Job ID = 6367199 SRX = SRX2978703 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-15T23:32:05 prefetch.2.10.7: 1) Downloading 'SRR5799210'... 2020-06-15T23:32:05 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:39:42 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:39:42 prefetch.2.10.7: 1) 'SRR5799210' was downloaded successfully 2020-06-15T23:39:42 prefetch.2.10.7: 'SRR5799210' has 0 unresolved dependencies Read 29741337 spots for SRR5799210/SRR5799210.sra Written 29741337 spots for SRR5799210/SRR5799210.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:26:57 29741337 reads; of these: 29741337 (100.00%) were paired; of these: 2678685 (9.01%) aligned concordantly 0 times 22268221 (74.87%) aligned concordantly exactly 1 time 4794431 (16.12%) aligned concordantly >1 times ---- 2678685 pairs aligned concordantly 0 times; of these: 1012371 (37.79%) aligned discordantly 1 time ---- 1666314 pairs aligned 0 times concordantly or discordantly; of these: 3332628 mates make up the pairs; of these: 2079805 (62.41%) aligned 0 times 769505 (23.09%) aligned exactly 1 time 483318 (14.50%) aligned >1 times 96.50% overall alignment rate Time searching: 00:26:57 Overall time: 00:26:57 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 1155055 / 28054967 = 0.0412 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 09:26:39: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX2978703/SRX2978703.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX2978703/SRX2978703.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX2978703/SRX2978703.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX2978703/SRX2978703.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 09:26:39: #1 read tag files... INFO @ Tue, 16 Jun 2020 09:26:39: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 09:26:44: 1000000 INFO @ Tue, 16 Jun 2020 09:26:48: 2000000 INFO @ Tue, 16 Jun 2020 09:26:53: 3000000 INFO @ Tue, 16 Jun 2020 09:26:58: 4000000 INFO @ Tue, 16 Jun 2020 09:27:02: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 09:27:07: 6000000 INFO @ Tue, 16 Jun 2020 09:27:09: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX2978703/SRX2978703.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX2978703/SRX2978703.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX2978703/SRX2978703.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX2978703/SRX2978703.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 09:27:09: #1 read tag files... INFO @ Tue, 16 Jun 2020 09:27:09: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 09:27:13: 7000000 INFO @ Tue, 16 Jun 2020 09:27:15: 1000000 INFO @ Tue, 16 Jun 2020 09:27:18: 8000000 INFO @ Tue, 16 Jun 2020 09:27:21: 2000000 INFO @ Tue, 16 Jun 2020 09:27:24: 9000000 INFO @ Tue, 16 Jun 2020 09:27:27: 3000000 INFO @ Tue, 16 Jun 2020 09:27:29: 10000000 INFO @ Tue, 16 Jun 2020 09:27:33: 4000000 INFO @ Tue, 16 Jun 2020 09:27:35: 11000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 09:27:39: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX2978703/SRX2978703.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX2978703/SRX2978703.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX2978703/SRX2978703.