Job ID = 12265666 SRX = SRX3141082 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:52:52 86746540 reads; of these: 86746540 (100.00%) were paired; of these: 53479945 (61.65%) aligned concordantly 0 times 26915831 (31.03%) aligned concordantly exactly 1 time 6350764 (7.32%) aligned concordantly >1 times ---- 53479945 pairs aligned concordantly 0 times; of these: 6091224 (11.39%) aligned discordantly 1 time ---- 47388721 pairs aligned 0 times concordantly or discordantly; of these: 94777442 mates make up the pairs; of these: 91016169 (96.03%) aligned 0 times 1439513 (1.52%) aligned exactly 1 time 2321760 (2.45%) aligned >1 times 47.54% overall alignment rate Time searching: 00:52:52 Overall time: 00:52:52 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 11193657 / 38913578 = 0.2877 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:17:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX3141082/SRX3141082.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX3141082/SRX3141082.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX3141082/SRX3141082.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX3141082/SRX3141082.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:17:58: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:17:58: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:18:04: 1000000 INFO @ Sat, 03 Apr 2021 09:18:10: 2000000 INFO @ Sat, 03 Apr 2021 09:18:16: 3000000 INFO @ Sat, 03 Apr 2021 09:18:22: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:18:28: 5000000 INFO @ Sat, 03 Apr 2021 09:18:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX3141082/SRX3141082.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX3141082/SRX3141082.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX3141082/SRX3141082.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX3141082/SRX3141082.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:18:28: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:18:28: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:18:34: 6000000 INFO @ Sat, 03 Apr 2021 09:18:35: 1000000 INFO @ Sat, 03 Apr 2021 09:18:41: 7000000 INFO @ Sat, 03 Apr 2021 09:18:41: 2000000 INFO @ Sat, 03 Apr 2021 09:18:48: 8000000 INFO @ Sat, 03 Apr 2021 09:18:48: 3000000 INFO @ Sat, 03 Apr 2021 09:18:54: 4000000 INFO @ Sat, 03 Apr 2021 09:18:55: 9000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:18:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX3141082/SRX3141082.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX3141082/SRX3141082.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX3141082/SRX3141082.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX3141082/SRX3141082.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:18:58: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:18:58: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:19:01: 5000000 INFO @ Sat, 03 Apr 2021 09:19:02: 10000000 INFO @ Sat, 03 Apr 2021 09:19:06: 1000000 INFO @ Sat, 03 Apr 2021 09:19:08: 6000000 INFO @ Sat, 03 Apr 2021 09:19:09: 11000000 INFO @ Sat, 03 Apr 2021 09:19:14: 2000000 INFO @ Sat, 03 Apr 2021 09:19:15: 7000000 INFO @ Sat, 03 Apr 2021 09:19:16: 12000000 INFO @ Sat, 03 Apr 2021 09:19:22: 3000000 INFO @ Sat, 03 Apr 2021 09:19:22: 8000000 INFO @ Sat, 03 Apr 2021 09:19:23: 13000000 INFO @ Sat, 03 Apr 2021 09:19:30: 4000000 INFO @ Sat, 03 Apr 2021 09:19:30: 