Job ID = 6367239 SRX = SRX3058059 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-15T23:14:31 prefetch.2.10.7: 1) Downloading 'SRR5892350'... 2020-06-15T23:14:31 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:22:21 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:22:21 prefetch.2.10.7: 1) 'SRR5892350' was downloaded successfully 2020-06-15T23:22:21 prefetch.2.10.7: 'SRR5892350' has 0 unresolved dependencies Read 23526471 spots for SRR5892350/SRR5892350.sra Written 23526471 spots for SRR5892350/SRR5892350.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:48:43 23526471 reads; of these: 23526471 (100.00%) were paired; of these: 1381563 (5.87%) aligned concordantly 0 times 19510126 (82.93%) aligned concordantly exactly 1 time 2634782 (11.20%) aligned concordantly >1 times ---- 1381563 pairs aligned concordantly 0 times; of these: 209934 (15.20%) aligned discordantly 1 time ---- 1171629 pairs aligned 0 times concordantly or discordantly; of these: 2343258 mates make up the pairs; of these: 2027117 (86.51%) aligned 0 times 213077 (9.09%) aligned exactly 1 time 103064 (4.40%) aligned >1 times 95.69% overall alignment rate Time searching: 00:48:43 Overall time: 00:48:43 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 2954411 / 22337408 = 0.1323 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 09:33:43: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX3058059/SRX3058059.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX3058059/SRX3058059.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX3058059/SRX3058059.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX3058059/SRX3058059.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 09:33:43: #1 read tag files... INFO @ Tue, 16 Jun 2020 09:33:43: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 09:33:51: 1000000 INFO @ Tue, 16 Jun 2020 09:33:58: 2000000 INFO @ Tue, 16 Jun 2020 09:34:06: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 09:34:13: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX3058059/SRX3058059.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX3058059/SRX3058059.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX3058059/SRX3058059.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX3058059/SRX3058059.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 09:34:13: #1 read tag files... INFO @ Tue, 16 Jun 2020 09:34:13: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 09:34:14: 4000000 INFO @ Tue, 16 Jun 2020 09:34:21: 1000000 INFO @ Tue, 16 Jun 2020 09:34:23: 5000000 INFO @ Tue, 16 Jun 2020 09:34:30: 2000000 INFO @ Tue, 16 Jun 2020 09:34:31: 6000000 INFO @ Tue, 16 Jun 2020 09:34:38: 3000000 INFO @ Tue, 16 Jun 2020 09:34:40: 7000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 09:34:43: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX3058059/SRX3058059.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX3058059/SRX3058059.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX3058059/SRX3058059.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX3058059/SRX3058059.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 09:34:43: #1 read tag files... INFO @ Tue, 16 Jun 2020 09:34:43: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 09:34:48: 4000000 INFO @ Tue, 16 Jun 2020 09:34:50: 8000000 INFO @ Tue, 16 Jun 2020 09:34:55: 1000000 INFO @ Tue, 16 Jun 2020 09:34:59: 5000000 INFO @ Tue, 16 Jun 2020 09:35:01: 9000000 INFO @ Tue, 16 Jun 2020 09:35:08: 2000000 INFO @ Tue, 16 Jun 2020 09:35:10: 6000000 INFO @ Tue, 16 Jun 2020 09:35:12: 10000000 INFO @ Tue, 16 Jun 2020 09:35:20: 3000000 INFO @ Tue, 16 Jun 2020 09:35:21: 7000000 INFO @ Tue, 16 Jun 2020 09:35:23: 11000000 