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX2978703/SRX2978703.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 09:27:39: #1 read tag files... INFO @ Tue, 16 Jun 2020 09:27:39: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 09:27:40: 5000000 INFO @ Tue, 16 Jun 2020 09:27:40: 12000000 INFO @ Tue, 16 Jun 2020 09:27:45: 1000000 INFO @ Tue, 16 Jun 2020 09:27:46: 6000000 INFO @ Tue, 16 Jun 2020 09:27:46: 13000000 INFO @ Tue, 16 Jun 2020 09:27:52: 14000000 INFO @ Tue, 16 Jun 2020 09:27:52: 2000000 INFO @ Tue, 16 Jun 2020 09:27:52: 7000000 INFO @ Tue, 16 Jun 2020 09:27:57: 15000000 INFO @ Tue, 16 Jun 2020 09:27:58: 3000000 INFO @ Tue, 16 Jun 2020 09:27:58: 8000000 INFO @ Tue, 16 Jun 2020 09:28:03: 16000000 INFO @ Tue, 16 Jun 2020 09:28:05: 4000000 INFO @ Tue, 16 Jun 2020 09:28:05: 9000000 INFO @ Tue, 16 Jun 2020 09:28:08: 17000000 INFO @ Tue, 16 Jun 2020 09:28:11: 5000000 INFO @ Tue, 16 Jun 2020 09:28:11: 10000000 INFO @ Tue, 16 Jun 2020 09:28:14: 18000000 INFO @ Tue, 16 Jun 2020 09:28:17: 6000000 INFO @ Tue, 16 Jun 2020 09:28:17: 11000000 INFO @ Tue, 16 Jun 2020 09:28:20: 19000000 INFO @ Tue, 16 Jun 2020 09:28:23: 7000000 INFO @ Tue, 16 Jun 2020 09:28:23: 12000000 INFO @ Tue, 16 Jun 2020 09:28:25: 20000000 INFO @ Tue, 16 Jun 2020 09:28:29: 8000000 INFO @ Tue, 16 Jun 2020 09:28:30: 13000000 INFO @ Tue, 16 Jun 2020 09:28:31: 21000000 INFO @ Tue, 16 Jun 2020 09:28:35: 9000000 INFO @ Tue, 16 Jun 2020 09:28:36: 14000000 INFO @ Tue, 16 Jun 2020 09:28:36: 22000000 INFO @ Tue, 16 Jun 2020 09:28:41: 10000000 INFO @ Tue, 16 Jun 2020 09:28:42: 23000000 INFO @ Tue, 16 Jun 2020 09:28:42: 15000000 INFO @ Tue, 16 Jun 2020 09:28:47: 24000000 INFO @ Tue, 16 Jun 2020 09:28:48: 11000000 INFO @ Tue, 16 Jun 2020 09:28:48: 16000000 INFO @ Tue, 16 Jun 2020 09:28:53: 25000000 INFO @ Tue, 16 Jun 2020 09:28:54: 12000000 INFO @ Tue, 16 Jun 2020 09:28:54: 17000000 INFO @ Tue, 16 Jun 2020 09:28:58: 26000000 INFO @ Tue, 16 Jun 2020 09:29:00: 13000000 INFO @ Tue, 16 Jun 2020 09:29:00: 18000000 INFO @ Tue, 16 Jun 2020 09:29:03: 27000000 INFO @ Tue, 16 Jun 2020 09:29:06: 14000000 INFO @ Tue, 16 Jun 2020 09:29:07: 19000000 INFO @ Tue, 16 Jun 2020 09:29:09: 28000000 INFO @ Tue, 16 Jun 2020 09:29:12: 15000000 INFO @ Tue, 16 Jun 2020 09:29:13: 20000000 INFO @ Tue, 16 Jun 2020 09:29:15: 29000000 INFO @ Tue, 16 Jun 2020 09:29:18: 16000000 INFO @ Tue, 16 Jun 2020 09:29:19: 21000000 INFO @ Tue, 16 Jun 2020 09:29:20: 30000000 INFO @ Tue, 16 Jun 2020 09:29:24: 17000000 INFO @ Tue, 16 Jun 2020 09:29:25: 22000000 INFO @ Tue, 16 Jun 2020 09:29:25: 31000000 INFO @ Tue, 16 Jun 2020 09:29:30: 18000000 INFO @ Tue, 16 Jun 2020 09:29:31: 32000000 INFO @ Tue, 16 Jun 2020 09:29:31: 23000000 INFO @ Tue, 16 Jun 2020 09:29:36: 19000000 INFO @ Tue, 16 Jun 2020 09:29:36: 33000000 INFO @ Tue, 16 Jun 2020 09:29:37: 24000000 INFO @ Tue, 16 Jun 2020 09:29:42: 34000000 INFO @ Tue, 16 Jun 2020 09:29:43: 20000000 INFO @ Tue, 16 Jun 2020 09:29:43: 25000000 INFO @ Tue, 16 Jun 2020 09:29:47: 35000000 INFO @ Tue, 16 Jun 2020 09:29:49: 21000000 INFO @ Tue, 16 Jun 2020 09:29:49: 26000000 INFO @ Tue, 16 Jun 2020 09:29:53: 36000000 INFO @ Tue, 16 Jun 2020 09:29:55: 22000000 INFO @ Tue, 16 Jun 2020 09:29:56: 27000000 INFO @ Tue, 16 Jun 2020 