9000000 INFO @ Sat, 03 Apr 2021 09:19:30: 14000000 INFO @ Sat, 03 Apr 2021 09:19:37: 10000000 INFO @ Sat, 03 Apr 2021 09:19:37: 15000000 INFO @ Sat, 03 Apr 2021 09:19:37: 5000000 INFO @ Sat, 03 Apr 2021 09:19:44: 11000000 INFO @ Sat, 03 Apr 2021 09:19:44: 16000000 INFO @ Sat, 03 Apr 2021 09:19:45: 6000000 INFO @ Sat, 03 Apr 2021 09:19:51: 12000000 INFO @ Sat, 03 Apr 2021 09:19:51: 17000000 INFO @ Sat, 03 Apr 2021 09:19:53: 7000000 INFO @ Sat, 03 Apr 2021 09:19:58: 13000000 INFO @ Sat, 03 Apr 2021 09:19:59: 18000000 INFO @ Sat, 03 Apr 2021 09:20:01: 8000000 INFO @ Sat, 03 Apr 2021 09:20:05: 14000000 INFO @ Sat, 03 Apr 2021 09:20:06: 19000000 INFO @ Sat, 03 Apr 2021 09:20:08: 9000000 INFO @ Sat, 03 Apr 2021 09:20:12: 15000000 INFO @ Sat, 03 Apr 2021 09:20:13: 20000000 INFO @ Sat, 03 Apr 2021 09:20:16: 10000000 INFO @ Sat, 03 Apr 2021 09:20:19: 16000000 INFO @ Sat, 03 Apr 2021 09:20:20: 21000000 INFO @ Sat, 03 Apr 2021 09:20:23: 11000000 INFO @ Sat, 03 Apr 2021 09:20:27: 17000000 INFO @ Sat, 03 Apr 2021 09:20:27: 22000000 INFO @ Sat, 03 Apr 2021 09:20:31: 12000000 INFO @ Sat, 03 Apr 2021 09:20:34: 23000000 INFO @ Sat, 03 Apr 2021 09:20:34: 18000000 INFO @ Sat, 03 Apr 2021 09:20:39: 13000000 INFO @ Sat, 03 Apr 2021 09:20:41: 24000000 INFO @ Sat, 03 Apr 2021 09:20:41: 19000000 INFO @ Sat, 03 Apr 2021 09:20:47: 14000000 INFO @ Sat, 03 Apr 2021 09:20:48: 25000000 INFO @ Sat, 03 Apr 2021 09:20:49: 20000000 INFO @ Sat, 03 Apr 2021 09:20:54: 15000000 INFO @ Sat, 03 Apr 2021 09:20:55: 26000000 INFO @ Sat, 03 Apr 2021 09:20:56: 21000000 INFO @ Sat, 03 Apr 2021 09:21:02: 27000000 INFO @ Sat, 03 Apr 2021 09:21:02: 16000000 INFO @ Sat, 03 Apr 2021 09:21:03: 22000000 INFO @ Sat, 03 Apr 2021 09:21:09: 28000000 INFO @ Sat, 03 Apr 2021 09:21:10: 17000000 INFO @ Sat, 03 Apr 2021 09:21:10: 23000000 INFO @ Sat, 03 Apr 2021 09:21:16: 29000000 INFO @ Sat, 03 Apr 2021 09:21:17: 24000000 INFO @ Sat, 03 Apr 2021 09:21:17: 18000000 INFO @ Sat, 03 Apr 2021 09:21:24: 30000000 INFO @ Sat, 03 Apr 2021 09:21:24: 25000000 INFO @ Sat, 03 Apr 2021 09:21:25: 19000000 INFO @ Sat, 03 Apr 2021 09:21:31: 31000000 INFO @ Sat, 03 Apr 2021 09:21:31: 26000000 INFO @ Sat, 03 Apr 2021 09:21:33: 20000000 INFO @ Sat, 03 Apr 2021 09:21:38: 32000000 INFO @ Sat, 03 Apr 2021 09:21:39: 27000000 INFO @ Sat, 03 Apr 2021 09:21:40: 21000000 INFO @ Sat, 03 Apr 2021 09:21:45: 33000000 INFO @ Sat, 03 Apr 2021 09:21:46: 28000000 INFO @ Sat, 03 Apr 2021 09:21:48: 22000000 INFO @ Sat, 03 Apr 2021 09:21:52: 34000000 INFO @ Sat, 03 Apr 2021 09:21:53: 29000000 INFO @ Sat, 03 Apr 2021 09:21:56: 23000000 INFO @ Sat, 03 Apr 2021 09:22:00: 35000000 INFO @ Sat, 03 Apr 2021 09:22:00: 30000000 INFO @ Sat, 03 Apr 2021 09:22:03: 24000000 INFO @ Sat, 03 Apr 2021 09:22:07: 36000000 INFO @ Sat, 03 Apr 2021 09:22:07: 31000000 INFO @ Sat, 03 Apr 2021 09:22:11: 25000000 INFO @ Sat, 03 Apr 2021 09:22:14: 37000000 INFO @ Sat, 03 Apr 2021 09:22:14: 32000000 INFO @ Sat, 03 Apr 2021 09:22:19: 26000000 INFO @ Sat, 03 Apr 2021 09:22:21: 38000000 INFO @ Sat, 03 Apr 2021 09:22:22: 33000000 INFO @ Sat, 03 Apr 2021 09:22:26: 27000000 INFO @ Sat, 03 Apr 2021 09:22:28: 39000000 INFO @ Sat, 03 Apr 2021 09:22:29: 34000000 INFO @ Sat, 03 Apr 2021 09:22:34: 28000000 INFO @ Sat, 03 Apr 2021 09:22:36: 40000000 INFO @ Sat, 03 Apr 2021 09:22:36: 35000000 INFO @ Sat, 03 Apr 2021 09:22:42: 29000000 