Job ID = 5720200 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-04-15T12:51:43 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:01:54 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:02:28 fasterq-dump.2.9.6 sys: connection failed while opening file within cryptographic module - mbedtls_ssl_handshake returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:02:28 fasterq-dump.2.9.6 sys: connection failed while opening file within cryptographic module - ktls_handshake failed while accessing '165.112.9.238' from '172.19.7.194' 2020-04-15T13:02:28 fasterq-dump.2.9.6 sys: connection failed while opening file within cryptographic module - Failed to create TLS stream for 'sra-download.ncbi.nlm.nih.gov' (165.112.9.238) from '172.19.7.194' 2020-04-15T13:12:03 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 29,557,988 reads read : 59,115,976 reads written : 59,115,976 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:08:39 29557988 reads; of these: 29557988 (100.00%) were paired; of these: 9371583 (31.71%) aligned concordantly 0 times 15076882 (51.01%) aligned concordantly exactly 1 time 5109523 (17.29%) aligned concordantly >1 times ---- 9371583 pairs aligned concordantly 0 times; of these: 4116265 (43.92%) aligned discordantly 1 time ---- 5255318 pairs aligned 0 times concordantly or discordantly; of these: 10510636 mates make up the pairs; of these: 8355008 (79.49%) aligned 0 times 705989 (6.72%) aligned exactly 1 time 1449639 (13.79%) aligned >1 times 85.87% overall alignment rate Time searching: 01:08:40 Overall time: 01:08:40 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 3244684 / 23971919 = 0.1354 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 15 Apr 2020 23:53:20: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619569/SRX6619569.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619569/SRX6619569.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619569/SRX6619569.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619569/SRX6619569.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 15 Apr 2020 23:53:20: #1 read tag files... INFO @ Wed, 15 Apr 2020 23:53:20: #1 read treatment tags... INFO @ Wed, 15 Apr 2020 23:53:28: 1000000 INFO @ Wed, 15 Apr 2020 23:53:35: 2000000 INFO @ Wed, 15 Apr 2020 23:53:42: 3000000 INFO @ Wed, 15 Apr 2020 23:53:49: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 15 Apr 2020 23:53:50: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619569/SRX6619569.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619569/SRX6619569.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619569/SRX6619569.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619569/SRX6619569.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 15 Apr 2020 23:53:50: #1 read tag files... INFO @ Wed, 15 Apr 2020 23:53:50: #1 read treatment tags... INFO @ Wed, 15 Apr 2020 23:53:56: 5000000 INFO @ Wed, 15 Apr 2020 23:53:58: 1000000 INFO @ Wed, 15 Apr 2020 23:54:04: 6000000 INFO @ Wed, 15 Apr 2020 23:54:05: 2000000 INFO @ Wed, 15 Apr 2020 23:54:11: 7000000 INFO @ Wed, 15 Apr 2020 23:54:13: 3000000 INFO @ Wed, 15 Apr 2020 23:54:18: 8000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 15 Apr 2020 23:54:20: 4000000 INFO @ Wed, 15 Apr 2020 23:54:21: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619569/SRX6619569.