09:29:58: 37000000 INFO @ Tue, 16 Jun 2020 09:30:02: 23000000 INFO @ Tue, 16 Jun 2020 09:30:02: 28000000 INFO @ Tue, 16 Jun 2020 09:30:04: 38000000 INFO @ Tue, 16 Jun 2020 09:30:08: 29000000 INFO @ Tue, 16 Jun 2020 09:30:08: 24000000 INFO @ Tue, 16 Jun 2020 09:30:10: 39000000 INFO @ Tue, 16 Jun 2020 09:30:15: 30000000 INFO @ Tue, 16 Jun 2020 09:30:15: 25000000 INFO @ Tue, 16 Jun 2020 09:30:15: 40000000 INFO @ Tue, 16 Jun 2020 09:30:21: 41000000 INFO @ Tue, 16 Jun 2020 09:30:21: 31000000 INFO @ Tue, 16 Jun 2020 09:30:21: 26000000 INFO @ Tue, 16 Jun 2020 09:30:26: 42000000 INFO @ Tue, 16 Jun 2020 09:30:27: 32000000 INFO @ Tue, 16 Jun 2020 09:30:28: 27000000 INFO @ Tue, 16 Jun 2020 09:30:32: 43000000 INFO @ Tue, 16 Jun 2020 09:30:34: 33000000 INFO @ Tue, 16 Jun 2020 09:30:34: 28000000 INFO @ Tue, 16 Jun 2020 09:30:37: 44000000 INFO @ Tue, 16 Jun 2020 09:30:40: 34000000 INFO @ Tue, 16 Jun 2020 09:30:40: 29000000 INFO @ Tue, 16 Jun 2020 09:30:43: 45000000 INFO @ Tue, 16 Jun 2020 09:30:47: 35000000 INFO @ Tue, 16 Jun 2020 09:30:47: 30000000 INFO @ Tue, 16 Jun 2020 09:30:48: 46000000 INFO @ Tue, 16 Jun 2020 09:30:53: 36000000 INFO @ Tue, 16 Jun 2020 09:30:53: 31000000 INFO @ Tue, 16 Jun 2020 09:30:54: 47000000 INFO @ Tue, 16 Jun 2020 09:30:59: 37000000 INFO @ Tue, 16 Jun 2020 09:30:59: 48000000 INFO @ Tue, 16 Jun 2020 09:31:00: 32000000 INFO @ Tue, 16 Jun 2020 09:31:05: 49000000 INFO @ Tue, 16 Jun 2020 09:31:05: 38000000 INFO @ Tue, 16 Jun 2020 09:31:06: 33000000 INFO @ Tue, 16 Jun 2020 09:31:11: 50000000 INFO @ Tue, 16 Jun 2020 09:31:11: 39000000 INFO @ Tue, 16 Jun 2020 09:31:12: 34000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 09:31:16: 51000000 INFO @ Tue, 16 Jun 2020 09:31:17: 40000000 INFO @ Tue, 16 Jun 2020 09:31:19: 35000000 INFO @ Tue, 16 Jun 2020 09:31:22: 52000000 INFO @ Tue, 16 Jun 2020 09:31:24: 41000000 INFO @ Tue, 16 Jun 2020 09:31:25: 36000000 INFO @ Tue, 16 Jun 2020 09:31:28: 53000000 INFO @ Tue, 16 Jun 2020 09:31:30: 42000000 INFO @ Tue, 16 Jun 2020 09:31:31: 37000000 INFO @ Tue, 16 Jun 2020 09:31:33: 54000000 INFO @ Tue, 16 Jun 2020 09:31:36: 43000000 INFO @ Tue, 16 Jun 2020 09:31:37: 38000000 INFO @ Tue, 16 Jun 2020 09:31:39: 55000000 INFO @ Tue, 16 Jun 2020 09:31:40: #1 tag size is determined as 50 bps INFO @ Tue, 16 Jun 2020 09:31:40: #1 tag size = 50 INFO @ Tue, 16 Jun 2020 09:31:40: #1 total tags in treatment: 25914226 INFO @ Tue, 16 Jun 2020 09:31:40: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 09:31:40: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 09:31:40: #1 tags after filtering in treatment: 20547718 INFO @ Tue, 16 Jun 2020 09:31:40: #1 Redundant rate of treatment: 0.21 INFO @ Tue, 16 Jun 2020 09:31:40: #1 finished! INFO @ Tue, 16 Jun 2020 09:31:40: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 09:31:40: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 09:31:42: #2 number of paired peaks: 301 WARNING @ Tue, 16 Jun 2020 09:31:42: Fewer paired peaks (301) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 301 pairs to build model! INFO @ Tue, 16 Jun 2020 09:31:42: start model_add_line... INFO @ Tue, 16 Jun 2020 09:31:42: start X-correlation... INFO @ Tue, 16 Jun 2020 09:31:42: end of X-cor INFO @ Tue, 16 