Job ID = 12265629 SRX = SRX3029128 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:46:01 67029433 reads; of these: 67029433 (100.00%) were paired; of these: 37300920 (55.65%) aligned concordantly 0 times 25649194 (38.27%) aligned concordantly exactly 1 time 4079319 (6.09%) aligned concordantly >1 times ---- 37300920 pairs aligned concordantly 0 times; of these: 6003725 (16.10%) aligned discordantly 1 time ---- 31297195 pairs aligned 0 times concordantly or discordantly; of these: 62594390 mates make up the pairs; of these: 59610493 (95.23%) aligned 0 times 1256103 (2.01%) aligned exactly 1 time 1727794 (2.76%) aligned >1 times 55.53% overall alignment rate Time searching: 00:46:02 Overall time: 00:46:02 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 15956593 / 35269651 = 0.4524 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:00:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX3029128/SRX3029128.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX3029128/SRX3029128.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX3029128/SRX3029128.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX3029128/SRX3029128.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:00:23: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:00:23: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:00:29: 1000000 INFO @ Sat, 03 Apr 2021 09:00:36: 2000000 INFO @ Sat, 03 Apr 2021 09:00:43: 3000000 INFO @ Sat, 03 Apr 2021 09:00:49: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:00:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX3029128/SRX3029128.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX3029128/SRX3029128.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX3029128/SRX3029128.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX3029128/SRX3029128.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:00:53: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:00:53: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:00:55: 5000000 INFO @ Sat, 03 Apr 2021 09:00:59: 1000000 INFO @ Sat, 03 Apr 2021 09:01:02: 6000000 INFO @ Sat, 03 Apr 2021 09:01:05: 2000000 INFO @ Sat, 03 Apr 2021 09:01:09: 7000000 INFO @ Sat, 03 Apr 2021 09:01:11: 3000000 INFO @ Sat, 03 Apr 2021 09:01:16: 8000000 INFO @ Sat, 03 Apr 2021 09:01:17: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:01:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX3029128/SRX3029128.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX3029128/SRX3029128.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX3029128/SRX3029128.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX3029128/SRX3029128.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:01:23: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:01:23: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:01:23: 9000000 INFO @ Sat, 03 Apr 2021 09:01:24: 5000000 INFO @ Sat, 03 Apr 2021 09:01:29: 1000000 INFO @ Sat, 03 Apr 2021 09:01:30: 6000000 INFO @ Sat, 03 Apr 2021 09:01:30: 10000000 INFO @ Sat, 03 Apr 2021 09:01:35: 2000000 INFO @ Sat, 03 Apr 2021 09:01:36: 7000000 INFO @ Sat, 03 Apr 2021 09:01:37: 11000000 INFO @ Sat, 03 Apr 2021 09:01:42: 3000000 INFO @ Sat, 03 Apr 2021 09:01:42: 8000000 INFO @ Sat, 03 Apr 2021 09:01:44: 12000000 INFO @ Sat, 03 Apr 2021 09:01:48: 4000000 INFO @ Sat, 03 Apr 2021 09:01:49: 9000000 INFO @ Sat, 03 Apr 2021 09:01:50: 13000000 INFO @ Sat, 03 Apr 2021 09:01:54: 5000000 INFO @ Sat, 03 Apr 2021 09:01:55: 10000000 INFO @ Sat, 03 Apr 2021 09:01:57: 14000000 INFO @ Sat, 03 Apr 2021 09:02:01: 6000000 INFO @ Sat, 03 Apr 2021 09:02:01: 11000000 INFO @ Sat, 03 Apr 2021 09:02:04: 