Job ID = 5720189 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-04-15T12:50:53 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:52:06 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:54:35 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:58:06 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:02:46 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:23:10 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:25:04 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:28:02 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:28:03 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:28:59 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:33:14 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:41:10 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:48:10 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:49:24 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:54:09 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T14:01:40 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T14:06:15 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 64,952,264 reads read : 129,904,528 reads written : 129,904,528 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:33:34 64952264 reads; of these: 64952264 (100.00%) were paired; of these: 21760885 (33.50%) aligned concordantly 0 times 32968926 (50.76%) aligned concordantly exactly 1 time 10222453 (15.74%) aligned concordantly >1 times ---- 21760885 pairs aligned concordantly 0 times; of these: 12193769 (56.04%) aligned discordantly 1 time ---- 9567116 pairs aligned 0 times concordantly or discordantly; of these: 19134232 mates make up the pairs; of these: 10787588 (56.38%) aligned 0 times 2676615 (13.99%) aligned exactly 1 time 5670029 (29.63%) aligned >1 times 91.70% overall alignment rate Time searching: 02:33:34 Overall time: 02:33:34 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 88 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 11554638 / 55133063 = 0.2096 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 02:30:32: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619559/SRX6619559.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619559/SRX6619559.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619559/SRX6619559.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619559/SRX6619559.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 02:30:32: #1 read tag files... INFO @ Thu, 16 Apr 2020 02:30:32: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 02:30:40: 1000000 INFO @ Thu, 16 Apr 2020 02:30:48: 2000000 INFO @ Thu, 16 Apr 2020 02:30:55: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 02:31:02: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619559/SRX6619559.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619559/SRX6619559.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619559/SRX6619559.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619559/SRX6619559.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 02:31:02: #1 read tag files... INFO @ Thu, 16 Apr 2020 02:31:02: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 02:31:04: 4000000 INFO @ Thu, 16 Apr 2020 02:31:11: 1000000 INFO @ Thu, 16 Apr 2020 02:31:13: 5000000 INFO @ Thu, 16 Apr 2020 02:31:21: 2000000 INFO @ Thu, 16 Apr 2020 02:31:22: 6000000 INFO @ Thu, 16 Apr 2020 02:31:30: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 02:31:31: 7000000 INFO @ Thu, 16 Apr 2020 02:31:32: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619559/SRX6619559.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619559/SRX6619559.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619559/SRX6619559.