Job ID = 6366880 SRX = SRX246029 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-15T22:55:44 prefetch.2.10.7: 1) Downloading 'SRR766201'... 2020-06-15T22:55:44 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T22:56:19 prefetch.2.10.7: HTTPS download succeed 2020-06-15T22:56:19 prefetch.2.10.7: 'SRR766201' is valid 2020-06-15T22:56:19 prefetch.2.10.7: 1) 'SRR766201' was downloaded successfully Read 4000000 spots for SRR766201/SRR766201.sra Written 4000000 spots for SRR766201/SRR766201.sra 2020-06-15T22:56:51 prefetch.2.10.7: 1) Downloading 'SRR766202'... 2020-06-15T22:56:51 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T22:57:26 prefetch.2.10.7: HTTPS download succeed 2020-06-15T22:57:27 prefetch.2.10.7: 'SRR766202' is valid 2020-06-15T22:57:27 prefetch.2.10.7: 1) 'SRR766202' was downloaded successfully Read 4000000 spots for SRR766202/SRR766202.sra Written 4000000 spots for SRR766202/SRR766202.sra 2020-06-15T22:57:59 prefetch.2.10.7: 1) Downloading 'SRR766203'... 2020-06-15T22:57:59 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T22:58:40 prefetch.2.10.7: HTTPS download succeed 2020-06-15T22:58:40 prefetch.2.10.7: 'SRR766203' is valid 2020-06-15T22:58:40 prefetch.2.10.7: 1) 'SRR766203' was downloaded successfully Read 4000000 spots for SRR766203/SRR766203.sra Written 4000000 spots for SRR766203/SRR766203.sra 2020-06-15T22:59:13 prefetch.2.10.7: 1) Downloading 'SRR766204'... 2020-06-15T22:59:13 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T22:59:43 prefetch.2.10.7: HTTPS download succeed 2020-06-15T22:59:43 prefetch.2.10.7: 'SRR766204' is valid 2020-06-15T22:59:43 prefetch.2.10.7: 1) 'SRR766204' was downloaded successfully Read 4000000 spots for SRR766204/SRR766204.sra Written 4000000 spots for SRR766204/SRR766204.sra 2020-06-15T23:00:15 prefetch.2.10.7: 1) Downloading 'SRR766205'... 2020-06-15T23:00:15 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:00:52 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:00:52 prefetch.2.10.7: 'SRR766205' is valid 2020-06-15T23:00:52 prefetch.2.10.7: 1) 'SRR766205' was downloaded successfully Read 4000000 spots for SRR766205/SRR766205.sra Written 4000000 spots for SRR766205/SRR766205.sra 2020-06-15T23:01:24 prefetch.2.10.7: 1) Downloading 'SRR766206'... 2020-06-15T23:01:24 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:01:48 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:01:48 prefetch.2.10.7: 'SRR766206' is valid 2020-06-15T23:01:48 prefetch.2.10.7: 1) 'SRR766206' was downloaded successfully Read 4000000 spots for SRR766206/SRR766206.sra Written 4000000 spots for SRR766206/SRR766206.sra 2020-06-15T23:02:20 prefetch.2.10.7: 1) Downloading 'SRR766207'... 2020-06-15T23:02:20 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:02:48 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:02:48 prefetch.2.10.7: 'SRR766207' is valid 2020-06-15T23:02:48 prefetch.2.10.7: 1) 'SRR766207' was downloaded successfully Read 4000000 spots for SRR766207/SRR766207.sra Written 4000000 spots for SRR766207/SRR766207.sra 2020-06-15T23:03:21 prefetch.2.10.7: 1) Downloading 'SRR766208'... 2020-06-15T23:03:21 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:03:46 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:03:46 prefetch.2.10.7: 'SRR766208' is valid 2020-06-15T23:03:46 prefetch.2.10.7: 1) 'SRR766208' was downloaded successfully Read 4000000 spots for SRR766208/SRR766208.sra Written 4000000 spots for SRR766208/SRR766208.sra 2020-06-15T23:04:19 prefetch.2.10.7: 1) Downloading 'SRR766209'... 2020-06-15T23:04:19 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:04:52 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:04:52 prefetch.2.10.7: 'SRR766209' is valid 2020-06-15T23:04:52 prefetch.2.10.7: 1) 'SRR766209' was downloaded successfully Read 4000000 spots for SRR766209/SRR766209.sra Written 4000000 spots for SRR766209/SRR766209.sra 2020-06-15T23:05:25 prefetch.2.10.7: 1) Downloading 'SRR766210'... 