 234 WARNING @ Sat, 03 Apr 2021 08:27:28: Fewer paired peaks (234) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 234 pairs to build model! INFO @ Sat, 03 Apr 2021 08:27:28: start model_add_line... INFO @ Sat, 03 Apr 2021 08:27:28: start X-correlation... INFO @ Sat, 03 Apr 2021 08:27:28: end of X-cor INFO @ Sat, 03 Apr 2021 08:27:28: #2 finished! INFO @ Sat, 03 Apr 2021 08:27:28: #2 predicted fragment length is 100 bps INFO @ Sat, 03 Apr 2021 08:27:28: #2 alternative fragment length(s) may be 100 bps INFO @ Sat, 03 Apr 2021 08:27:28: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4082387/SRX4082387.05_model.r INFO @ Sat, 03 Apr 2021 08:27:28: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:27:28: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:27:32: 71000000 INFO @ Sat, 03 Apr 2021 08:27:32: 65000000 INFO @ Sat, 03 Apr 2021 08:27:37: 72000000 INFO @ Sat, 03 Apr 2021 08:27:37: 66000000 INFO @ Sat, 03 Apr 2021 08:27:42: 67000000 INFO @ Sat, 03 Apr 2021 08:27:42: 73000000 INFO @ Sat, 03 Apr 2021 08:27:46: 74000000 INFO @ Sat, 03 Apr 2021 08:27:46: 68000000 INFO @ Sat, 03 Apr 2021 08:27:51: 75000000 INFO @ Sat, 03 Apr 2021 08:27:51: 69000000 INFO @ Sat, 03 Apr 2021 08:27:55: 76000000 INFO @ Sat, 03 Apr 2021 08:27:56: 70000000 INFO @ Sat, 03 Apr 2021 08:28:00: 77000000 INFO @ Sat, 03 Apr 2021 08:28:00: 71000000 INFO @ Sat, 03 Apr 2021 08:28:02: #1 tag size is determined as 32 bps INFO @ Sat, 03 Apr 2021 08:28:02: #1 tag size = 32 INFO @ Sat, 03 Apr 2021 08:28:02: #1 total tags in treatment: 36763775 INFO @ Sat, 03 Apr 2021 08:28:02: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:28:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:28:03: #1 tags after filtering in treatment: 19920120 INFO @ Sat, 03 Apr 2021 08:28:03: #1 Redundant rate of treatment: 0.46 INFO @ Sat, 03 Apr 2021 08:28:03: #1 finished! INFO @ Sat, 03 Apr 2021 08:28:03: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:28:03: #2 looking for paired plus/minus strand peaks... BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 08:28:04: #2 number of paired peaks: 234 WARNING @ Sat, 03 Apr 2021 08:28:04: Fewer paired peaks (234) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 234 pairs to build model! INFO @ Sat, 03 Apr 2021 08:28:04: start model_add_line... INFO @ Sat, 03 Apr 2021 08:28:04: start X-correlation... INFO @ Sat, 03 Apr 2021 08:28:04: end of X-cor INFO @ Sat, 03 Apr 2021 08:28:04: #2 finished! INFO @ Sat, 03 Apr 2021 08:28:04: #2 predicted fragment length is 100 bps INFO @ Sat, 03 Apr 2021 08:28:04: #2 alternative fragment length(s) may be 100 bps INFO @ Sat, 03 Apr 2021 08:28:04: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4082387/SRX4082387.10_model.r INFO @ Sat, 03 Apr 2021 08:28:04: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:28:04: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:28:05: 72000000 INFO @ Sat, 03 Apr 2021 08:28:09: 73000000 INFO @ Sat, 03 Apr 2021 08:28:10: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:28:14: 74000000 INFO @ Sat, 03 Apr 2021 08:28:18: 75000000 INFO @ Sat, 03 Apr 2021 08:28:22: 76000000 INFO @ Sat, 03 Apr 2021 08:28:27: 77000000 INFO @ Sat, 03 Apr 2021 08:28:29: #1 tag size is determined as 32 bps INFO @ Sat, 03 Apr 2021 08:28:29: #1 tag size = 32 INFO @ Sat, 03 Apr 2021 08:28:29: #1 total tags in treatment: 36763775 INFO @ Sat, 03 Apr 2021 08:28:29: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:28:29: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:28:29: #1 tags after filtering in treatment: 19920120 INFO @ Sat, 03 Apr 2021 08:28:29: #1 Redundant rate of treatment: 0.46 INFO @ Sat, 03 Apr 2021 08:28:29: #1 finished! INFO @ Sat, 03 Apr 2021 08:28:29: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:28:29: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:28:31: #2 number of paired peaks: 234 WARNING @ Sat, 03 Apr 2021 08:28:31: Fewer paired peaks (234) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 234 pairs to build model! INFO @ Sat, 03 Apr 2021 08:28:31: start model_add_line... INFO @ Sat, 03 Apr 2021 08:28:31: start X-correlation... INFO @ Sat, 03 Apr 2021 08:28:31: end of X-cor INFO @ Sat, 03 Apr 2021 08:28:31: #2 finished! INFO @ Sat, 03 Apr 2021 08:28:31: #2 predicted fragment length is 100 bps INFO @ Sat, 03 Apr 2021 08:28:31: #2 alternative fragment length(s) may be 100 bps INFO @ Sat, 03 Apr 2021 08:28:31: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4082387/SRX4082387.20_model.r INFO @ Sat, 03 Apr 2021 08:28:31: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:28:31: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:28:31: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4082387/SRX4082387.05_peaks.xls INFO @ Sat, 03 Apr 2021 08:28:31: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4082387/SRX4082387.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:28:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4082387/SRX4082387.05_summits.bed INFO @ Sat, 03 Apr 2021 08:28:31: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (10855 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:28:45: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:29:05: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4082387/SRX4082387.10_peaks.xls INFO @ Sat, 03 Apr 2021 08:29:05: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4082387/SRX4082387.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:29:05: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4082387/SRX4082387.10_summits.bed INFO @ Sat, 03 Apr 2021 08:29:05: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (6497 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:29:11: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:29:31: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4082387/SRX4082387.20_peaks.xls INFO @ Sat, 03 Apr 2021 08:29:31: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4082387/SRX4082387.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:29:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4082387/SRX4082387.20_summits.bed INFO @ Sat, 03 Apr 2021 08:29:31: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (3106 records, 4 fields): 5 millis CompletedMACS2peakCalling