INFO @ Tue, 16 Jun 2020 09:35:31: 8000000 INFO @ Tue, 16 Jun 2020 09:35:32: 4000000 INFO @ Tue, 16 Jun 2020 09:35:33: 12000000 INFO @ Tue, 16 Jun 2020 09:35:42: 9000000 INFO @ Tue, 16 Jun 2020 09:35:45: 5000000 INFO @ Tue, 16 Jun 2020 09:35:46: 13000000 INFO @ Tue, 16 Jun 2020 09:35:53: 10000000 INFO @ Tue, 16 Jun 2020 09:35:57: 14000000 INFO @ Tue, 16 Jun 2020 09:35:57: 6000000 INFO @ Tue, 16 Jun 2020 09:36:04: 11000000 INFO @ Tue, 16 Jun 2020 09:36:08: 15000000 INFO @ Tue, 16 Jun 2020 09:36:10: 7000000 INFO @ Tue, 16 Jun 2020 09:36:15: 12000000 INFO @ Tue, 16 Jun 2020 09:36:19: 16000000 INFO @ Tue, 16 Jun 2020 09:36:21: 8000000 INFO @ Tue, 16 Jun 2020 09:36:28: 13000000 INFO @ Tue, 16 Jun 2020 09:36:31: 17000000 INFO @ Tue, 16 Jun 2020 09:36:32: 9000000 INFO @ Tue, 16 Jun 2020 09:36:40: 14000000 INFO @ Tue, 16 Jun 2020 09:36:42: 18000000 INFO @ Tue, 16 Jun 2020 09:36:44: 10000000 INFO @ Tue, 16 Jun 2020 09:36:52: 15000000 INFO @ Tue, 16 Jun 2020 09:36:54: 19000000 INFO @ Tue, 16 Jun 2020 09:36:56: 11000000 INFO @ Tue, 16 Jun 2020 09:37:03: 16000000 INFO @ Tue, 16 Jun 2020 09:37:06: 20000000 INFO @ Tue, 16 Jun 2020 09:37:07: 12000000 INFO @ Tue, 16 Jun 2020 09:37:15: 17000000 INFO @ Tue, 16 Jun 2020 09:37:17: 21000000 INFO @ Tue, 16 Jun 2020 09:37:18: 13000000 INFO @ Tue, 16 Jun 2020 09:37:26: 18000000 INFO @ Tue, 16 Jun 2020 09:37:28: 22000000 INFO @ Tue, 16 Jun 2020 09:37:30: 14000000 INFO @ Tue, 16 Jun 2020 09:37:37: 19000000 INFO @ Tue, 16 Jun 2020 09:37:40: 23000000 INFO @ Tue, 16 Jun 2020 09:37:42: 15000000 INFO @ Tue, 16 Jun 2020 09:37:48: 20000000 INFO @ Tue, 16 Jun 2020 09:37:51: 24000000 INFO @ Tue, 16 Jun 2020 09:37:55: 16000000 INFO @ Tue, 16 Jun 2020 09:37:59: 21000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 09:38:02: 25000000 INFO @ Tue, 16 Jun 2020 09:38:07: 17000000 INFO @ Tue, 16 Jun 2020 09:38:09: 22000000 INFO @ Tue, 16 Jun 2020 09:38:13: 26000000 INFO @ Tue, 16 Jun 2020 09:38:20: 18000000 INFO @ Tue, 16 Jun 2020 09:38:20: 23000000 INFO @ Tue, 16 Jun 2020 09:38:23: 27000000 INFO @ Tue, 16 Jun 2020 09:38:31: 24000000 INFO @ Tue, 16 Jun 2020 09:38:32: 19000000 INFO @ Tue, 16 Jun 2020 09:38:34: 28000000 INFO @ Tue, 16 Jun 2020 09:38:42: 25000000 INFO @ Tue, 16 Jun 2020 09:38:45: 20000000 INFO @ Tue, 16 Jun 2020 09:38:45: 29000000 INFO @ Tue, 16 Jun 2020 09:38:53: 26000000 INFO @ Tue, 16 Jun 2020 09:38:56: 30000000 INFO @ Tue, 16 Jun 2020 09:38:57: 21000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 09:39:04: 27000000 INFO @ Tue, 16 Jun 2020 09:39:07: 31000000 INFO @ Tue, 16 Jun 2020 09:39:10: 22000000 INFO @ Tue, 16 Jun 2020 09:39:15: 28000000 INFO @ Tue, 16 Jun 2020 09:39:18: 32000000 INFO @ Tue, 16 Jun 2020 09:39:22: 23000000 INFO @ Tue, 16 Jun 2020 09:39:25: 29000000 INFO @ Tue, 16 Jun 2020 09:39:29: 33000000 INFO @ Tue, 16 Jun 2020 09:39:35: 24000000 INFO @ Tue, 16 Jun 2020 09:39:36: 30000000 INFO @ Tue, 16 Jun 2020 09:39:40: 34000000 INFO @ Tue, 16 Jun 2020 09:39:47: 31000000 INFO @ Tue, 16 Jun 2020 09:39:47: 25000000 INFO @ Tue, 16 Jun 2020 09:39:51: 35000000 INFO @ Tue, 16 Jun 2020 09:39:58: 32000000 INFO @ Tue, 16 Jun 2020 09:40:00: 26000000 INFO @ Tue, 16 Jun 2020 09:40:02: 36000000 INFO @ Tue, 16 Jun 2020 09:40:09: 33000000 INFO @ Tue, 16 Jun 2020 09:40:13: 27000000 INFO @ Tue, 16 Jun 2020 09:40:13: 37000000 INFO @ Tue, 16 Jun 2020 09:40:20: 34000000 INFO @ Tue, 16 Jun 2020 09:40:24: 38000000 INFO @ Tue, 16 Jun 2020 09:40:25: 28000000 INFO @ Tue, 16 Jun 2020 09:40:31: 35000000 INFO @ Tue, 16 Jun 2020 09:40:35: 39000000 INFO @ Tue, 16 Jun 2020 09:40:36: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 09:40:36: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 