15000000 INFO @ Sat, 03 Apr 2021 09:02:07: 7000000 INFO @ Sat, 03 Apr 2021 09:02:07: 12000000 INFO @ Sat, 03 Apr 2021 09:02:10: 16000000 INFO @ Sat, 03 Apr 2021 09:02:13: 8000000 INFO @ Sat, 03 Apr 2021 09:02:14: 13000000 INFO @ Sat, 03 Apr 2021 09:02:17: 17000000 INFO @ Sat, 03 Apr 2021 09:02:19: 9000000 INFO @ Sat, 03 Apr 2021 09:02:20: 14000000 INFO @ Sat, 03 Apr 2021 09:02:24: 18000000 INFO @ Sat, 03 Apr 2021 09:02:26: 10000000 INFO @ Sat, 03 Apr 2021 09:02:26: 15000000 INFO @ Sat, 03 Apr 2021 09:02:30: 19000000 INFO @ Sat, 03 Apr 2021 09:02:32: 11000000 INFO @ Sat, 03 Apr 2021 09:02:32: 16000000 INFO @ Sat, 03 Apr 2021 09:02:37: 20000000 INFO @ Sat, 03 Apr 2021 09:02:38: 12000000 INFO @ Sat, 03 Apr 2021 09:02:38: 17000000 INFO @ Sat, 03 Apr 2021 09:02:44: 21000000 INFO @ Sat, 03 Apr 2021 09:02:44: 13000000 INFO @ Sat, 03 Apr 2021 09:02:45: 18000000 INFO @ Sat, 03 Apr 2021 09:02:50: 14000000 INFO @ Sat, 03 Apr 2021 09:02:50: 22000000 INFO @ Sat, 03 Apr 2021 09:02:51: 19000000 INFO @ Sat, 03 Apr 2021 09:02:56: 15000000 INFO @ Sat, 03 Apr 2021 09:02:57: 23000000 INFO @ Sat, 03 Apr 2021 09:02:57: 20000000 INFO @ Sat, 03 Apr 2021 09:03:02: 16000000 INFO @ Sat, 03 Apr 2021 09:03:04: 21000000 INFO @ Sat, 03 Apr 2021 09:03:04: 24000000 INFO @ Sat, 03 Apr 2021 09:03:08: 17000000 INFO @ Sat, 03 Apr 2021 09:03:10: 22000000 INFO @ Sat, 03 Apr 2021 09:03:11: 25000000 INFO @ Sat, 03 Apr 2021 09:03:15: 18000000 INFO @ Sat, 03 Apr 2021 09:03:17: 23000000 INFO @ Sat, 03 Apr 2021 09:03:18: 26000000 INFO @ Sat, 03 Apr 2021 09:03:21: 19000000 INFO @ Sat, 03 Apr 2021 09:03:23: 24000000 INFO @ Sat, 03 Apr 2021 09:03:25: 27000000 INFO @ Sat, 03 Apr 2021 09:03:27: 20000000 INFO @ Sat, 03 Apr 2021 09:03:29: 25000000 INFO @ Sat, 03 Apr 2021 09:03:32: 28000000 INFO @ Sat, 03 Apr 2021 09:03:33: 21000000 INFO @ Sat, 03 Apr 2021 09:03:36: 26000000 INFO @ Sat, 03 Apr 2021 09:03:39: 29000000 INFO @ Sat, 03 Apr 2021 09:03:40: 22000000 INFO @ Sat, 03 Apr 2021 09:03:42: 27000000 INFO @ Sat, 03 Apr 2021 09:03:46: 30000000 INFO @ Sat, 03 Apr 2021 09:03:46: 23000000 INFO @ Sat, 03 Apr 2021 09:03:48: 28000000 INFO @ Sat, 03 Apr 2021 09:03:52: 24000000 INFO @ Sat, 03 Apr 2021 09:03:53: 31000000 INFO @ Sat, 03 Apr 2021 09:03:55: 29000000 INFO @ Sat, 03 Apr 2021 09:03:58: 25000000 INFO @ Sat, 03 Apr 2021 09:04:00: 32000000 INFO @ Sat, 03 Apr 2021 09:04:01: 30000000 INFO @ Sat, 03 Apr 2021 09:04:05: 26000000 INFO @ Sat, 03 Apr 2021 09:04:07: 33000000 INFO @ Sat, 03 Apr 2021 09:04:08: 31000000 INFO @ Sat, 03 Apr 2021 09:04:11: 27000000 INFO @ Sat, 03 Apr 2021 09:04:14: 34000000 INFO @ Sat, 03 Apr 2021 09:04:14: 32000000 INFO @ Sat, 03 Apr 2021 09:04:18: 28000000 INFO @ Sat, 03 Apr 2021 09:04:21: 33000000 INFO @ Sat, 03 Apr 2021 09:04:21: 35000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 09:04:24: 29000000 INFO @ Sat, 03 Apr 2021 09:04:27: 34000000 INFO @ Sat, 03 Apr 2021 09:04:28: 36000000 INFO @ Sat, 03 Apr 2021 09:04:30: 30000000 INFO @ Sat, 03 Apr 2021 09:04:33: 35000000 INFO @ Sat, 03 Apr 2021 09:04:35: 37000000 INFO @ Sat, 03 Apr 2021 09:04:37: 31000000 INFO @ Sat, 03 Apr 2021 09:04:40: 36000000 INFO @ Sat, 03 Apr 2021 09:04:42: 38000000 INFO @ Sat, 03 Apr 2021 09:04:43: 32000000 INFO @ Sat, 03 Apr 2021 09:04:46: 37000000 INFO @ Sat, 03 Apr 2021 09:04:49: 39000000 INFO @ Sat, 03 Apr 2021 09:04:50: 33000000 INFO @ Sat, 03 Apr 2021 09:04:53: 38000000 INFO @ Sat, 03 Apr 2021 09:04:56: 34000000 INFO @ Sat, 03 Apr 2021 09:04:56: 40000000 INFO @ Sat, 03 Apr 2021 09:04:59: 39000000 INFO @ Sat, 03 Apr 2021 09:05:03: 35000000 INFO @ Sat, 03 Apr 2021 09:05:03: 41000000 INFO @ Sat, 03 Apr 2021 