Job ID = 6367714 SRX = SRX4012478 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-15T23:40:29 prefetch.2.10.7: 1) Downloading 'SRR7082719'... 2020-06-15T23:40:29 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:57:28 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:57:28 prefetch.2.10.7: 1) 'SRR7082719' was downloaded successfully Read 40879283 spots for SRR7082719/SRR7082719.sra Written 40879283 spots for SRR7082719/SRR7082719.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:52:19 40879283 reads; of these: 40879283 (100.00%) were paired; of these: 22766314 (55.69%) aligned concordantly 0 times 3570621 (8.73%) aligned concordantly exactly 1 time 14542348 (35.57%) aligned concordantly >1 times ---- 22766314 pairs aligned concordantly 0 times; of these: 8125093 (35.69%) aligned discordantly 1 time ---- 14641221 pairs aligned 0 times concordantly or discordantly; of these: 29282442 mates make up the pairs; of these: 11027274 (37.66%) aligned 0 times 8231110 (28.11%) aligned exactly 1 time 10024058 (34.23%) aligned >1 times 86.51% overall alignment rate Time searching: 01:52:19 Overall time: 01:52:19 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 5577650 / 19631697 = 0.2841 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:18:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4012478/SRX4012478.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4012478/SRX4012478.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4012478/SRX4012478.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4012478/SRX4012478.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:18:18: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:18:18: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:18:24: 1000000 INFO @ Tue, 16 Jun 2020 11:18:30: 2000000 INFO @ Tue, 16 Jun 2020 11:18:35: 3000000 INFO @ Tue, 16 Jun 2020 11:18:41: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:18:47: 5000000 INFO @ Tue, 16 Jun 2020 11:18:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4012478/SRX4012478.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4012478/SRX4012478.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4012478/SRX4012478.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4012478/SRX4012478.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:18:48: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:18:48: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:18:54: 6000000 INFO @ Tue, 16 Jun 2020 11:18:55: 1000000 INFO @ Tue, 16 Jun 2020 11:19:01: 7000000 INFO @ Tue, 16 Jun 2020 11:19:01: 2000000 INFO @ Tue, 16 Jun 2020 11:19:07: 8000000 INFO @ Tue, 16 Jun 2020 11:19:08: 3000000 INFO @ Tue, 16 Jun 2020 11:19:14: 9000000 INFO @ Tue, 16 Jun 2020 11:19:15: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:19:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4012478/SRX4012478.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4012478/SRX4012478.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4012478/SRX4012478.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4012478/SRX4012478.