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619559/SRX6619559.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 02:31:32: #1 read tag files... INFO @ Thu, 16 Apr 2020 02:31:32: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 02:31:39: 4000000 INFO @ Thu, 16 Apr 2020 02:31:40: 8000000 INFO @ Thu, 16 Apr 2020 02:31:41: 1000000 INFO @ Thu, 16 Apr 2020 02:31:49: 5000000 INFO @ Thu, 16 Apr 2020 02:31:49: 9000000 INFO @ Thu, 16 Apr 2020 02:31:51: 2000000 INFO @ Thu, 16 Apr 2020 02:31:58: 6000000 INFO @ Thu, 16 Apr 2020 02:31:59: 10000000 INFO @ Thu, 16 Apr 2020 02:32:00: 3000000 INFO @ Thu, 16 Apr 2020 02:32:08: 7000000 INFO @ Thu, 16 Apr 2020 02:32:08: 11000000 INFO @ Thu, 16 Apr 2020 02:32:09: 4000000 INFO @ Thu, 16 Apr 2020 02:32:17: 12000000 INFO @ Thu, 16 Apr 2020 02:32:17: 8000000 INFO @ Thu, 16 Apr 2020 02:32:18: 5000000 INFO @ Thu, 16 Apr 2020 02:32:26: 13000000 INFO @ Thu, 16 Apr 2020 02:32:27: 9000000 INFO @ Thu, 16 Apr 2020 02:32:28: 6000000 INFO @ Thu, 16 Apr 2020 02:32:35: 14000000 INFO @ Thu, 16 Apr 2020 02:32:36: 10000000 INFO @ Thu, 16 Apr 2020 02:32:37: 7000000 INFO @ Thu, 16 Apr 2020 02:32:45: 15000000 INFO @ Thu, 16 Apr 2020 02:32:46: 11000000 INFO @ Thu, 16 Apr 2020 02:32:46: 8000000 INFO @ Thu, 16 Apr 2020 02:32:54: 16000000 INFO @ Thu, 16 Apr 2020 02:32:55: 12000000 INFO @ Thu, 16 Apr 2020 02:32:56: 9000000 INFO @ Thu, 16 Apr 2020 02:33:03: 17000000 INFO @ Thu, 16 Apr 2020 02:33:04: 13000000 INFO @ Thu, 16 Apr 2020 02:33:05: 10000000 INFO @ Thu, 16 Apr 2020 02:33:12: 18000000 INFO @ Thu, 16 Apr 2020 02:33:14: 14000000 INFO @ Thu, 16 Apr 2020 02:33:14: 11000000 INFO @ Thu, 16 Apr 2020 02:33:21: 19000000 INFO @ Thu, 16 Apr 2020 02:33:23: 15000000 INFO @ Thu, 16 Apr 2020 02:33:23: 12000000 INFO @ Thu, 16 Apr 2020 02:33:31: 20000000 INFO @ Thu, 16 Apr 2020 02:33:32: 13000000 INFO @ Thu, 16 Apr 2020 02:33:32: 16000000 INFO @ Thu, 16 Apr 2020 02:33:40: 21000000 INFO @ Thu, 16 Apr 2020 02:33:41: 14000000 INFO @ Thu, 16 Apr 2020 02:33:42: 17000000 INFO @ Thu, 16 Apr 2020 02:33:49: 22000000 INFO @ Thu, 16 Apr 2020 02:33:51: 15000000 INFO @ Thu, 16 Apr 2020 02:33:51: 18000000 INFO @ Thu, 16 Apr 2020 02:33:59: 23000000 INFO @ Thu, 16 Apr 2020 02:34:00: 16000000 INFO @ Thu, 16 Apr 2020 02:34:01: 19000000 INFO @ Thu, 16 Apr 2020 02:34:08: 24000000 INFO @ Thu, 16 Apr 2020 02:34:09: 17000000 INFO @ Thu, 16 Apr 2020 02:34:11: 20000000 INFO @ Thu, 16 Apr 2020 02:34:17: 25000000 INFO @ Thu, 16 Apr 2020 02:34:19: 18000000 INFO @ Thu, 16 Apr 2020 02:34:20: 21000000 INFO @ Thu, 16 Apr 2020 02:34:27: 26000000 INFO @ Thu, 16 Apr 2020 02:34:28: 19000000 INFO @ Thu, 16 Apr 2020 02:34:30: 22000000 INFO @ Thu, 16 Apr 2020 02:34:36: 27000000 INFO @ Thu, 16 Apr 2020 02:34:38: 20000000 INFO @ Thu, 16 Apr 2020 02:34:39: 23000000 INFO @ Thu, 16 Apr 2020 02:34:46: 28000000 INFO @ Thu, 16 Apr 2020 02:34:47: 21000000 INFO @ Thu, 16 Apr 2020 02:34:49: 24000000 INFO @ Thu, 16 Apr 2020 02:34:56: 29000000 INFO @ Thu, 16 Apr 2020 02:34:56: 22000000 INFO @ Thu, 16 Apr 2020 02:34:58: 25000000 INFO @ Thu, 16 Apr 2020 02:35:05: 30000000 INFO @ Thu, 16 Apr 2020 02:35:06: 23000000 INFO @ Thu, 16 Apr 2020 02:35:08: 26000000 INFO @ Thu, 16 Apr 2020 02:35:14: 31000000 INFO @ Thu, 16 Apr 2020 02:35:15: 24000000 INFO @ Thu, 16 Apr 2020 02:35:17: 27000000 INFO @ Thu, 16 Apr 2020 02:35:24: 32000000 INFO @ Thu, 16 Apr 2020 02:35:24: 25000000 INFO @ Thu, 16 Apr 2020 02:35:27: 28000000 INFO @ Thu, 16 Apr 2020 02:35:33: 33000000 INFO @ Thu, 16 Apr 2020 02:35:33: 26000000 INFO @ Thu, 16 Apr 2020 02:35:36: 29000000 INFO @ Thu, 16 Apr 2020 02:35:42: 34000000 INFO @ Thu, 16 Apr 2020 02:35:43: 27000000 INFO @ Thu, 16 Apr 2020 02:35:46: 30000000 INFO @ Thu, 16 Apr 2020 