09:05:06: 40000000 INFO @ Sat, 03 Apr 2021 09:05:09: 36000000 INFO @ Sat, 03 Apr 2021 09:05:10: 42000000 INFO @ Sat, 03 Apr 2021 09:05:12: 41000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 09:05:14: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 09:05:14: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 09:05:14: #1 total tags in treatment: 16587576 INFO @ Sat, 03 Apr 2021 09:05:14: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:05:14: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:05:14: #1 tags after filtering in treatment: 11077512 INFO @ Sat, 03 Apr 2021 09:05:14: #1 Redundant rate of treatment: 0.33 INFO @ Sat, 03 Apr 2021 09:05:14: #1 finished! INFO @ Sat, 03 Apr 2021 09:05:14: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:05:14: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:05:15: #2 number of paired peaks: 513 WARNING @ Sat, 03 Apr 2021 09:05:15: Fewer paired peaks (513) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 513 pairs to build model! INFO @ Sat, 03 Apr 2021 09:05:15: start model_add_line... INFO @ Sat, 03 Apr 2021 09:05:15: start X-correlation... INFO @ Sat, 03 Apr 2021 09:05:15: end of X-cor INFO @ Sat, 03 Apr 2021 09:05:15: #2 finished! INFO @ Sat, 03 Apr 2021 09:05:15: #2 predicted fragment length is 111 bps INFO @ Sat, 03 Apr 2021 09:05:15: #2 alternative fragment length(s) may be 111 bps INFO @ Sat, 03 Apr 2021 09:05:15: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX3029128/SRX3029128.05_model.r WARNING @ Sat, 03 Apr 2021 09:05:15: #2 Since the d (111) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:05:15: #2 You may need to consider one of the other alternative d(s): 111 WARNING @ Sat, 03 Apr 2021 09:05:15: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:05:15: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:05:15: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:05:15: 37000000 INFO @ Sat, 03 Apr 2021 09:05:18: 42000000 INFO @ Sat, 03 Apr 2021 09:05:21: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 09:05:21: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 09:05:21: #1 total tags in treatment: 16587576 INFO @ Sat, 03 Apr 2021 09:05:21: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:05:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:05:22: 38000000 INFO @ Sat, 03 Apr 2021 09:05:22: #1 tags after filtering in treatment: 11077512 INFO @ Sat, 03 Apr 2021 09:05:22: #1 Redundant rate of treatment: 0.33 INFO @ Sat, 03 Apr 2021 09:05:22: #1 finished! INFO @ Sat, 03 Apr 2021 09:05:22: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:05:22: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:05:22: #2 number of paired peaks: 513 WARNING @ Sat, 03 Apr 2021 09:05:22: Fewer paired peaks (513) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 513 pairs to build model! INFO @ Sat, 03 Apr 2021 09:05:22: start model_add_line... INFO @ Sat, 03 Apr 2021 09:05:23: start X-correlation... INFO @ Sat, 03 Apr 2021 09:05:23: end of X-cor INFO @ Sat, 03 Apr 2021 09:05:23: #2 finished! INFO @ Sat, 03 Apr 2021 09:05:23: #2 predicted fragment length is 111 bps INFO @ Sat, 03 Apr 2021 09:05:23: #2 alternative fragment length(s) may be 111 bps INFO @ Sat, 03 Apr 2021 09:05:23: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX3029128/SRX3029128.10_model.r WARNING @ Sat, 03 Apr 2021 09:05:23: #2 Since the d (111) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:05:23: #2 You may need to consider one of the other alternative d(s): 111 WARNING @ Sat, 03 Apr 2021 