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:19:18: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:19:18: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:19:21: 10000000 INFO @ Tue, 16 Jun 2020 11:19:21: 5000000 INFO @ Tue, 16 Jun 2020 11:19:25: 1000000 INFO @ Tue, 16 Jun 2020 11:19:27: 11000000 INFO @ Tue, 16 Jun 2020 11:19:28: 6000000 INFO @ Tue, 16 Jun 2020 11:19:32: 2000000 INFO @ Tue, 16 Jun 2020 11:19:34: 12000000 INFO @ Tue, 16 Jun 2020 11:19:35: 7000000 INFO @ Tue, 16 Jun 2020 11:19:39: 3000000 INFO @ Tue, 16 Jun 2020 11:19:41: 13000000 INFO @ Tue, 16 Jun 2020 11:19:42: 8000000 INFO @ Tue, 16 Jun 2020 11:19:46: 4000000 INFO @ Tue, 16 Jun 2020 11:19:48: 14000000 INFO @ Tue, 16 Jun 2020 11:19:49: 9000000 INFO @ Tue, 16 Jun 2020 11:19:53: 5000000 INFO @ Tue, 16 Jun 2020 11:19:54: 15000000 INFO @ Tue, 16 Jun 2020 11:19:56: 10000000 INFO @ Tue, 16 Jun 2020 11:20:00: 6000000 INFO @ Tue, 16 Jun 2020 11:20:01: 16000000 INFO @ Tue, 16 Jun 2020 11:20:02: 11000000 INFO @ Tue, 16 Jun 2020 11:20:07: 7000000 INFO @ Tue, 16 Jun 2020 11:20:07: 17000000 INFO @ Tue, 16 Jun 2020 11:20:09: 12000000 INFO @ Tue, 16 Jun 2020 11:20:14: 8000000 INFO @ Tue, 16 Jun 2020 11:20:14: 18000000 INFO @ Tue, 16 Jun 2020 11:20:15: 13000000 INFO @ Tue, 16 Jun 2020 11:20:20: 9000000 INFO @ Tue, 16 Jun 2020 11:20:21: 19000000 INFO @ Tue, 16 Jun 2020 11:20:22: 14000000 INFO @ Tue, 16 Jun 2020 11:20:27: 10000000 INFO @ Tue, 16 Jun 2020 11:20:27: 20000000 INFO @ Tue, 16 Jun 2020 11:20:29: 15000000 INFO @ Tue, 16 Jun 2020 11:20:34: 11000000 INFO @ Tue, 16 Jun 2020 11:20:34: 21000000 INFO @ Tue, 16 Jun 2020 11:20:35: 16000000 INFO @ Tue, 16 Jun 2020 11:20:40: 12000000 INFO @ Tue, 16 Jun 2020 11:20:41: 22000000 INFO @ Tue, 16 Jun 2020 11:20:42: 17000000 INFO @ Tue, 16 Jun 2020 11:20:47: 13000000 INFO @ Tue, 16 Jun 2020 11:20:48: 23000000 INFO @ Tue, 16 Jun 2020 11:20:50: 18000000 INFO @ Tue, 16 Jun 2020 11:20:54: 14000000 INFO @ Tue, 16 Jun 2020 11:20:55: 24000000 INFO @ Tue, 16 Jun 2020 11:20:57: 19000000 INFO @ Tue, 16 Jun 2020 11:21:01: 15000000 INFO @ Tue, 16 Jun 2020 11:21:01: 25000000 INFO @ Tue, 16 Jun 2020 11:21:04: 20000000 INFO @ Tue, 16 Jun 2020 11:21:07: 16000000 INFO @ Tue, 16 Jun 2020 11:21:08: 26000000 INFO @ Tue, 16 Jun 2020 11:21:11: 21000000 INFO @ Tue, 16 Jun 2020 11:21:14: 17000000 INFO @ Tue, 16 Jun 2020 11:21:15: 27000000 INFO @ Tue, 16 Jun 2020 11:21:17: 22000000 INFO @ Tue, 16 Jun 2020 11:21:21: 18000000 INFO @ Tue, 16 Jun 2020 11:21:22: 28000000 INFO @ Tue, 16 Jun 2020 11:21:24: 23000000 INFO @ Tue, 16 Jun 2020 11:21:28: 19000000 INFO @ Tue, 16 Jun 2020 11:21:28: 29000000 INFO @ Tue, 16 Jun 2020 11:21:31: 24000000 INFO @ Tue, 16 Jun 2020 11:21:34: 20000000 INFO @ Tue, 16 Jun 2020 11:21:35: 30000000 INFO @ Tue, 16 Jun 2020 11:21:37: 25000000 INFO @ Tue, 16 Jun 2020 11:21:41: 21000000 INFO @ Tue, 16 Jun 2020 11:21:42: 31000000 INFO @ Tue, 16 Jun 2020 11:21:44: 26000000 INFO @ Tue, 16 Jun 2020 11:21:48: 22000000 INFO @ Tue, 16 Jun 2020 11:21:48: 32000000 INFO @ Tue, 16 Jun 2020 11:21:51: 27000000 INFO @ Tue, 16 Jun 2020 11:21:54: 23000000 INFO @ Tue, 16 Jun 2020 11:21:55: 33000000 INFO @ Tue, 16 Jun 2020 11:21:57: 28000000 INFO @ Tue, 16 Jun 2020 11:22:01: 24000000 INFO @ Tue, 16 Jun 2020 11:22:01: 34000000 INFO @ Tue, 16 Jun 