Job ID = 6507736 SRX = SRX1995024 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-26T14:06:11 prefetch.2.10.7: 1) Downloading 'SRR3993956'... 2020-06-26T14:06:11 prefetch.2.10.7: Downloading via HTTPS... 2020-06-26T14:09:39 prefetch.2.10.7: HTTPS download succeed 2020-06-26T14:09:39 prefetch.2.10.7: 1) 'SRR3993956' was downloaded successfully Read 23670218 spots for SRR3993956/SRR3993956.sra Written 23670218 spots for SRR3993956/SRR3993956.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:26:59 23670218 reads; of these: 23670218 (100.00%) were paired; of these: 1367755 (5.78%) aligned concordantly 0 times 19156192 (80.93%) aligned concordantly exactly 1 time 3146271 (13.29%) aligned concordantly >1 times ---- 1367755 pairs aligned concordantly 0 times; of these: 848376 (62.03%) aligned discordantly 1 time ---- 519379 pairs aligned 0 times concordantly or discordantly; of these: 1038758 mates make up the pairs; of these: 515326 (49.61%) aligned 0 times 294791 (28.38%) aligned exactly 1 time 228641 (22.01%) aligned >1 times 98.91% overall alignment rate Time searching: 00:27:00 Overall time: 00:27:00 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 20 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 326684 / 23136977 = 0.0141 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 26 Jun 2020 23:54:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX1995024/SRX1995024.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX1995024/SRX1995024.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX1995024/SRX1995024.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX1995024/SRX1995024.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 26 Jun 2020 23:54:26: #1 read tag files... INFO @ Fri, 26 Jun 2020 23:54:26: #1 read treatment tags... INFO @ Fri, 26 Jun 2020 23:54:33: 1000000 INFO @ Fri, 26 Jun 2020 23:54:41: 2000000 INFO @ Fri, 26 Jun 2020 23:54:48: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 26 Jun 2020 23:54:56: 4000000 INFO @ Fri, 26 Jun 2020 23:54:56: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX1995024/SRX1995024.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX1995024/SRX1995024.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX1995024/SRX1995024.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX1995024/SRX1995024.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 26 Jun 2020 23:54:56: #1 read tag files... INFO @ Fri, 26 Jun 2020 23:54:56: #1 read treatment tags... INFO @ Fri, 26 Jun 2020 23:55:04: 5000000 INFO @ Fri, 26 Jun 2020 23:55:04: 1000000 INFO @ Fri, 26 Jun 2020 23:55:12: 6000000 INFO @ Fri, 26 Jun 2020 23:55:12: 2000000 INFO @ Fri, 26 Jun 2020 23:55:20: 3000000 INFO @ Fri, 26 Jun 2020 23:55:20: 7000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 26 Jun 2020 23:55:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX1995024/SRX1995024.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX1995024/SRX1995024.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX1995024/SRX1995024.