09:05:23: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:05:23: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:05:23: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:05:28: 39000000 INFO @ Sat, 03 Apr 2021 09:05:33: 40000000 INFO @ Sat, 03 Apr 2021 09:05:39: 41000000 INFO @ Sat, 03 Apr 2021 09:05:40: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:05:44: 42000000 INFO @ Sat, 03 Apr 2021 09:05:47: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:05:47: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 09:05:47: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 09:05:47: #1 total tags in treatment: 16587576 INFO @ Sat, 03 Apr 2021 09:05:47: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:05:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:05:48: #1 tags after filtering in treatment: 11077512 INFO @ Sat, 03 Apr 2021 09:05:48: #1 Redundant rate of treatment: 0.33 INFO @ Sat, 03 Apr 2021 09:05:48: #1 finished! INFO @ Sat, 03 Apr 2021 09:05:48: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:05:48: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:05:49: #2 number of paired peaks: 513 WARNING @ Sat, 03 Apr 2021 09:05:49: Fewer paired peaks (513) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 513 pairs to build model! INFO @ Sat, 03 Apr 2021 09:05:49: start model_add_line... INFO @ Sat, 03 Apr 2021 09:05:49: start X-correlation... INFO @ Sat, 03 Apr 2021 09:05:49: end of X-cor INFO @ Sat, 03 Apr 2021 09:05:49: #2 finished! INFO @ Sat, 03 Apr 2021 09:05:49: #2 predicted fragment length is 111 bps INFO @ Sat, 03 Apr 2021 09:05:49: #2 alternative fragment length(s) may be 111 bps INFO @ Sat, 03 Apr 2021 09:05:49: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX3029128/SRX3029128.20_model.r WARNING @ Sat, 03 Apr 2021 09:05:49: #2 Since the d (111) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:05:49: #2 You may need to consider one of the other alternative d(s): 111 WARNING @ Sat, 03 Apr 2021 09:05:49: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:05:49: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:05:49: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:05:53: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX3029128/SRX3029128.05_peaks.xls INFO @ Sat, 03 Apr 2021 09:05:53: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX3029128/SRX3029128.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:05:53: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX3029128/SRX3029128.05_summits.bed INFO @ Sat, 03 Apr 2021 09:05:53: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (8842 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 09:06:00: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX3029128/SRX3029128.10_peaks.xls INFO @ Sat, 03 Apr 2021 09:06:00: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX3029128/SRX3029128.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:06:00: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX3029128/SRX3029128.10_summits.bed INFO @ Sat, 03 Apr 2021 09:06:00: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (4924 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 09:06:14: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:06:28: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX3029128/SRX3029128.20_peaks.xls INFO @ Sat, 03 Apr 2021 09:06:28: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX3029128/SRX3029128.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:06:28: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX3029128/SRX3029128.20_summits.bed INFO @ Sat, 03 Apr 2021 09:06:28: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (2380 records, 4 fields): 4 millis CompletedMACS2peakCalling