2020 11:22:04: 29000000 INFO @ Tue, 16 Jun 2020 11:22:07: 25000000 INFO @ Tue, 16 Jun 2020 11:22:08: 35000000 INFO @ Tue, 16 Jun 2020 11:22:10: 30000000 INFO @ Tue, 16 Jun 2020 11:22:14: 26000000 INFO @ Tue, 16 Jun 2020 11:22:15: 36000000 INFO @ Tue, 16 Jun 2020 11:22:17: 31000000 INFO @ Tue, 16 Jun 2020 11:22:20: 27000000 INFO @ Tue, 16 Jun 2020 11:22:21: 37000000 INFO @ Tue, 16 Jun 2020 11:22:23: 32000000 INFO @ Tue, 16 Jun 2020 11:22:27: 28000000 INFO @ Tue, 16 Jun 2020 11:22:28: 38000000 INFO @ Tue, 16 Jun 2020 11:22:30: 33000000 INFO @ Tue, 16 Jun 2020 11:22:34: 29000000 INFO @ Tue, 16 Jun 2020 11:22:34: 39000000 INFO @ Tue, 16 Jun 2020 11:22:37: 34000000 INFO @ Tue, 16 Jun 2020 11:22:41: 30000000 INFO @ Tue, 16 Jun 2020 11:22:41: 40000000 INFO @ Tue, 16 Jun 2020 11:22:44: 35000000 INFO @ Tue, 16 Jun 2020 11:22:47: 31000000 INFO @ Tue, 16 Jun 2020 11:22:48: 41000000 INFO @ Tue, 16 Jun 2020 11:22:51: 36000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:22:54: 32000000 INFO @ Tue, 16 Jun 2020 11:22:55: 42000000 INFO @ Tue, 16 Jun 2020 11:22:58: 37000000 INFO @ Tue, 16 Jun 2020 11:23:01: 33000000 INFO @ Tue, 16 Jun 2020 11:23:02: 43000000 INFO @ Tue, 16 Jun 2020 11:23:04: 38000000 INFO @ Tue, 16 Jun 2020 11:23:08: 34000000 INFO @ Tue, 16 Jun 2020 11:23:09: 44000000 INFO @ Tue, 16 Jun 2020 11:23:11: 39000000 INFO @ Tue, 16 Jun 2020 11:23:15: 35000000 INFO @ Tue, 16 Jun 2020 11:23:15: 45000000 INFO @ Tue, 16 Jun 2020 11:23:18: 40000000 INFO @ Tue, 16 Jun 2020 11:23:21: 36000000 INFO @ Tue, 16 Jun 2020 11:23:22: 46000000 INFO @ Tue, 16 Jun 2020 11:23:25: 41000000 INFO @ Tue, 16 Jun 2020 11:23:28: 37000000 INFO @ Tue, 16 Jun 2020 11:23:29: 47000000 INFO @ Tue, 16 Jun 2020 11:23:32: 42000000 INFO @ Tue, 16 Jun 2020 11:23:35: 38000000 INFO @ Tue, 16 Jun 2020 11:23:36: 48000000 INFO @ Tue, 16 Jun 2020 11:23:39: 43000000 INFO @ Tue, 16 Jun 2020 11:23:41: 39000000 INFO @ Tue, 16 Jun 2020 11:23:42: 49000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:23:45: 44000000 INFO @ Tue, 16 Jun 2020 11:23:48: 40000000 INFO @ Tue, 16 Jun 2020 11:23:49: 50000000 INFO @ Tue, 16 Jun 2020 11:23:52: 45000000 INFO @ Tue, 16 Jun 2020 11:23:54: 41000000 INFO @ Tue, 16 Jun 2020 11:23:55: 51000000 INFO @ Tue, 16 Jun 2020 11:23:58: 46000000 INFO @ Tue, 16 Jun 2020 11:24:01: 42000000 INFO @ Tue, 16 Jun 2020 11:24:02: 52000000 INFO @ Tue, 16 Jun 2020 11:24:05: 47000000 INFO @ Tue, 16 Jun 2020 11:24:08: 43000000 INFO @ Tue, 16 Jun 2020 11:24:09: 53000000 INFO @ Tue, 16 Jun 2020 11:24:12: 48000000 INFO @ Tue, 16 Jun 2020 11:24:14: 44000000 INFO @ Tue, 16 Jun 2020 11:24:15: 54000000 INFO @ Tue, 16 Jun 2020 11:24:18: 49000000 INFO @ Tue, 16 Jun 2020 11:24:21: 45000000 INFO @ Tue, 16 Jun 2020 11:24:22: 55000000 INFO @ Tue, 16 Jun 2020 11:24:25: 50000000 INFO @ Tue, 16 Jun 2020 11:24:27: 46000000 INFO @ Tue, 16 Jun 2020 11:24:28: 56000000 INFO @ Tue, 16 Jun 2020 11:24:31: 51000000 INFO @ Tue, 16 Jun 2020 11:24:34: 47000000 INFO @ Tue, 16 Jun 2020 11:24:35: 57000000 INFO @ Tue, 16 Jun 2020 11:24:38: 52000000 INFO @ Tue, 16 Jun 2020 11:24:40: 48000000 INFO @ Tue, 16 Jun 2020 11:24:41: 58000000 INFO @ Tue, 16 Jun 2020 11:24:45: 53000000 INFO @ Tue, 16 