2020-06-15T23:05:25 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:05:49 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:05:50 prefetch.2.10.7: 'SRR766210' is valid 2020-06-15T23:05:50 prefetch.2.10.7: 1) 'SRR766210' was downloaded successfully Read 4000000 spots for SRR766210/SRR766210.sra Written 4000000 spots for SRR766210/SRR766210.sra 2020-06-15T23:06:22 prefetch.2.10.7: 1) Downloading 'SRR766211'... 2020-06-15T23:06:22 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:06:57 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:06:57 prefetch.2.10.7: 'SRR766211' is valid 2020-06-15T23:06:57 prefetch.2.10.7: 1) 'SRR766211' was downloaded successfully Read 4000000 spots for SRR766211/SRR766211.sra Written 4000000 spots for SRR766211/SRR766211.sra 2020-06-15T23:07:29 prefetch.2.10.7: 1) Downloading 'SRR766212'... 2020-06-15T23:07:29 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:08:07 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:08:08 prefetch.2.10.7: 'SRR766212' is valid 2020-06-15T23:08:08 prefetch.2.10.7: 1) 'SRR766212' was downloaded successfully Read 4000000 spots for SRR766212/SRR766212.sra Written 4000000 spots for SRR766212/SRR766212.sra 2020-06-15T23:08:40 prefetch.2.10.7: 1) Downloading 'SRR766213'... 2020-06-15T23:08:40 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:09:22 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:09:22 prefetch.2.10.7: 'SRR766213' is valid 2020-06-15T23:09:22 prefetch.2.10.7: 1) 'SRR766213' was downloaded successfully Read 4000000 spots for SRR766213/SRR766213.sra Written 4000000 spots for SRR766213/SRR766213.sra 2020-06-15T23:09:54 prefetch.2.10.7: 1) Downloading 'SRR766214'... 2020-06-15T23:09:54 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:10:42 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:10:42 prefetch.2.10.7: 'SRR766214' is valid 2020-06-15T23:10:42 prefetch.2.10.7: 1) 'SRR766214' was downloaded successfully Read 4000000 spots for SRR766214/SRR766214.sra Written 4000000 spots for SRR766214/SRR766214.sra 2020-06-15T23:11:15 prefetch.2.10.7: 1) Downloading 'SRR766215'... 2020-06-15T23:11:15 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:12:14 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:12:14 prefetch.2.10.7: 'SRR766215' is valid 2020-06-15T23:12:14 prefetch.2.10.7: 1) 'SRR766215' was downloaded successfully Read 4000000 spots for SRR766215/SRR766215.sra Written 4000000 spots for SRR766215/SRR766215.sra 2020-06-15T23:12:46 prefetch.2.10.7: 1) Downloading 'SRR766216'... 2020-06-15T23:12:46 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:13:15 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:13:16 prefetch.2.10.7: 'SRR766216' is valid 2020-06-15T23:13:16 prefetch.2.10.7: 1) 'SRR766216' was downloaded successfully Read 4000000 spots for SRR766216/SRR766216.sra Written 4000000 spots for SRR766216/SRR766216.sra 2020-06-15T23:13:48 prefetch.2.10.7: 1) Downloading 'SRR766217'... 2020-06-15T23:13:48 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:14:20 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:14:21 prefetch.2.10.7: 'SRR766217' is valid 2020-06-15T23:14:21 prefetch.2.10.7: 1) 'SRR766217' was downloaded successfully Read 4000000 spots for SRR766217/SRR766217.sra Written 4000000 spots for SRR766217/SRR766217.sra 2020-06-15T23:14:53 prefetch.2.10.7: 1) Downloading 'SRR766218'... 2020-06-15T23:14:53 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:15:34 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:15:35 prefetch.2.10.7: 'SRR766218' is valid 2020-06-15T23:15:35 prefetch.2.10.7: 1) 'SRR766218' was downloaded successfully Read 4000000 spots for SRR766218/SRR766218.sra Written 4000000 spots for SRR766218/SRR766218.sra 2020-06-15T23:16:07 prefetch.2.10.7: 1) Downloading 'SRR766219'... 