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619569/SRX6619569.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619569/SRX6619569.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619569/SRX6619569.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 15 Apr 2020 23:54:21: #1 read tag files... INFO @ Wed, 15 Apr 2020 23:54:21: #1 read treatment tags... INFO @ Wed, 15 Apr 2020 23:54:26: 9000000 INFO @ Wed, 15 Apr 2020 23:54:28: 5000000 INFO @ Wed, 15 Apr 2020 23:54:29: 1000000 INFO @ Wed, 15 Apr 2020 23:54:35: 10000000 INFO @ Wed, 15 Apr 2020 23:54:36: 6000000 INFO @ Wed, 15 Apr 2020 23:54:37: 2000000 INFO @ Wed, 15 Apr 2020 23:54:43: 11000000 INFO @ Wed, 15 Apr 2020 23:54:43: 7000000 INFO @ Wed, 15 Apr 2020 23:54:45: 3000000 INFO @ Wed, 15 Apr 2020 23:54:51: 12000000 INFO @ Wed, 15 Apr 2020 23:54:51: 8000000 INFO @ Wed, 15 Apr 2020 23:54:53: 4000000 INFO @ Wed, 15 Apr 2020 23:54:59: 13000000 INFO @ Wed, 15 Apr 2020 23:54:59: 9000000 INFO @ Wed, 15 Apr 2020 23:55:01: 5000000 INFO @ Wed, 15 Apr 2020 23:55:07: 10000000 INFO @ Wed, 15 Apr 2020 23:55:07: 14000000 INFO @ Wed, 15 Apr 2020 23:55:09: 6000000 INFO @ Wed, 15 Apr 2020 23:55:14: 11000000 INFO @ Wed, 15 Apr 2020 23:55:14: 15000000 INFO @ Wed, 15 Apr 2020 23:55:16: 7000000 INFO @ Wed, 15 Apr 2020 23:55:22: 12000000 INFO @ Wed, 15 Apr 2020 23:55:22: 16000000 INFO @ Wed, 15 Apr 2020 23:55:24: 8000000 INFO @ Wed, 15 Apr 2020 23:55:29: 13000000 INFO @ Wed, 15 Apr 2020 23:55:30: 17000000 INFO @ Wed, 15 Apr 2020 23:55:32: 9000000 INFO @ Wed, 15 Apr 2020 23:55:37: 14000000 INFO @ Wed, 15 Apr 2020 23:55:37: 18000000 INFO @ Wed, 15 Apr 2020 23:55:39: 10000000 INFO @ Wed, 15 Apr 2020 23:55:44: 15000000 INFO @ Wed, 15 Apr 2020 23:55:45: 19000000 INFO @ Wed, 15 Apr 2020 23:55:47: 11000000 INFO @ Wed, 15 Apr 2020 23:55:52: 16000000 INFO @ Wed, 15 Apr 2020 23:55:53: 20000000 INFO @ Wed, 15 Apr 2020 23:55:55: 12000000 INFO @ Wed, 15 Apr 2020 23:56:00: 17000000 INFO @ Wed, 15 Apr 2020 23:56:01: 21000000 INFO @ Wed, 15 Apr 2020 23:56:03: 13000000 INFO @ Wed, 15 Apr 2020 23:56:07: 18000000 INFO @ Wed, 15 Apr 2020 23:56:09: 22000000 INFO @ Wed, 15 Apr 2020 23:56:11: 14000000 INFO @ Wed, 15 Apr 2020 23:56:15: 19000000 INFO @ Wed, 15 Apr 2020 23:56:17: 23000000 INFO @ Wed, 15 Apr 2020 23:56:18: 15000000 INFO @ Wed, 15 Apr 2020 23:56:23: 20000000 INFO @ Wed, 15 Apr 2020 23:56:24: 24000000 INFO @ Wed, 15 Apr 2020 23:56:26: 16000000 INFO @ Wed, 15 Apr 2020 23:56:30: 21000000 INFO @ Wed, 15 Apr 2020 23:56:32: 25000000 INFO @ Wed, 15 Apr 2020 23:56:33: 17000000 INFO @ Wed, 15 Apr 2020 23:56:38: 22000000 INFO @ Wed, 15 Apr 2020 23:56:40: 26000000 INFO @ Wed, 15 Apr 2020 23:56:41: 18000000 INFO @ Wed, 15 Apr 2020 23:56:45: 23000000 INFO @ Wed, 15 Apr 2020 23:56:47: 27000000 INFO @ Wed, 15 Apr 2020 23:56:49: 19000000 INFO @ Wed, 15 Apr 2020 23:56:52: 24000000 INFO @ Wed, 15 Apr 2020 23:56:55: 28000000 INFO @ Wed, 15 Apr 2020 23:56:56: 20000000 INFO @ Wed, 15 Apr 2020 23:57:00: 25000000 INFO @ Wed, 15 Apr 2020 23:57:02: 29000000 INFO @ Wed, 15 Apr 2020 23:57:04: 21000000 INFO @ Wed, 15 Apr 2020 23:57:08: 26000000 INFO @ Wed, 15 Apr 2020 23:57:10: 30000000 INFO @ Wed, 15 Apr 2020 23:57:11: 22000000 INFO @ Wed, 15 Apr 2020 23:57:15: 27000000 INFO @ Wed, 15 Apr 2020 23:57:17: 31000000 INFO @ Wed, 15 Apr 2020 23:57:18: 23000000 INFO @ Wed, 15 Apr 2020 23:57:23: 28000000 INFO @ Wed, 15 Apr 2020 23:57:25: 32000000 INFO @ Wed, 15 Apr 2020 23:57:26: 24000000 INFO @ Wed, 15 Apr 2020 23:57:30: 29000000 INFO @ Wed, 15 Apr 2020 23:57:32: 33000000 INFO @ Wed, 15 Apr 2020 23:57:33: 25000000 INFO @ Wed, 15 Apr 2020 23:57:38: 30000000 INFO @ Wed, 15 Apr 2020 23:57:40: 34000000 INFO @ Wed, 15 Apr 2020 23:57:41: 26000000 INFO @ Wed, 15 Apr 2020 23:57:45: 31000000 INFO @ Wed, 15 Apr 2020 23:57:47: 35000000 INFO @ Wed, 15 Apr 2020 23:57:48: 27000000 INFO @ Wed, 15 Apr 2020 23:57:52: 32000000 INFO @ Wed, 15 Apr 2020 23:57:54: 36000000 INFO @ Wed, 15 Apr 2020 23:57:56: 28000000 INFO @ Wed, 15 Apr 2020 23:58:00: 33000000 INFO @ Wed, 15 Apr 2020 23:58:02: 37000000 INFO @ Wed, 15 Apr 2020 23:58:03: 29000000 INFO @ Wed, 15 Apr 2020 23:58:07: 34000000 INFO @ Wed, 15 Apr 2020 23:58:09: 38000000 INFO @ Wed, 15 Apr 2020 23:58:11: 30000000 INFO @ Wed, 15 Apr 2020 23:58:14: 35000000 INFO @ Wed, 15 Apr 2020 23:58:17: 39000000 INFO @ Wed, 15 Apr 2020 23:58:18: 31000000 INFO @ Wed, 15 Apr 2020 23:58:22: 36000000 INFO @ Wed, 15 Apr 2020 23:58:24: 40000000 INFO @ Wed, 15 Apr 2020 23:58:26: 32000000 INFO @ Wed, 15 Apr 2020 23:58:29: 37000000 INFO @ Wed, 15 Apr 2020 23:58:32: 41000000 INFO @ Wed, 15 Apr 2020 23:58:33: 33000000 INFO @ Wed, 15 Apr 2020 23:58:37: 38000000 INFO @ Wed, 15 Apr 2020 23:58:39: 42000000 INFO @ Wed, 15 Apr 2020 23:58:40: 34000000 INFO @ Wed, 15 Apr 2020 23:58:44: 39000000 INFO @ Wed, 15 Apr 2020 23:58:47: 43000000 INFO @ Wed, 15 Apr 2020 23:58:48: 35000000 INFO @ Wed, 15 Apr 2020 23:58:52: 40000000 INFO @ Wed, 15 Apr 2020 23:58:55: 36000000 INFO @ Wed, 15 Apr 2020 23:58:55: 44000000 INFO @ Wed, 15 Apr 2020 23:58:57: #1 tag size is determined as 150 bps INFO @ Wed, 15 Apr 2020 23:58:57: #1 tag size = 150 INFO @ Wed, 15 Apr 2020 23:58:57: #1 total tags in treatment: 17313291 INFO @ Wed, 15 Apr 2020 23:58:57: #1 user defined the maximum tags... INFO @ Wed, 15 Apr 2020 23:58:57: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 15 Apr 2020 23:58:57: #1 tags after filtering in treatment: 13703447 INFO @ Wed, 15 Apr 2020 23:58:57: #1 Redundant rate of treatment: 0.21 INFO @ Wed, 15 Apr 2020 23:58:57: #1 finished! INFO @ Wed, 15 Apr 2020 23:58:57: #2 Build Peak Model... INFO @ Wed, 15 Apr 2020 23:58:57: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 15 Apr 2020 23:58:58: #2 number of paired peaks: 442 WARNING @ Wed, 15 Apr 2020 23:58:58: Fewer paired peaks (442) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 442 pairs to build model! INFO @ Wed, 15 Apr 2020 23:58:58: start model_add_line... INFO @ Wed, 15 Apr 2020 23:58:58: start X-correlation... INFO @ Wed, 15 Apr 2020 23:58:58: end of X-cor INFO @ Wed, 15 Apr 2020 23:58:58: #2 finished! INFO @ Wed, 15 Apr 2020 23:58:58: #2 predicted fragment length is 194 bps INFO @ Wed, 15 Apr 2020 23:58:58: #2 alternative