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX1995024/SRX1995024.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 26 Jun 2020 23:55:26: #1 read tag files... INFO @ Fri, 26 Jun 2020 23:55:26: #1 read treatment tags... INFO @ Fri, 26 Jun 2020 23:55:27: 4000000 INFO @ Fri, 26 Jun 2020 23:55:28: 8000000 INFO @ Fri, 26 Jun 2020 23:55:33: 1000000 INFO @ Fri, 26 Jun 2020 23:55:36: 5000000 INFO @ Fri, 26 Jun 2020 23:55:36: 9000000 INFO @ Fri, 26 Jun 2020 23:55:41: 2000000 INFO @ Fri, 26 Jun 2020 23:55:44: 6000000 INFO @ Fri, 26 Jun 2020 23:55:44: 10000000 INFO @ Fri, 26 Jun 2020 23:55:48: 3000000 INFO @ Fri, 26 Jun 2020 23:55:52: 7000000 INFO @ Fri, 26 Jun 2020 23:55:53: 11000000 INFO @ Fri, 26 Jun 2020 23:55:55: 4000000 INFO @ Fri, 26 Jun 2020 23:56:00: 8000000 INFO @ Fri, 26 Jun 2020 23:56:01: 12000000 INFO @ Fri, 26 Jun 2020 23:56:02: 5000000 INFO @ Fri, 26 Jun 2020 23:56:08: 9000000 INFO @ Fri, 26 Jun 2020 23:56:09: 13000000 INFO @ Fri, 26 Jun 2020 23:56:10: 6000000 INFO @ Fri, 26 Jun 2020 23:56:16: 10000000 INFO @ Fri, 26 Jun 2020 23:56:17: 7000000 INFO @ Fri, 26 Jun 2020 23:56:17: 14000000 INFO @ Fri, 26 Jun 2020 23:56:24: 11000000 INFO @ Fri, 26 Jun 2020 23:56:24: 8000000 INFO @ Fri, 26 Jun 2020 23:56:26: 15000000 INFO @ Fri, 26 Jun 2020 23:56:32: 9000000 INFO @ Fri, 26 Jun 2020 23:56:32: 12000000 INFO @ Fri, 26 Jun 2020 23:56:34: 16000000 INFO @ Fri, 26 Jun 2020 23:56:39: 10000000 INFO @ Fri, 26 Jun 2020 23:56:40: 13000000 INFO @ Fri, 26 Jun 2020 23:56:42: 17000000 INFO @ Fri, 26 Jun 2020 23:56:46: 11000000 INFO @ Fri, 26 Jun 2020 23:56:48: 14000000 INFO @ Fri, 26 Jun 2020 23:56:50: 18000000 INFO @ Fri, 26 Jun 2020 23:56:54: 12000000 INFO @ Fri, 26 Jun 2020 23:56:56: 15000000 INFO @ Fri, 26 Jun 2020 23:56:58: 19000000 INFO @ Fri, 26 Jun 2020 23:57:01: 13000000 INFO @ Fri, 26 Jun 2020 23:57:04: 16000000 INFO @ Fri, 26 Jun 2020 23:57:07: 20000000 INFO @ Fri, 26 Jun 2020 23:57:08: 14000000 INFO @ Fri, 26 Jun 2020 23:57:12: 17000000 INFO @ Fri, 26 Jun 2020 23:57:15: 21000000 INFO @ Fri, 26 Jun 2020 23:57:15: 15000000 INFO @ Fri, 26 Jun 2020 23:57:20: 18000000 INFO @ Fri, 26 Jun 2020 23:57:23: 16000000 INFO @ Fri, 26 Jun 2020 23:57:23: 22000000 INFO @ Fri, 26 Jun 2020 23:57:28: 19000000 INFO @ Fri, 26 Jun 2020 23:57:30: 17000000 INFO @ Fri, 26 Jun 2020 23:57:32: 23000000 INFO @ Fri, 26 Jun 2020 23:57:36: 20000000 INFO @ Fri, 26 Jun 2020 23:57:37: 18000000 INFO @ Fri, 26 Jun 2020 23:57:40: 24000000 INFO @ Fri, 26 Jun 2020 23:57:44: 21000000 INFO @ Fri, 26 Jun 2020 23:57:45: 19000000 INFO @ Fri, 26 Jun 2020 23:57:48: 25000000 INFO @ Fri, 26 Jun 2020 23:57:52: 20000000 INFO @ Fri, 26 Jun 2020 23:57:52: 22000000 INFO @ Fri, 26 Jun 2020 23:57:56: 26000000 INFO @ Fri, 26 Jun 2020 23:57:59: 21000000 INFO @ Fri, 26 Jun 2020 23:58:00: 23000000 INFO @ Fri, 26 Jun 2020 23:58:05: 27000000 INFO @ Fri, 26 Jun 2020 23:58:06: 22000000 INFO @ Fri, 26 Jun 2020 23:58:08: 24000000 INFO @ Fri, 26 Jun 2020 23:58:13: 28000000 INFO @ Fri, 26 Jun 2020 