2020-06-15T23:16:07 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:16:44 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:16:44 prefetch.2.10.7: 'SRR766219' is valid 2020-06-15T23:16:44 prefetch.2.10.7: 1) 'SRR766219' was downloaded successfully Read 4000000 spots for SRR766219/SRR766219.sra Written 4000000 spots for SRR766219/SRR766219.sra 2020-06-15T23:17:17 prefetch.2.10.7: 1) Downloading 'SRR766220'... 2020-06-15T23:17:17 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:17:56 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:17:57 prefetch.2.10.7: 'SRR766220' is valid 2020-06-15T23:17:57 prefetch.2.10.7: 1) 'SRR766220' was downloaded successfully Read 4000000 spots for SRR766220/SRR766220.sra Written 4000000 spots for SRR766220/SRR766220.sra 2020-06-15T23:18:29 prefetch.2.10.7: 1) Downloading 'SRR766221'... 2020-06-15T23:18:29 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:18:54 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:18:54 prefetch.2.10.7: 'SRR766221' is valid 2020-06-15T23:18:54 prefetch.2.10.7: 1) 'SRR766221' was downloaded successfully Read 1996620 spots for SRR766221/SRR766221.sra Written 1996620 spots for SRR766221/SRR766221.sra 2020-06-15T23:19:16 prefetch.2.10.7: 1) Downloading 'SRR766222'... 2020-06-15T23:19:16 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:19:44 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:19:44 prefetch.2.10.7: 'SRR766222' is valid 2020-06-15T23:19:44 prefetch.2.10.7: 1) 'SRR766222' was downloaded successfully Read 4000000 spots for SRR766222/SRR766222.sra Written 4000000 spots for SRR766222/SRR766222.sra 2020-06-15T23:20:17 prefetch.2.10.7: 1) Downloading 'SRR766223'... 2020-06-15T23:20:17 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:20:44 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:20:44 prefetch.2.10.7: 'SRR766223' is valid 2020-06-15T23:20:44 prefetch.2.10.7: 1) 'SRR766223' was downloaded successfully Read 4000000 spots for SRR766223/SRR766223.sra Written 4000000 spots for SRR766223/SRR766223.sra 2020-06-15T23:21:17 prefetch.2.10.7: 1) Downloading 'SRR766224'... 2020-06-15T23:21:17 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:21:46 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:21:46 prefetch.2.10.7: 'SRR766224' is valid 2020-06-15T23:21:46 prefetch.2.10.7: 1) 'SRR766224' was downloaded successfully Read 4000000 spots for SRR766224/SRR766224.sra Written 4000000 spots for SRR766224/SRR766224.sra 2020-06-15T23:22:18 prefetch.2.10.7: 1) Downloading 'SRR766225'... 2020-06-15T23:22:18 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:22:51 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:22:51 prefetch.2.10.7: 'SRR766225' is valid 2020-06-15T23:22:51 prefetch.2.10.7: 1) 'SRR766225' was downloaded successfully Read 4000000 spots for SRR766225/SRR766225.sra Written 4000000 spots for SRR766225/SRR766225.sra 2020-06-15T23:23:23 prefetch.2.10.7: 1) Downloading 'SRR766226'... 2020-06-15T23:23:23 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:23:53 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:23:53 prefetch.2.10.7: 'SRR766226' is valid 2020-06-15T23:23:53 prefetch.2.10.7: 1) 'SRR766226' was downloaded successfully Read 4000000 spots for SRR766226/SRR766226.sra Written 4000000 spots for SRR766226/SRR766226.sra 2020-06-15T23:24:26 prefetch.2.10.7: 1) Downloading 'SRR766227'... 2020-06-15T23:24:26 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:24:59 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:24:59 prefetch.2.10.7: 'SRR766227' is valid 2020-06-15T23:24:59 prefetch.2.10.7: 1) 'SRR766227' was downloaded successfully Read 4000000 spots for SRR766227/SRR766227.sra Written 4000000 spots for SRR766227/SRR766227.sra 2020-06-15T23:25:32 prefetch.2.10.7: 1) Downloading 'SRR766228'... 2020-06-15T23:25:32 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:26:37 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:26:38 prefetch.2.10.7: 'SRR766228' is valid 2020-06-15T23:26:38 prefetch.2.10.7: 1) 'SRR766228' was downloaded successfully Read 4000000 spots for SRR766228/SRR766228.sra Written 4000000 spots for SRR766228/SRR766228.