fragment length(s) may be 4,194,202 bps INFO @ Wed, 15 Apr 2020 23:58:58: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619569/SRX6619569.05_model.r WARNING @ Wed, 15 Apr 2020 23:58:58: #2 Since the d (194) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 15 Apr 2020 23:58:58: #2 You may need to consider one of the other alternative d(s): 4,194,202 WARNING @ Wed, 15 Apr 2020 23:58:58: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 15 Apr 2020 23:58:58: #3 Call peaks... INFO @ Wed, 15 Apr 2020 23:58:58: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 15 Apr 2020 23:58:59: 41000000 INFO @ Wed, 15 Apr 2020 23:59:03: 37000000 INFO @ Wed, 15 Apr 2020 23:59:06: 42000000 INFO @ Wed, 15 Apr 2020 23:59:10: 38000000 INFO @ Wed, 15 Apr 2020 23:59:14: 43000000 INFO @ Wed, 15 Apr 2020 23:59:17: 39000000 INFO @ Wed, 15 Apr 2020 23:59:22: 44000000 INFO @ Wed, 15 Apr 2020 23:59:24: #1 tag size is determined as 150 bps INFO @ Wed, 15 Apr 2020 23:59:24: #1 tag size = 150 INFO @ Wed, 15 Apr 2020 23:59:24: #1 total tags in treatment: 17313291 INFO @ Wed, 15 Apr 2020 23:59:24: #1 user defined the maximum tags... INFO @ Wed, 15 Apr 2020 23:59:24: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 15 Apr 2020 23:59:24: #1 tags after filtering in treatment: 13703447 INFO @ Wed, 15 Apr 2020 23:59:24: #1 Redundant rate of treatment: 0.21 INFO @ Wed, 15 Apr 2020 23:59:24: #1 finished! INFO @ Wed, 15 Apr 2020 23:59:24: #2 Build Peak Model... INFO @ Wed, 15 Apr 2020 23:59:24: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 15 Apr 2020 23:59:25: 40000000 INFO @ Wed, 15 Apr 2020 23:59:25: #2 number of paired peaks: 442 WARNING @ Wed, 15 Apr 2020 23:59:25: Fewer paired peaks (442) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 442 pairs to build model! INFO @ Wed, 15 Apr 2020 23:59:25: start model_add_line... INFO @ Wed, 15 Apr 2020 23:59:25: start X-correlation... INFO @ Wed, 15 Apr 2020 23:59:25: end of X-cor INFO @ Wed, 15 Apr 2020 23:59:25: #2 finished! INFO @ Wed, 15 Apr 2020 23:59:25: #2 predicted fragment length is 194 bps INFO @ Wed, 15 Apr 2020 23:59:25: #2 alternative fragment length(s) may be 4,194,202 bps INFO @ Wed, 15 Apr 2020 23:59:25: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619569/SRX6619569.10_model.r WARNING @ Wed, 15 Apr 2020 23:59:25: #2 Since the d (194) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 15 Apr 2020 23:59:25: #2 You may need to consider one of the other alternative d(s): 4,194,202 WARNING @ Wed, 15 Apr 2020 23:59:25: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 15 Apr 2020 23:59:25: #3 Call peaks... INFO @ Wed, 15 Apr 2020 23:59:25: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 15 Apr 2020 23:59:28: #3 Call peaks for each chromosome... INFO @ Wed, 15 Apr 2020 23:59:32: 41000000 INFO @ Wed, 15 Apr 2020 23:59:39: 42000000 INFO @ Wed, 15 Apr 2020 23:59:42: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619569/SRX6619569.05_peaks.xls INFO @ Wed, 15 Apr 2020 23:59:42: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619569/SRX6619569.05_peaks.narrowPeak INFO @ Wed, 15 Apr 2020 23:59:42: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619569/SRX6619569.05_summits.bed