Jun 2020 11:24:47: 49000000 INFO @ Tue, 16 Jun 2020 11:24:48: 59000000 INFO @ Tue, 16 Jun 2020 11:24:51: 54000000 INFO @ Tue, 16 Jun 2020 11:24:52: #1 tag size is determined as 75 bps INFO @ Tue, 16 Jun 2020 11:24:52: #1 tag size = 75 INFO @ Tue, 16 Jun 2020 11:24:52: #1 total tags in treatment: 12837044 INFO @ Tue, 16 Jun 2020 11:24:52: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:24:52: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:24:52: #1 tags after filtering in treatment: 4678423 INFO @ Tue, 16 Jun 2020 11:24:52: #1 Redundant rate of treatment: 0.64 INFO @ Tue, 16 Jun 2020 11:24:52: #1 finished! INFO @ Tue, 16 Jun 2020 11:24:52: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:24:52: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:24:53: #2 number of paired peaks: 3943 INFO @ Tue, 16 Jun 2020 11:24:53: start model_add_line... INFO @ Tue, 16 Jun 2020 11:24:53: start X-correlation... INFO @ Tue, 16 Jun 2020 11:24:53: end of X-cor INFO @ Tue, 16 Jun 2020 11:24:53: #2 finished! INFO @ Tue, 16 Jun 2020 11:24:53: #2 predicted fragment length is 209 bps INFO @ Tue, 16 Jun 2020 11:24:53: #2 alternative fragment length(s) may be 209 bps INFO @ Tue, 16 Jun 2020 11:24:53: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4012478/SRX4012478.05_model.r INFO @ Tue, 16 Jun 2020 11:24:53: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:24:53: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:24:54: 50000000 INFO @ Tue, 16 Jun 2020 11:24:58: 55000000 INFO @ Tue, 16 Jun 2020 11:25:00: 51000000 INFO @ Tue, 16 Jun 2020 11:25:04: 56000000 INFO @ Tue, 16 Jun 2020 11:25:06: 52000000 INFO @ Tue, 16 Jun 2020 11:25:09: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:25:11: 57000000 INFO @ Tue, 16 Jun 2020 11:25:13: 53000000 INFO @ Tue, 16 Jun 2020 11:25:14: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4012478/SRX4012478.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:25:14: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4012478/SRX4012478.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:25:14: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4012478/SRX4012478.05_summits.bed INFO @ Tue, 16 Jun 2020 11:25:14: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (6258 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:25:17: 58000000 INFO @ Tue, 16 Jun 2020 11:25:19: 54000000 INFO @ Tue, 16 Jun 2020 11:25:24: 59000000 INFO @ Tue, 16 Jun 2020 11:25:26: 55000000 INFO @ Tue, 16 Jun 2020 11:25:27: #1 tag size is determined as 75 bps INFO @ Tue, 16 Jun 2020 11:25:27: #1 tag size = 75 INFO @ Tue, 16 Jun 2020 11:25:27: #1 total tags in treatment: 12837044 INFO @ Tue, 16 Jun 2020 11:25:27: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:25:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:25:28: #1 tags after filtering in treatment: 4678423 INFO @ Tue, 16 Jun 2020 11:25:28: #1 Redundant rate of treatment: 0.64 INFO @ Tue, 16 Jun 2020 11:25:28: #1 finished! INFO @ Tue, 16 Jun 2020 11:25:28: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:25:28: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:25:28: #2 number of paired peaks: 3943 INFO @ Tue, 16 Jun 2020 11:25:28: start