INFO @ Sat, 03 Apr 2021 09:22:43: 41000000 INFO @ Sat, 03 Apr 2021 09:22:44: 36000000 INFO @ Sat, 03 Apr 2021 09:22:50: 42000000 INFO @ Sat, 03 Apr 2021 09:22:50: 30000000 INFO @ Sat, 03 Apr 2021 09:22:51: 37000000 INFO @ Sat, 03 Apr 2021 09:22:56: 43000000 INFO @ Sat, 03 Apr 2021 09:22:58: 38000000 INFO @ Sat, 03 Apr 2021 09:22:58: 31000000 INFO @ Sat, 03 Apr 2021 09:23:03: 44000000 INFO @ Sat, 03 Apr 2021 09:23:05: 39000000 INFO @ Sat, 03 Apr 2021 09:23:06: 32000000 INFO @ Sat, 03 Apr 2021 09:23:10: 45000000 INFO @ Sat, 03 Apr 2021 09:23:12: 40000000 INFO @ Sat, 03 Apr 2021 09:23:13: 33000000 INFO @ Sat, 03 Apr 2021 09:23:17: 46000000 INFO @ Sat, 03 Apr 2021 09:23:19: 41000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 09:23:21: 34000000 INFO @ Sat, 03 Apr 2021 09:23:24: 47000000 INFO @ Sat, 03 Apr 2021 09:23:26: 42000000 INFO @ Sat, 03 Apr 2021 09:23:29: 35000000 INFO @ Sat, 03 Apr 2021 09:23:31: 48000000 INFO @ Sat, 03 Apr 2021 09:23:33: 43000000 INFO @ Sat, 03 Apr 2021 09:23:36: 36000000 INFO @ Sat, 03 Apr 2021 09:23:38: 49000000 INFO @ Sat, 03 Apr 2021 09:23:40: 44000000 INFO @ Sat, 03 Apr 2021 09:23:44: 37000000 INFO @ Sat, 03 Apr 2021 09:23:45: 50000000 INFO @ Sat, 03 Apr 2021 09:23:46: 45000000 INFO @ Sat, 03 Apr 2021 09:23:52: 51000000 INFO @ Sat, 03 Apr 2021 09:23:52: 38000000 INFO @ Sat, 03 Apr 2021 09:23:53: 46000000 INFO @ Sat, 03 Apr 2021 09:23:59: 52000000 INFO @ Sat, 03 Apr 2021 09:24:00: 39000000 INFO @ Sat, 03 Apr 2021 09:24:00: 47000000 INFO @ Sat, 03 Apr 2021 09:24:06: 53000000 INFO @ Sat, 03 Apr 2021 09:24:07: 48000000 INFO @ Sat, 03 Apr 2021 09:24:07: 40000000 INFO @ Sat, 03 Apr 2021 09:24:13: 54000000 INFO @ Sat, 03 Apr 2021 09:24:14: 49000000 INFO @ Sat, 03 Apr 2021 09:24:15: 41000000 INFO @ Sat, 03 Apr 2021 09:24:20: 55000000 INFO @ Sat, 03 Apr 2021 09:24:21: 50000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 09:24:23: 42000000 INFO @ Sat, 03 Apr 2021 09:24:27: 56000000 INFO @ Sat, 03 Apr 2021 09:24:29: 51000000 INFO @ Sat, 03 Apr 2021 09:24:30: 43000000 INFO @ Sat, 03 Apr 2021 09:24:34: 57000000 INFO @ Sat, 03 Apr 2021 09:24:36: 52000000 INFO @ Sat, 03 Apr 2021 09:24:38: 44000000 INFO @ Sat, 03 Apr 2021 09:24:41: 58000000 INFO @ Sat, 03 Apr 2021 09:24:43: 53000000 INFO @ Sat, 03 Apr 2021 09:24:45: 45000000 INFO @ Sat, 03 Apr 2021 09:24:48: 59000000 INFO @ Sat, 03 Apr 2021 09:24:50: 54000000 INFO @ Sat, 03 Apr 2021 09:24:53: 46000000 INFO @ Sat, 03 Apr 2021 09:24:55: 60000000 INFO @ Sat, 03 Apr 2021 09:24:56: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 09:24:56: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 09:24:56: #1 total tags in treatment: 23920865 INFO @ Sat, 03 Apr 2021 09:24:56: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:24:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:24:57: #1 tags after filtering in treatment: 15369959 INFO @ Sat, 03 Apr 2021 09:24:57: #1 Redundant rate of treatment: 0.36 INFO @ Sat, 03 Apr 2021 09:24:57: #1 finished! INFO @ Sat, 03 Apr 2021 09:24:57: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:24:57: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:24:57: 55000000 INFO @ Sat, 03 Apr 2021 09:24:58: #2 number of paired peaks: 294 WARNING @ Sat, 03 Apr 2021 09:24:58: Fewer paired peaks (294) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 294 pairs to build model! INFO @ Sat, 03 Apr 