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:18:26 109996620 reads; of these: 109996620 (100.00%) were paired; of these: 29826878 (27.12%) aligned concordantly 0 times 68015124 (61.83%) aligned concordantly exactly 1 time 12154618 (11.05%) aligned concordantly >1 times ---- 29826878 pairs aligned concordantly 0 times; of these: 5744262 (19.26%) aligned discordantly 1 time ---- 24082616 pairs aligned 0 times concordantly or discordantly; of these: 48165232 mates make up the pairs; of these: 42932453 (89.14%) aligned 0 times 2950010 (6.12%) aligned exactly 1 time 2282769 (4.74%) aligned >1 times 80.48% overall alignment rate Time searching: 01:18:26 Overall time: 01:18:26 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 44 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 73071278 / 85843101 = 0.8512 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 10:12:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX246029/SRX246029.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX246029/SRX246029.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX246029/SRX246029.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX246029/SRX246029.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 10:12:31: #1 read tag files... INFO @ Tue, 16 Jun 2020 10:12:31: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 10:12:35: 1000000 INFO @ Tue, 16 Jun 2020 10:12:40: 2000000 INFO @ Tue, 16 Jun 2020 10:12:44: 3000000 INFO @ Tue, 16 Jun 2020 10:12:49: 4000000 INFO @ Tue, 16 Jun 2020 10:12:53: 5000000 INFO @ Tue, 16 Jun 2020 10:12:58: 6000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 10:13:01: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX246029/SRX246029.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX246029/SRX246029.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX246029/SRX246029.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX246029/SRX246029.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 10:13:01: #1 read tag files... INFO @ Tue, 16 Jun 2020 10:13:01: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 10:13:02: 7000000 INFO @ Tue, 16 Jun 2020 10:13:06: 1000000 INFO @ Tue, 16 Jun 2020 10:13:08: 8000000 INFO @ Tue, 16 Jun 2020 10:13:11: 2000000 INFO @ Tue, 16 Jun 2020 10:13:13: 9000000 INFO @ Tue, 16 Jun 2020 10:13:16: 3000000 INFO @ Tue, 16 Jun 2020 10:13:18: 10000000 INFO @ Tue, 16 Jun 2020 10:13:21: 4000000 INFO @ Tue, 16 Jun 2020 10:13:23: 11000000 INFO @ Tue, 16 Jun 2020 10:13:26: 5000000 INFO @ Tue, 16 Jun 2020 10:13:28: 12000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 10:13:31: 6000000 INFO @ Tue, 16 Jun 2020 10:13:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX246029/SRX246029.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX246029/SRX246029.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX246029/SRX246029.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX246029/SRX246029.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 10:13:31: #1 read tag files... INFO @ Tue, 16 Jun 2020 10:13:31: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 10:13:33: 13000000 INFO @ Tue, 16 Jun 2020 10:13:36: 7000000 INFO @ Tue, 16 Jun 2020 10:13:36: 1000000 INFO @ Tue, 16 Jun 2020 10:13:38: 14000000 INFO @ Tue, 16 Jun 2020 10:13:42: 8000000 INFO @ Tue, 16 Jun 2020 10:13:42: 2000000 INFO @ Tue, 16 Jun 2020 10:13:44: 15000000 INFO @ Tue, 16 Jun 2020 10:13:47: 9000000 INFO @ Tue, 16 Jun 2020 10:13:47: 3000000 INFO @ Tue, 16 Jun 2020 10:13:49: 16000000 INFO @ Tue, 16 Jun 2020 10:13:53: 4000000 INFO @ Tue, 16 Jun 2020 10:13:53: 10000000 INFO @ Tue, 16 Jun 2020 10:13:55: 17000000 INFO @ Tue, 16 Jun 2020 10:13:58: 5000000 INFO @ Tue, 16 Jun 2020 10:13:58: 11000000 INFO @ Tue, 16 Jun 2020 10:14:00: 18000000 INFO @ Tue, 16 Jun 2020 10:14:04: 6000000 INFO @ Tue, 16 Jun 2020 10:14:04: 12000000 INFO @ Tue, 16 Jun 2020 10:14:06: 19000000 INFO @ Tue, 16 Jun 2020 10:14:09: 7000000 INFO @ Tue, 16 Jun 2020 10:14:09: 13000000 INFO @ Tue, 16 Jun 2020 10:14:11: 20000000 INFO @ Tue, 16 Jun 2020 10:14:15: 8000000 INFO @ Tue, 16 Jun 2020 10:14:15: 14000000 INFO @ Tue, 16 Jun 2020 10:14:17: 21000000 INFO @ Tue, 16 Jun 2020 10:14:20: 9000000 INFO @ Tue, 16 Jun 2020 10:14:20: 15000000 INFO @ Tue, 16 Jun 2020 10:14:22: 22000000 INFO @ Tue, 16 Jun 2020 10:14:26: 16000000 INFO @ Tue, 16 Jun 2020 10:14:26: 10000000 INFO @ Tue, 16 Jun 2020 10:14:28: 23000000 INFO @ Tue, 16 Jun 2020 10:14:31: 17000000 INFO @ Tue, 16 Jun 2020 10:14:31: 11000000 INFO @ Tue, 16 Jun 2020 10:14:33: 24000000 INFO @ Tue, 16 Jun 2020 10:14:37: 18000000 INFO @ Tue, 16 Jun 2020 10:14:37: 12000000 INFO @ Tue, 16 Jun 2020 10:14:39: 25000000 INFO @ Tue, 16 Jun 2020 10:14:43: 19000000 INFO @ Tue, 16 Jun 2020 10:14:43: 13000000 INFO @ Tue, 16 Jun 2020 10:14:44: 26000000 INFO @ Tue, 16 Jun 2020 10:14:48: 14000000 INFO @ Tue, 16 Jun 2020 10:14:48: 20000000 INFO @ Tue, 16 Jun 2020 10:14:50: 27000000 INFO @ Tue, 16 Jun 2020 10:14:54: 15000000 INFO @ Tue, 16 Jun 2020 10:14:54: 21000000 INFO @ Tue, 16 Jun 2020 10:14:56: 28000000 INFO @ Tue, 16 Jun 2020 10:15:00: 16000000 INFO @ Tue, 16 Jun 2020 10:15:00: 22000000 INFO @ Tue, 16 Jun 2020 10:15:02: 29000000 INFO @ Tue, 16 Jun 2020 10:15:06: 17000000 INFO @ Tue, 16 Jun 2020 10:15:06: 23000000 INFO @ Tue, 16 Jun 2020 10:15:08: 30000000 INFO @ Tue, 16 Jun 2020 10:15:12: 18000000 INFO @ Tue, 16 Jun 2020 10:15:12: 24000000 INFO @ Tue, 16 Jun 2020 10:15:13: #1 tag size is determined as 24 bps INFO @ Tue, 16 Jun 2020 10:15:13: #1 tag size = 24 INFO @ Tue, 16 Jun 2020 10:15:13: #1 total tags in treatment: 11114098 INFO @ Tue, 16 Jun 2020 10:15:13: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 10:15:13: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 10:15:13: #1 tags after filtering in treatment: 7928305 INFO @ Tue, 16 Jun 2020 10:15:13: #1 Redundant rate of treatment: 0.29 INFO @ Tue, 16 Jun 2020 10:15:13: #1 finished! INFO @ Tue, 16 Jun 2020 10:15:13: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 10:15:13: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 10:15:14: #2 number of paired peaks: 1400 INFO @ Tue, 16 Jun 2020 10:15:14: start model_add_line... INFO @ Tue, 16 Jun 2020 10:15:14: start X-correlation... INFO @ Tue, 16 Jun 2020 10:15:14: end of X-cor INFO @ Tue, 16 Jun 2020 10:15:14: #2 finished! INFO @ Tue, 16 Jun 2020 10:15:14: #2 predicted fragment length is 79 bps INFO @ Tue, 16 Jun 2020 10:15:14: #2 alternative fragment length(s) may be 2,79 bps INFO @ Tue, 16 Jun 2020 10:15:14: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX246029/SRX246029.05_model.r INFO @ Tue, 16 Jun 2020 10:15:14: #3 Call peaks... INFO @ Tue, 16 Jun 2020 10:15:14: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 10:15:18: 19000000 INFO @ Tue, 16 Jun 2020 10:15:18: 25000000 INFO @ Tue, 16 Jun 2020 10:15:24: 20000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 10:15:24: 26000000 INFO @ Tue, 16 Jun 2020 10:15:29: 21000000 INFO @ Tue, 16 Jun 2020 10:15:30: 27000000 INFO @ Tue, 16 Jun 2020 10:15:31: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 10:15:35: 22000000 INFO @ Tue, 16 Jun 2020 10:15:35: 28000000 INFO @ Tue, 16 Jun 2020 10:15:39: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX246029/SRX246029.05_peaks.xls INFO @ Tue, 16 Jun 2020 10:15:39: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX246029/SRX246029.