09:40:36: #1 total tags in treatment: 19207800 INFO @ Tue, 16 Jun 2020 09:40:36: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 09:40:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 09:40:36: #1 tags after filtering in treatment: 17365816 INFO @ Tue, 16 Jun 2020 09:40:36: #1 Redundant rate of treatment: 0.10 INFO @ Tue, 16 Jun 2020 09:40:36: #1 finished! INFO @ Tue, 16 Jun 2020 09:40:36: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 09:40:36: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 09:40:37: 29000000 INFO @ Tue, 16 Jun 2020 09:40:38: #2 number of paired peaks: 236 WARNING @ Tue, 16 Jun 2020 09:40:38: Fewer paired peaks (236) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 236 pairs to build model! INFO @ Tue, 16 Jun 2020 09:40:38: start model_add_line... INFO @ Tue, 16 Jun 2020 09:40:38: start X-correlation... INFO @ Tue, 16 Jun 2020 09:40:38: end of X-cor INFO @ Tue, 16 Jun 2020 09:40:38: #2 finished! INFO @ Tue, 16 Jun 2020 09:40:38: #2 predicted fragment length is 216 bps INFO @ Tue, 16 Jun 2020 09:40:38: #2 alternative fragment length(s) may be 4,216 bps INFO @ Tue, 16 Jun 2020 09:40:38: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX3058059/SRX3058059.05_model.r WARNING @ Tue, 16 Jun 2020 09:40:38: #2 Since the d (216) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 09:40:38: #2 You may need to consider one of the other alternative d(s): 4,216 WARNING @ Tue, 16 Jun 2020 09:40:38: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 09:40:38: #3 Call peaks... INFO @ Tue, 16 Jun 2020 09:40:38: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 09:40:42: 36000000 INFO @ Tue, 16 Jun 2020 09:40:50: 30000000 INFO @ Tue, 16 Jun 2020 09:40:53: 37000000 INFO @ Tue, 16 Jun 2020 09:41:03: 31000000 INFO @ Tue, 16 Jun 2020 09:41:03: 38000000 INFO @ Tue, 16 Jun 2020 09:41:09: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 09:41:14: 39000000 INFO @ Tue, 16 Jun 2020 09:41:15: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 09:41:15: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 09:41:15: #1 total tags in treatment: 19207800 INFO @ Tue, 16 Jun 2020 09:41:15: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 09:41:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 09:41:15: 32000000 INFO @ Tue, 16 Jun 2020 09:41:15: #1 tags after filtering in treatment: 17365816 INFO @ Tue, 16 Jun 2020 09:41:15: #1 Redundant rate of treatment: 0.10 INFO @ Tue, 16 Jun 2020 09:41:15: #1 finished! INFO @ Tue, 16 Jun 2020 09:41:15: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 09:41:15: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 09:41:17: #2 number of paired peaks: 236 WARNING @ Tue, 16 Jun 2020 09:41:17: Fewer paired peaks (236) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 236 pairs to build model! INFO @ Tue, 16 Jun 2020 09:41:17: start model_add_line... INFO @ Tue, 16 Jun 2020 09:41:17: start X-correlation... INFO @ Tue, 16 Jun 2020 09:41:17: end of X-cor INFO @ Tue, 16 Jun 2020 09:41:17: #2 finished! INFO @ Tue, 16 Jun 2020 09:41:17: #2 predicted fragment length is 216 bps INFO @ Tue, 16 Jun 2020 09:41:17: #2 alternative fragment length(s) may be 4,216 bps INFO @ Tue, 16 Jun 2020 09:41:17: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX3058059/SRX3058059.10_model.r WARNING @ Tue, 16 Jun 2020 09:41:17: #2 Since the d (216) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 09:41:17: #2 You may need to consider one of the other alternative d(s): 4,216 WARNING @ Tue, 16 Jun 2020 09:41:17: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 09:41:17: #3 Call peaks... INFO @ Tue, 16 Jun 2020 09:41:17: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 09:41:24: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX3058059/SRX3058059.05_peaks.xls INFO @ Tue, 16 Jun 2020 09:41:24: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX3058059/SRX3058059.