Jun 2020 09:31:42: #2 finished! INFO @ Tue, 16 Jun 2020 09:31:42: #2 predicted fragment length is 134 bps INFO @ Tue, 16 Jun 2020 09:31:42: #2 alternative fragment length(s) may be 3,134,139 bps INFO @ Tue, 16 Jun 2020 09:31:42: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX2978703/SRX2978703.05_model.r INFO @ Tue, 16 Jun 2020 09:31:42: #3 Call peaks... INFO @ Tue, 16 Jun 2020 09:31:42: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 09:31:42: 44000000 INFO @ Tue, 16 Jun 2020 09:31:44: 39000000 INFO @ Tue, 16 Jun 2020 09:31:48: 45000000 INFO @ Tue, 16 Jun 2020 09:31:49: 40000000 INFO @ Tue, 16 Jun 2020 09:31:54: 46000000 INFO @ Tue, 16 Jun 2020 09:31:55: 41000000 INFO @ Tue, 16 Jun 2020 09:31:59: 47000000 INFO @ Tue, 16 Jun 2020 09:32:01: 42000000 INFO @ Tue, 16 Jun 2020 09:32:05: 48000000 INFO @ Tue, 16 Jun 2020 09:32:07: 43000000 INFO @ Tue, 16 Jun 2020 09:32:10: 49000000 INFO @ Tue, 16 Jun 2020 09:32:12: 44000000 INFO @ Tue, 16 Jun 2020 09:32:16: 50000000 INFO @ Tue, 16 Jun 2020 09:32:18: 45000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 09:32:21: 51000000 INFO @ Tue, 16 Jun 2020 09:32:23: 46000000 INFO @ Tue, 16 Jun 2020 09:32:25: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 09:32:27: 52000000 INFO @ Tue, 16 Jun 2020 09:32:29: 47000000 INFO @ Tue, 16 Jun 2020 09:32:32: 53000000 INFO @ Tue, 16 Jun 2020 09:32:34: 48000000 INFO @ Tue, 16 Jun 2020 09:32:38: 54000000 INFO @ Tue, 16 Jun 2020 09:32:40: 49000000 INFO @ Tue, 16 Jun 2020 09:32:43: 55000000 INFO @ Tue, 16 Jun 2020 09:32:44: #1 tag size is determined as 50 bps INFO @ Tue, 16 Jun 2020 09:32:44: #1 tag size = 50 INFO @ Tue, 16 Jun 2020 09:32:44: #1 total tags in treatment: 25914226 INFO @ Tue, 16 Jun 2020 09:32:44: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 09:32:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 09:32:44: #1 tags after filtering in treatment: 20547718 INFO @ Tue, 16 Jun 2020 09:32:44: #1 Redundant rate of treatment: 0.21 INFO @ Tue, 16 Jun 2020 09:32:44: #1 finished! INFO @ Tue, 16 Jun 2020 09:32:44: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 09:32:44: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 09:32:46: #2 number of paired peaks: 301 WARNING @ Tue, 16 Jun 2020 09:32:46: Fewer paired peaks (301) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 301 pairs to build model! INFO @ Tue, 16 Jun 2020 09:32:46: start model_add_line... INFO @ Tue, 16 Jun 2020 09:32:46: 50000000 INFO @ Tue, 16 Jun 2020 09:32:46: start X-correlation... INFO @ Tue, 16 Jun 2020 09:32:46: end of X-cor INFO @ Tue, 16 Jun 2020 09:32:46: #2 finished! INFO @ Tue, 16 Jun 2020 09:32:46: #2 predicted fragment length is 134 bps INFO @ Tue, 16 Jun 2020 09:32:46: #2 alternative fragment length(s) may be 3,134,139 bps INFO @ Tue, 16 Jun 2020 09:32:46: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX2978703/SRX2978703.10_model.r INFO @ Tue, 16 Jun 2020 09:32:46: #3 Call peaks... INFO @ Tue, 16 Jun 2020 09:32:46: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 09:32:47: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX2978703/SRX2978703.05_peaks.xls INFO @ Tue, 16 Jun 2020 09:32:48: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX2978703/SRX2978703.