23:58:13: 23000000 INFO @ Fri, 26 Jun 2020 23:58:15: 25000000 INFO @ Fri, 26 Jun 2020 23:58:21: 24000000 INFO @ Fri, 26 Jun 2020 23:58:21: 29000000 INFO @ Fri, 26 Jun 2020 23:58:23: 26000000 INFO @ Fri, 26 Jun 2020 23:58:28: 25000000 INFO @ Fri, 26 Jun 2020 23:58:29: 30000000 INFO @ Fri, 26 Jun 2020 23:58:31: 27000000 INFO @ Fri, 26 Jun 2020 23:58:35: 26000000 INFO @ Fri, 26 Jun 2020 23:58:38: 31000000 INFO @ Fri, 26 Jun 2020 23:58:39: 28000000 INFO @ Fri, 26 Jun 2020 23:58:42: 27000000 INFO @ Fri, 26 Jun 2020 23:58:46: 32000000 INFO @ Fri, 26 Jun 2020 23:58:46: 29000000 INFO @ Fri, 26 Jun 2020 23:58:50: 28000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 26 Jun 2020 23:58:54: 30000000 INFO @ Fri, 26 Jun 2020 23:58:54: 33000000 INFO @ Fri, 26 Jun 2020 23:58:57: 29000000 INFO @ Fri, 26 Jun 2020 23:59:01: 31000000 INFO @ Fri, 26 Jun 2020 23:59:03: 34000000 INFO @ Fri, 26 Jun 2020 23:59:04: 30000000 INFO @ Fri, 26 Jun 2020 23:59:09: 32000000 INFO @ Fri, 26 Jun 2020 23:59:11: 35000000 INFO @ Fri, 26 Jun 2020 23:59:12: 31000000 INFO @ Fri, 26 Jun 2020 23:59:17: 33000000 INFO @ Fri, 26 Jun 2020 23:59:19: 32000000 INFO @ Fri, 26 Jun 2020 23:59:19: 36000000 INFO @ Fri, 26 Jun 2020 23:59:25: 34000000 INFO @ Fri, 26 Jun 2020 23:59:26: 33000000 INFO @ Fri, 26 Jun 2020 23:59:28: 37000000 INFO @ Fri, 26 Jun 2020 23:59:32: 35000000 INFO @ Fri, 26 Jun 2020 23:59:33: 34000000 INFO @ Fri, 26 Jun 2020 23:59:36: 38000000 INFO @ Fri, 26 Jun 2020 23:59:40: 36000000 INFO @ Fri, 26 Jun 2020 23:59:41: 35000000 INFO @ Fri, 26 Jun 2020 23:59:44: 39000000 INFO @ Fri, 26 Jun 2020 23:59:48: 36000000 INFO @ Fri, 26 Jun 2020 23:59:48: 37000000 INFO @ Fri, 26 Jun 2020 23:59:52: 40000000 INFO @ Fri, 26 Jun 2020 23:59:55: 37000000 INFO @ Fri, 26 Jun 2020 23:59:56: 38000000 INFO @ Sat, 27 Jun 2020 00:00:00: 41000000 INFO @ Sat, 27 Jun 2020 00:00:02: 38000000 INFO @ Sat, 27 Jun 2020 00:00:03: 39000000 INFO @ Sat, 27 Jun 2020 00:00:08: 42000000 BigWig に変換しました。 INFO @ Sat, 27 Jun 2020 00:00:10: 39000000 INFO @ Sat, 27 Jun 2020 00:00:11: 40000000 INFO @ Sat, 27 Jun 2020 00:00:17: 43000000 INFO @ Sat, 27 Jun 2020 00:00:17: 40000000 INFO @ Sat, 27 Jun 2020 00:00:18: 41000000 INFO @ Sat, 27 Jun 2020 00:00:24: 41000000 INFO @ Sat, 27 Jun 2020 00:00:25: 44000000 INFO @ Sat, 27 Jun 2020 00:00:25: 42000000 INFO @ Sat, 27 Jun 2020 00:00:32: 42000000 INFO @ Sat, 27 Jun 2020 00:00:33: 43000000 INFO @ Sat, 27 Jun 2020 00:00:33: 45000000 INFO @ Sat, 27 Jun 2020 00:00:39: 43000000 INFO @ Sat, 27 Jun 2020 00:00:40: 44000000 INFO @ Sat, 27 Jun 2020 00:00:41: 46000000 INFO @ Sat, 27 Jun 2020 00:00:42: #1 tag size is determined as 50 bps INFO @ Sat, 27 Jun 2020 00:00:42: #1 tag size = 50 INFO @ Sat, 27 Jun 2020 00:00:42: #1 total tags in treatment: 21980217 INFO @ Sat, 27 Jun 2020 00:00:42: #1 user defined the maximum tags... INFO @ Sat, 27 Jun 2020 00:00:42: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 27 Jun 2020 00:00:43: #1 tags after filtering in treatment: 19778376 INFO @ Sat, 27 Jun 2020 00:00:43: #1 Redundant rate of treatment: 0.10 INFO @ Sat, 27 Jun 2020 00:00:43: #1 finished! INFO @ Sat, 27 Jun 2020 00:00:43: #2 Build Peak Model... INFO @ Sat, 27 Jun 2020 00:00:43: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 27 Jun 2020 00:00:44: #2 number of paired peaks: 249 WARNING @ Sat, 27 Jun 2020 00:00:44: Fewer paired peaks (249) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 249 pairs to build model! INFO @ Sat, 27 Jun 2020 00:00:44: start model_add_line... INFO @ Sat, 27 Jun 2020 00:00:44: start X-correlation... INFO @ Sat, 27 Jun 2020 00:00:44: end of X-cor INFO @ Sat, 27 Jun 2020 00:00:44: #2 finished! INFO @ Sat, 27 Jun 2020 00:00:44: #2 predicted fragment length is 137 bps INFO @ Sat, 27 Jun 2020 00:00:44: #2 alternative fragment length(s) may be 3,137,150,162 bps INFO @ Sat, 27 Jun 2020 00:00:44: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX1995024/SRX1995024.05_model.r INFO @ Sat, 27 Jun 2020 00:00:44: #3 Call peaks... INFO @ Sat, 27 Jun 2020 00:00:44: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 27 Jun 2020 00:00:46: 44000000 INFO @ Sat, 27 Jun 2020 00:00:47: 45000000 INFO @ Sat, 27 Jun 2020 00:00:53: 45000000 INFO @ Sat, 27 Jun 2020 00:00:54: 46000000 INFO @ Sat, 27 Jun 2020 00:00:55: #1 tag size is determined as 50 bps INFO @ Sat, 27 Jun 2020 00:00:55: #1 tag size = 50 INFO @ Sat, 27 Jun 2020 00:00:55: #1 total tags in treatment: 21980217 INFO @ Sat, 27 Jun 2020 00:00:55: #1 user defined the maximum tags... INFO @ Sat, 27 Jun 2020 00:00:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 27 Jun 2020 00:00:55: #1 tags after filtering in treatment: 19778376 INFO @ Sat, 27 Jun 2020 00:00:55: #1 Redundant rate of treatment: 0.10 INFO @ Sat, 27 Jun 2020 00:00:55: #1 finished! INFO @ Sat, 27 Jun 2020 00:00:55: #2 Build Peak Model... INFO @ Sat, 27 Jun 2020 00:00:55: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 27 Jun 2020 00:00:57: #2 number of paired peaks: 249 WARNING @ Sat, 27 Jun 2020 00:00:57: Fewer paired peaks (249) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 249 pairs to build model! INFO @ Sat, 27 Jun 2020 00:00:57: start model_add_line... INFO @ Sat, 27 Jun 2020 00:00:57: start X-correlation... INFO @ Sat, 27 Jun 2020 00:00:57: end of X-cor INFO @ Sat, 27 Jun 2020 00:00:57: #2 finished! INFO @ Sat, 27 Jun 2020 00:00:57: #2 predicted fragment length is 137 bps INFO @ Sat, 27 Jun 2020 00:00:57: #2 alternative fragment length(s) may be 3,137,150,162 bps INFO @ Sat, 27 Jun 2020 00:00:57: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX1995024/SRX1995024.10_model.r INFO @ Sat, 27 Jun 2020 00:00:57: #3 Call peaks... INFO @ Sat, 27 Jun 2020 00:00:57: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 27 Jun 2020 00:00:59: 46000000 INFO @ Sat, 27 Jun 2020 00:01:00: #1 tag size is determined as 50 bps INFO @ Sat, 27 Jun 2020 00:01:00: #1 tag size = 50 INFO @ Sat, 27 Jun 2020 00:01:00: #1 total tags in treatment: 21980217 INFO @ Sat, 27 Jun 2020 00:01:00: #1 user defined the maximum tags... INFO @ Sat, 27 Jun 2020 00:01:00: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 27 Jun 2020 00:01:01: #1 tags after filtering in treatment: 19778376 INFO @ Sat, 27 Jun 2020 00:01:01: #1 Redundant rate of treatment: 0.10 INFO @ Sat, 27 Jun 2020 00:01:01: #1 finished! INFO @ Sat, 27 Jun 2020 00:01:01: #2 Build Peak Model... INFO @ Sat, 27 Jun 2020 00:01:01: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 27 Jun 2020 00:01:02: #2 number of paired peaks: 249 WARNING @ Sat, 27 Jun 2020 00:01:02: Fewer paired peaks (249) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 249 pairs to build model! INFO @ Sat, 27 Jun 2020 00:01:02: start model_add_line... INFO @ Sat, 27 Jun 2020 00:01:02: start X-correlation... INFO @ Sat, 27 Jun 2020 00:01:02: end of X-cor INFO @ Sat, 27 Jun 2020 00:01:02: #2 finished! INFO @ Sat, 27 Jun 2020 00:01:02: #2 predicted fragment length is 137 bps INFO @ Sat, 27 Jun 2020 00:01:02: #2 alternative fragment length(s) may be 3,137,150,162 bps INFO @ Sat, 27 Jun 2020 00:01:02: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX1995024/SRX1995024.20_model.r INFO @ Sat, 27 Jun 2020 00:01:02: #3 Call peaks... INFO @ Sat, 27 Jun 2020 00:01:02: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 27 Jun 2020 00:01:23: #3 Call peaks for each chromosome... INFO @ Sat, 27 Jun 2020 00:01:34: #3 Call peaks for each chromosome... INFO @ Sat, 27 Jun 2020 00:01:39: #3 Call peaks for each chromosome... INFO @ Sat, 27 Jun 2020 00:01:40: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX1995024/SRX1995024.05_peaks.xls INFO @ Sat, 27 Jun 2020 00:01:40: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX1995024/SRX1995024.05_peaks.narrowPeak INFO @ Sat, 27 Jun 2020 00:01:40: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX1995024/SRX1995024.05_summits.bed INFO @ Sat, 27 Jun 2020 00:01:40: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (475 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Sat, 27 Jun 2020 00:01:52: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX1995024/SRX1995024.10_peaks.xls INFO @ Sat, 27 Jun 2020 00:01:52: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX1995024/SRX1995024.10_peaks.narrowPeak INFO @ Sat, 27 Jun 2020 00:01:52: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX1995024/SRX1995024.10_summits.bed INFO @ Sat, 27 Jun 2020 00:01:52: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (338 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Sat, 27 Jun 2020 00:01:56: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX1995024/SRX1995024.20_peaks.xls INFO @ Sat, 27 Jun 2020 00:01:56: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX1995024/SRX1995024.20_peaks.narrowPeak INFO @ Sat, 27 Jun 2020 00:01:56: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX1995024/SRX1995024.20_summits.bed INFO @ Sat, 27 Jun 2020 00:01:56: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (218 records, 4 fields): 2 millis CompletedMACS2peakCalling