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 10:15:39: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX246029/SRX246029.05_summits.bed INFO @ Tue, 16 Jun 2020 10:15:39: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (1677 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 10:15:41: 23000000 INFO @ Tue, 16 Jun 2020 10:15:41: 29000000 INFO @ Tue, 16 Jun 2020 10:15:47: 24000000 INFO @ Tue, 16 Jun 2020 10:15:47: 30000000 INFO @ Tue, 16 Jun 2020 10:15:53: #1 tag size is determined as 24 bps INFO @ Tue, 16 Jun 2020 10:15:53: #1 tag size = 24 INFO @ Tue, 16 Jun 2020 10:15:53: #1 total tags in treatment: 11114098 INFO @ Tue, 16 Jun 2020 10:15:53: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 10:15:53: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 10:15:53: 25000000 INFO @ Tue, 16 Jun 2020 10:15:53: #1 tags after filtering in treatment: 7928305 INFO @ Tue, 16 Jun 2020 10:15:53: #1 Redundant rate of treatment: 0.29 INFO @ Tue, 16 Jun 2020 10:15:53: #1 finished! INFO @ Tue, 16 Jun 2020 10:15:53: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 10:15:53: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 10:15:54: #2 number of paired peaks: 1400 INFO @ Tue, 16 Jun 2020 10:15:54: start model_add_line... INFO @ Tue, 16 Jun 2020 10:15:54: start X-correlation... INFO @ Tue, 16 Jun 2020 10:15:54: end of X-cor INFO @ Tue, 16 Jun 2020 10:15:54: #2 finished! INFO @ Tue, 16 Jun 2020 10:15:54: #2 predicted fragment length is 79 bps INFO @ Tue, 16 Jun 2020 10:15:54: #2 alternative fragment length(s) may be 2,79 bps INFO @ Tue, 16 Jun 2020 10:15:54: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX246029/SRX246029.10_model.r INFO @ Tue, 16 Jun 2020 10:15:54: #3 Call peaks... INFO @ Tue, 16 Jun 2020 10:15:54: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 10:15:59: 26000000 INFO @ Tue, 16 Jun 2020 10:16:05: 27000000 INFO @ Tue, 16 Jun 2020 10:16:10: 28000000 INFO @ Tue, 16 Jun 2020 10:16:11: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 10:16:16: 29000000 INFO @ Tue, 16 Jun 2020 10:16:19: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX246029/SRX246029.10_peaks.xls INFO @ Tue, 16 Jun 2020 10:16:19: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX246029/SRX246029.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 10:16:19: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX246029/SRX246029.10_summits.bed INFO @ Tue, 16 Jun 2020 10:16:19: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (704 records, 4 fields): 2 millis CompletedMACS2peakCalling BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 10:16:22: 30000000 INFO @ Tue, 16 Jun 2020 10:16:28: #1 tag size is determined as 24 bps INFO @ Tue, 16 Jun 2020 10:16:28: #1 tag size = 24 INFO @ Tue, 16 Jun 2020 10:16:28: #1 total tags in treatment: 11114098 INFO @ Tue, 16 Jun 2020 10:16:28: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 10:16:28: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 10:16:28: #1 tags after filtering in treatment: 7928305 INFO @ Tue, 16 Jun 2020 10:16:28: #1 Redundant rate of treatment: 0.29 INFO @ Tue, 16 Jun 2020 10:16:28: #1 finished! INFO @ Tue, 16 Jun 2020 10:16:28: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 10:16:28: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 10:16:29: #2 number of paired peaks: 1400 INFO @ Tue, 16 Jun 2020 10:16:29: start model_add_line... INFO @ Tue, 16 Jun 2020 10:16:29: start X-correlation... INFO @ Tue, 16 Jun 2020 10:16:29: end of X-cor INFO @ Tue, 16 Jun 2020 10:16:29: #2 finished! INFO @ Tue, 16 Jun 2020 10:16:29: #2 predicted fragment length is 79 bps INFO @ Tue, 16 Jun 2020 10:16:29: #2 alternative fragment length(s) may be 2,79 bps INFO @ Tue, 16 Jun 2020 10:16:29: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX246029/SRX246029.20_model.r INFO @ Tue, 16 Jun 2020 10:16:29: #3 Call peaks... INFO @ Tue, 16 Jun 2020 10:16:29: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 10:16:46: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 10:16:54: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX246029/SRX246029.20_peaks.xls INFO @ Tue, 16 Jun 2020 10:16:54: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX246029/SRX246029.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 10:16:54: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX246029/SRX246029.20_summits.bed INFO @ Tue, 16 Jun 2020 10:16:54: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (359 records, 4 fields): 2 millis CompletedMACS2peakCalling