INFO @ Wed, 15 Apr 2020 23:59:42: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (661 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Wed, 15 Apr 2020 23:59:47: 43000000 INFO @ Wed, 15 Apr 2020 23:59:54: #3 Call peaks for each chromosome... INFO @ Wed, 15 Apr 2020 23:59:54: 44000000 INFO @ Wed, 15 Apr 2020 23:59:56: #1 tag size is determined as 150 bps INFO @ Wed, 15 Apr 2020 23:59:56: #1 tag size = 150 INFO @ Wed, 15 Apr 2020 23:59:56: #1 total tags in treatment: 17313291 INFO @ Wed, 15 Apr 2020 23:59:56: #1 user defined the maximum tags... INFO @ Wed, 15 Apr 2020 23:59:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 15 Apr 2020 23:59:57: #1 tags after filtering in treatment: 13703447 INFO @ Wed, 15 Apr 2020 23:59:57: #1 Redundant rate of treatment: 0.21 INFO @ Wed, 15 Apr 2020 23:59:57: #1 finished! INFO @ Wed, 15 Apr 2020 23:59:57: #2 Build Peak Model... INFO @ Wed, 15 Apr 2020 23:59:57: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 15 Apr 2020 23:59:57: #2 number of paired peaks: 442 WARNING @ Wed, 15 Apr 2020 23:59:57: Fewer paired peaks (442) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 442 pairs to build model! INFO @ Wed, 15 Apr 2020 23:59:57: start model_add_line... INFO @ Wed, 15 Apr 2020 23:59:58: start X-correlation... INFO @ Wed, 15 Apr 2020 23:59:58: end of X-cor INFO @ Wed, 15 Apr 2020 23:59:58: #2 finished! INFO @ Wed, 15 Apr 2020 23:59:58: #2 predicted fragment length is 194 bps INFO @ Wed, 15 Apr 2020 23:59:58: #2 alternative fragment length(s) may be 4,194,202 bps INFO @ Wed, 15 Apr 2020 23:59:58: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619569/SRX6619569.20_model.r WARNING @ Wed, 15 Apr 2020 23:59:58: #2 Since the d (194) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 15 Apr 2020 23:59:58: #2 You may need to consider one of the other alternative d(s): 4,194,202 WARNING @ Wed, 15 Apr 2020 23:59:58: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 15 Apr 2020 23:59:58: #3 Call peaks... INFO @ Wed, 15 Apr 2020 23:59:58: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 00:00:06: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619569/SRX6619569.10_peaks.xls INFO @ Thu, 16 Apr 2020 00:00:06: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619569/SRX6619569.10_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 00:00:06: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619569/SRX6619569.10_summits.bed INFO @ Thu, 16 Apr 2020 00:00:06: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (444 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 00:00:26: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 00:00:38: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619569/SRX6619569.20_peaks.xls INFO @ Thu, 16 Apr 2020 00:00:38: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619569/SRX6619569.20_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 00:00:38: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619569/SRX6619569.20_summits.bed INFO @ Thu, 16 Apr 2020 00:00:38: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (284 records, 4 fields): 2 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。