2021 09:24:58: start model_add_line... INFO @ Sat, 03 Apr 2021 09:24:58: start X-correlation... INFO @ Sat, 03 Apr 2021 09:24:58: end of X-cor INFO @ Sat, 03 Apr 2021 09:24:58: #2 finished! INFO @ Sat, 03 Apr 2021 09:24:58: #2 predicted fragment length is 94 bps INFO @ Sat, 03 Apr 2021 09:24:58: #2 alternative fragment length(s) may be 4,94 bps INFO @ Sat, 03 Apr 2021 09:24:58: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX3141082/SRX3141082.05_model.r WARNING @ Sat, 03 Apr 2021 09:24:58: #2 Since the d (94) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:24:58: #2 You may need to consider one of the other alternative d(s): 4,94 WARNING @ Sat, 03 Apr 2021 09:24:58: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:24:58: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:24:58: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:25:01: 47000000 INFO @ Sat, 03 Apr 2021 09:25:04: 56000000 INFO @ Sat, 03 Apr 2021 09:25:08: 48000000 INFO @ Sat, 03 Apr 2021 09:25:11: 57000000 INFO @ Sat, 03 Apr 2021 09:25:16: 49000000 INFO @ Sat, 03 Apr 2021 09:25:18: 58000000 INFO @ Sat, 03 Apr 2021 09:25:24: 50000000 INFO @ Sat, 03 Apr 2021 09:25:25: 59000000 INFO @ Sat, 03 Apr 2021 09:25:30: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:25:32: 60000000 INFO @ Sat, 03 Apr 2021 09:25:32: 51000000 INFO @ Sat, 03 Apr 2021 09:25:33: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 09:25:33: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 09:25:33: #1 total tags in treatment: 23920865 INFO @ Sat, 03 Apr 2021 09:25:33: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:25:33: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:25:33: #1 tags after filtering in treatment: 15369959 INFO @ Sat, 03 Apr 2021 09:25:33: #1 Redundant rate of treatment: 0.36 INFO @ Sat, 03 Apr 2021 09:25:33: #1 finished! INFO @ Sat, 03 Apr 2021 09:25:33: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:25:33: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:25:34: #2 number of paired peaks: 294 WARNING @ Sat, 03 Apr 2021 09:25:34: Fewer paired peaks (294) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 294 pairs to build model! INFO @ Sat, 03 Apr 2021 09:25:34: start model_add_line... INFO @ Sat, 03 Apr 2021 09:25:34: start X-correlation... INFO @ Sat, 03 Apr 2021 09:25:34: end of X-cor INFO @ Sat, 03 Apr 2021 09:25:34: #2 finished! INFO @ Sat, 03 Apr 2021 09:25:34: #2 predicted fragment length is 94 bps INFO @ Sat, 03 Apr 2021 09:25:34: #2 alternative fragment length(s) may be 4,94 bps INFO @ Sat, 03 Apr 2021 09:25:34: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX3141082/SRX3141082.10_model.r WARNING @ Sat, 03 Apr 2021 09:25:34: #2 Since the d (94) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:25:34: #2 You may need to consider one of the other alternative d(s): 4,94 WARNING @ Sat, 03 Apr 2021 09:25:34: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:25:34: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:25:34: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:25:39: 52000000 INFO @ Sat, 03 Apr 2021 09:25:46: 53000000 INFO @ Sat, 03 Apr 2021 09:25:48: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX3141082/SRX3141082.05_peaks.xls INFO @ Sat, 03 Apr 2021 09:25:48: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX3141082/SRX3141082.