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 09:32:48: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX2978703/SRX2978703.05_summits.bed INFO @ Tue, 16 Jun 2020 09:32:48: Done! pass1 - making usageList (7 chroms): 5 millis pass2 - checking and writing primary data (30802 records, 4 fields): 28 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 09:32:51: 51000000 INFO @ Tue, 16 Jun 2020 09:32:56: 52000000 INFO @ Tue, 16 Jun 2020 09:33:01: 53000000 INFO @ Tue, 16 Jun 2020 09:33:06: 54000000 INFO @ Tue, 16 Jun 2020 09:33:11: 55000000 INFO @ Tue, 16 Jun 2020 09:33:12: #1 tag size is determined as 50 bps INFO @ Tue, 16 Jun 2020 09:33:12: #1 tag size = 50 INFO @ Tue, 16 Jun 2020 09:33:12: #1 total tags in treatment: 25914226 INFO @ Tue, 16 Jun 2020 09:33:12: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 09:33:12: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 09:33:12: #1 tags after filtering in treatment: 20547718 INFO @ Tue, 16 Jun 2020 09:33:12: #1 Redundant rate of treatment: 0.21 INFO @ Tue, 16 Jun 2020 09:33:12: #1 finished! INFO @ Tue, 16 Jun 2020 09:33:12: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 09:33:12: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 09:33:14: #2 number of paired peaks: 301 WARNING @ Tue, 16 Jun 2020 09:33:14: Fewer paired peaks (301) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 301 pairs to build model! INFO @ Tue, 16 Jun 2020 09:33:14: start model_add_line... INFO @ Tue, 16 Jun 2020 09:33:14: start X-correlation... INFO @ Tue, 16 Jun 2020 09:33:14: end of X-cor INFO @ Tue, 16 Jun 2020 09:33:14: #2 finished! INFO @ Tue, 16 Jun 2020 09:33:14: #2 predicted fragment length is 134 bps INFO @ Tue, 16 Jun 2020 09:33:14: #2 alternative fragment length(s) may be 3,134,139 bps INFO @ Tue, 16 Jun 2020 09:33:14: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX2978703/SRX2978703.20_model.r INFO @ Tue, 16 Jun 2020 09:33:14: #3 Call peaks... INFO @ Tue, 16 Jun 2020 09:33:14: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 09:33:29: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 09:33:51: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX2978703/SRX2978703.10_peaks.xls INFO @ Tue, 16 Jun 2020 09:33:51: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX2978703/SRX2978703.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 09:33:51: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX2978703/SRX2978703.10_summits.bed INFO @ Tue, 16 Jun 2020 09:33:51: Done! pass1 - making usageList (7 chroms): 3 millis pass2 - checking and writing primary data (17778 records, 4 fields): 18 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 09:33:57: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 09:34:19: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX2978703/SRX2978703.20_peaks.xls INFO @ Tue, 16 Jun 2020 09:34:19: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX2978703/SRX2978703.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 09:34:19: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX2978703/SRX2978703.20_summits.bed INFO @ Tue, 16 Jun 2020 09:34:19: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (6234 records, 4 fields): 7 millis CompletedMACS2peakCalling