Job ID = 12234812
SRX = SRX2170085
Genome = ce11
Started at	210329_20:37:43

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...


fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 1944189795 Mar 29 20:24 SRR4250018.fastq.gz
Start BMap mapping with following parameters
 species                :C_elegans
 revision               :ce11
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX2170085.sum.gz
 output alignment file  :SRX2170085.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 1140 ms)
 -FM-Index for g2a genome.... finished (elapsed: 2229 ms)
 -suffix array for c2t genome.... finished (elapsed: 3338 ms)
 -suffix array for g2a genome.... finished (elapsed: 4442 ms)
 -reference sequence.... finished (elapsed: 4608 ms)
Index loading finished.
File(s) loaded: SRR4250018.fastq.gz.
Time elapsed:45453 ms
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku  328879 Mar 29 20:38 SRX2170085.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku 1220692 Mar 29 20:38 SRX2170085.sum.gz
SRX2170085.sum.gz was set to analysis list.
Analyzing SRX2170085.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku   4244 Mar 29 20:38 SRX2170085.mapsum.html
Processing "SRX2170085.bisulalign.gz" (328879 bytes)
***: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 802679695 Mar 29 20:38 SRX2170085.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku     23707 Mar 29 20:38 SRX2170085.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/C_elegans/ce11/C_elegans_ce11.binseq
GraphFile               :SRX2170085.graph
Output File (methyl)    :SRX2170085.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX2170085.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX2170085.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku  26630236 Mar 29 20:39 SRX2170085.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku     39873 Mar 29 20:39 SRX2170085.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku  26343560 Mar 29 20:39 SRX2170085.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku        0 Mar 29 20:39 SRX2170085.hmr
-rw-r--r-- 1 okishinya so-ddmku        0 Mar 29 20:39 SRX2170085.pmd
-rw-r--r-- 1 okishinya so-ddmku     5770 Mar 29 20:39 SRX2170085.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku  94790 Mar 29 20:39 SRX2170085.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  87467 Mar 29 20:39 SRX2170085.cpg.methyl.bw

=-=-=num_reads	326685
=-=-=mapping_rate_1	0.045
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.333
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	0
=-=-=partial_methyl_region	0
=-=-=high_methyl_region	260
=-=-=coverage	0.00145121
=-=-=end	210329_20:39:49
=-=-=duration	.035