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 09:41:24: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX3058059/SRX3058059.05_summits.bed INFO @ Tue, 16 Jun 2020 09:41:24: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (440 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 09:41:26: 33000000 INFO @ Tue, 16 Jun 2020 09:41:38: 34000000 INFO @ Tue, 16 Jun 2020 09:41:48: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 09:41:48: 35000000 INFO @ Tue, 16 Jun 2020 09:41:59: 36000000 INFO @ Tue, 16 Jun 2020 09:42:03: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX3058059/SRX3058059.10_peaks.xls INFO @ Tue, 16 Jun 2020 09:42:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX3058059/SRX3058059.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 09:42:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX3058059/SRX3058059.10_summits.bed INFO @ Tue, 16 Jun 2020 09:42:03: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (365 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 09:42:10: 37000000 INFO @ Tue, 16 Jun 2020 09:42:21: 38000000 INFO @ Tue, 16 Jun 2020 09:42:32: 39000000 INFO @ Tue, 16 Jun 2020 09:42:33: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 09:42:33: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 09:42:33: #1 total tags in treatment: 19207800 INFO @ Tue, 16 Jun 2020 09:42:33: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 09:42:33: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 09:42:33: #1 tags after filtering in treatment: 17365816 INFO @ Tue, 16 Jun 2020 09:42:33: #1 Redundant rate of treatment: 0.10 INFO @ Tue, 16 Jun 2020 09:42:33: #1 finished! INFO @ Tue, 16 Jun 2020 09:42:33: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 09:42:33: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 09:42:35: #2 number of paired peaks: 236 WARNING @ Tue, 16 Jun 2020 09:42:35: Fewer paired peaks (236) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 236 pairs to build model! INFO @ Tue, 16 Jun 2020 09:42:35: start model_add_line... INFO @ Tue, 16 Jun 2020 09:42:35: start X-correlation... INFO @ Tue, 16 Jun 2020 09:42:35: end of X-cor INFO @ Tue, 16 Jun 2020 09:42:35: #2 finished! INFO @ Tue, 16 Jun 2020 09:42:35: #2 predicted fragment length is 216 bps INFO @ Tue, 16 Jun 2020 09:42:35: #2 alternative fragment length(s) may be 4,216 bps INFO @ Tue, 16 Jun 2020 09:42:35: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX3058059/SRX3058059.20_model.r WARNING @ Tue, 16 Jun 2020 09:42:35: #2 Since the d (216) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 09:42:35: #2 You may need to consider one of the other alternative d(s): 4,216 WARNING @ Tue, 16 Jun 2020 09:42:35: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 09:42:35: #3 Call peaks... INFO @ Tue, 16 Jun 2020 09:42:35: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 09:43:06: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 09:43:20: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX3058059/SRX3058059.20_peaks.xls INFO @ Tue, 16 Jun 2020 09:43:20: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX3058059/SRX3058059.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 09:43:20: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX3058059/SRX3058059.20_summits.bed INFO @ Tue, 16 Jun 2020 09:43:20: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (252 records, 4 fields): 1 millis CompletedMACS2peakCalling