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:25:48: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX3141082/SRX3141082.05_summits.bed INFO @ Sat, 03 Apr 2021 09:25:48: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (10398 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 09:25:54: 54000000 INFO @ Sat, 03 Apr 2021 09:26:01: 55000000 INFO @ Sat, 03 Apr 2021 09:26:08: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:26:08: 56000000 INFO @ Sat, 03 Apr 2021 09:26:16: 57000000 INFO @ Sat, 03 Apr 2021 09:26:23: 58000000 INFO @ Sat, 03 Apr 2021 09:26:26: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX3141082/SRX3141082.10_peaks.xls INFO @ Sat, 03 Apr 2021 09:26:26: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX3141082/SRX3141082.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:26:26: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX3141082/SRX3141082.10_summits.bed INFO @ Sat, 03 Apr 2021 09:26:26: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (5535 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 09:26:31: 59000000 INFO @ Sat, 03 Apr 2021 09:26:38: 60000000 INFO @ Sat, 03 Apr 2021 09:26:39: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 09:26:39: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 09:26:39: #1 total tags in treatment: 23920865 INFO @ Sat, 03 Apr 2021 09:26:39: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:26:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:26:39: #1 tags after filtering in treatment: 15369959 INFO @ Sat, 03 Apr 2021 09:26:39: #1 Redundant rate of treatment: 0.36 INFO @ Sat, 03 Apr 2021 09:26:39: #1 finished! INFO @ Sat, 03 Apr 2021 09:26:39: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:26:39: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:26:40: #2 number of paired peaks: 294 WARNING @ Sat, 03 Apr 2021 09:26:40: Fewer paired peaks (294) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 294 pairs to build model! INFO @ Sat, 03 Apr 2021 09:26:40: start model_add_line... INFO @ Sat, 03 Apr 2021 09:26:40: start X-correlation... INFO @ Sat, 03 Apr 2021 09:26:40: end of X-cor INFO @ Sat, 03 Apr 2021 09:26:40: #2 finished! INFO @ Sat, 03 Apr 2021 09:26:40: #2 predicted fragment length is 94 bps INFO @ Sat, 03 Apr 2021 09:26:40: #2 alternative fragment length(s) may be 4,94 bps INFO @ Sat, 03 Apr 2021 09:26:40: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX3141082/SRX3141082.20_model.r WARNING @ Sat, 03 Apr 2021 09:26:40: #2 Since the d (94) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:26:40: #2 You may need to consider one of the other alternative d(s): 4,94 WARNING @ Sat, 03 Apr 2021 09:26:40: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:26:40: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:26:40: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:27:14: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:27:32: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX3141082/SRX3141082.20_peaks.xls INFO @ Sat, 03 Apr 2021 09:27:32: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX3141082/SRX3141082.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:27:32: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX3141082/SRX3141082.20_summits.bed INFO @ Sat, 03 Apr 2021 09:27:32: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (2163 records, 4 fields): 4 millis CompletedMACS2peakCalling