model_add_line... INFO @ Tue, 16 Jun 2020 11:25:28: start X-correlation... INFO @ Tue, 16 Jun 2020 11:25:28: end of X-cor INFO @ Tue, 16 Jun 2020 11:25:28: #2 finished! INFO @ Tue, 16 Jun 2020 11:25:28: #2 predicted fragment length is 209 bps INFO @ Tue, 16 Jun 2020 11:25:28: #2 alternative fragment length(s) may be 209 bps INFO @ Tue, 16 Jun 2020 11:25:28: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4012478/SRX4012478.10_model.r INFO @ Tue, 16 Jun 2020 11:25:28: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:25:28: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:25:32: 56000000 INFO @ Tue, 16 Jun 2020 11:25:38: 57000000 INFO @ Tue, 16 Jun 2020 11:25:44: 58000000 INFO @ Tue, 16 Jun 2020 11:25:45: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:25:50: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4012478/SRX4012478.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:25:50: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4012478/SRX4012478.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:25:50: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4012478/SRX4012478.10_summits.bed INFO @ Tue, 16 Jun 2020 11:25:50: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (4166 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:25:50: 59000000 INFO @ Tue, 16 Jun 2020 11:25:54: #1 tag size is determined as 75 bps INFO @ Tue, 16 Jun 2020 11:25:54: #1 tag size = 75 INFO @ Tue, 16 Jun 2020 11:25:54: #1 total tags in treatment: 12837044 INFO @ Tue, 16 Jun 2020 11:25:54: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:25:54: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:25:54: #1 tags after filtering in treatment: 4678423 INFO @ Tue, 16 Jun 2020 11:25:54: #1 Redundant rate of treatment: 0.64 INFO @ Tue, 16 Jun 2020 11:25:54: #1 finished! INFO @ Tue, 16 Jun 2020 11:25:54: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:25:54: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:25:55: #2 number of paired peaks: 3943 INFO @ Tue, 16 Jun 2020 11:25:55: start model_add_line... INFO @ Tue, 16 Jun 2020 11:25:55: start X-correlation... INFO @ Tue, 16 Jun 2020 11:25:55: end of X-cor INFO @ Tue, 16 Jun 2020 11:25:55: #2 finished! INFO @ Tue, 16 Jun 2020 11:25:55: #2 predicted fragment length is 209 bps INFO @ Tue, 16 Jun 2020 11:25:55: #2 alternative fragment length(s) may be 209 bps INFO @ Tue, 16 Jun 2020 11:25:55: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4012478/SRX4012478.20_model.r INFO @ Tue, 16 Jun 2020 11:25:55: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:25:55: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:26:11: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:26:16: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4012478/SRX4012478.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:26:16: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4012478/SRX4012478.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:26:16: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4012478/SRX4012478.20_summits.bed INFO @ Tue, 16 Jun 2020 11:26:16: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (2464 records, 4 fields): 3 millis CompletedMACS2peakCalling