02:35:51: 35000000 INFO @ Thu, 16 Apr 2020 02:35:52: 28000000 INFO @ Thu, 16 Apr 2020 02:35:56: 31000000 INFO @ Thu, 16 Apr 2020 02:36:01: 36000000 INFO @ Thu, 16 Apr 2020 02:36:02: 29000000 INFO @ Thu, 16 Apr 2020 02:36:05: 32000000 INFO @ Thu, 16 Apr 2020 02:36:10: 37000000 INFO @ Thu, 16 Apr 2020 02:36:12: 30000000 INFO @ Thu, 16 Apr 2020 02:36:14: 33000000 INFO @ Thu, 16 Apr 2020 02:36:19: 38000000 INFO @ Thu, 16 Apr 2020 02:36:21: 31000000 INFO @ Thu, 16 Apr 2020 02:36:24: 34000000 INFO @ Thu, 16 Apr 2020 02:36:29: 39000000 INFO @ Thu, 16 Apr 2020 02:36:30: 32000000 INFO @ Thu, 16 Apr 2020 02:36:33: 35000000 INFO @ Thu, 16 Apr 2020 02:36:38: 40000000 INFO @ Thu, 16 Apr 2020 02:36:40: 33000000 INFO @ Thu, 16 Apr 2020 02:36:42: 36000000 INFO @ Thu, 16 Apr 2020 02:36:47: 41000000 INFO @ Thu, 16 Apr 2020 02:36:49: 34000000 INFO @ Thu, 16 Apr 2020 02:36:51: 37000000 INFO @ Thu, 16 Apr 2020 02:36:57: 42000000 INFO @ Thu, 16 Apr 2020 02:36:58: 35000000 INFO @ Thu, 16 Apr 2020 02:37:00: 38000000 INFO @ Thu, 16 Apr 2020 02:37:06: 43000000 INFO @ Thu, 16 Apr 2020 02:37:07: 36000000 INFO @ Thu, 16 Apr 2020 02:37:10: 39000000 INFO @ Thu, 16 Apr 2020 02:37:15: 44000000 INFO @ Thu, 16 Apr 2020 02:37:16: 37000000 INFO @ Thu, 16 Apr 2020 02:37:19: 40000000 INFO @ Thu, 16 Apr 2020 02:37:24: 45000000 INFO @ Thu, 16 Apr 2020 02:37:25: 38000000 INFO @ Thu, 16 Apr 2020 02:37:29: 41000000 INFO @ Thu, 16 Apr 2020 02:37:33: 46000000 INFO @ Thu, 16 Apr 2020 02:37:34: 39000000 INFO @ Thu, 16 Apr 2020 02:37:38: 42000000 INFO @ Thu, 16 Apr 2020 02:37:42: 47000000 INFO @ Thu, 16 Apr 2020 02:37:44: 40000000 INFO @ Thu, 16 Apr 2020 02:37:47: 43000000 INFO @ Thu, 16 Apr 2020 02:37:51: 48000000 INFO @ Thu, 16 Apr 2020 02:37:53: 41000000 INFO @ Thu, 16 Apr 2020 02:37:56: 44000000 INFO @ Thu, 16 Apr 2020 02:38:00: 49000000 INFO @ Thu, 16 Apr 2020 02:38:02: 42000000 INFO @ Thu, 16 Apr 2020 02:38:05: 45000000 INFO @ Thu, 16 Apr 2020 02:38:09: 50000000 INFO @ Thu, 16 Apr 2020 02:38:12: 43000000 INFO @ Thu, 16 Apr 2020 02:38:14: 46000000 INFO @ Thu, 16 Apr 2020 02:38:19: 51000000 INFO @ Thu, 16 Apr 2020 02:38:21: 44000000 INFO @ Thu, 16 Apr 2020 02:38:23: 47000000 INFO @ Thu, 16 Apr 2020 02:38:28: 52000000 INFO @ Thu, 16 Apr 2020 02:38:30: 45000000 INFO @ Thu, 16 Apr 2020 02:38:32: 48000000 INFO @ Thu, 16 Apr 2020 02:38:37: 53000000 INFO @ Thu, 16 Apr 2020 02:38:39: 46000000 INFO @ Thu, 16 Apr 2020 02:38:41: 49000000 INFO @ Thu, 16 Apr 2020 02:38:46: 54000000 INFO @ Thu, 16 Apr 2020 02:38:48: 47000000 INFO @ Thu, 16 Apr 2020 02:38:50: 50000000 INFO @ Thu, 16 Apr 2020 02:38:56: 55000000 INFO @ Thu, 16 Apr 2020 02:38:57: 48000000 INFO @ Thu, 16 Apr 2020 02:38:59: 51000000 INFO @ Thu, 16 Apr 2020 02:39:05: 56000000 INFO @ Thu, 16 Apr 2020 02:39:06: 49000000 INFO @ Thu, 16 Apr 2020 02:39:09: 52000000 INFO @ Thu, 16 Apr 2020 02:39:14: 57000000 INFO @ Thu, 16 Apr 2020 02:39:15: 50000000 INFO @ Thu, 16 Apr 2020 02:39:18: 53000000 INFO @ Thu, 16 Apr 2020 02:39:23: 58000000 INFO @ Thu, 16 Apr 2020 02:39:25: 51000000 INFO @ Thu, 16 Apr 2020 02:39:27: 54000000 INFO @ Thu, 16 Apr 2020 02:39:32: 59000000 INFO @ Thu, 16 Apr 2020 02:39:34: 52000000 INFO @ Thu, 16 Apr 2020 02:39:36: 55000000 INFO @ Thu, 16 Apr 2020 02:39:41: 60000000 INFO @ Thu, 16 Apr 2020 02:39:43: 53000000 INFO @ Thu, 16 Apr 2020 02:39:45: 56000000 INFO @ Thu, 16 Apr 2020 02:39:50: 61000000 INFO @ Thu, 16 Apr 2020 02:39:53: 54000000 INFO @ Thu, 16 Apr 2020 02:39:54: 57000000 INFO @ Thu, 16 Apr 2020 02:39:59: 62000000 INFO @ Thu, 16 Apr 2020 02:40:02: 55000000 INFO @ Thu, 16 Apr 2020 02:40:03: 58000000 INFO @ Thu, 16 Apr 2020 02:40:08: 63000000 INFO @ Thu, 16 Apr 2020 02:40:11: 56000000 INFO @ Thu, 16 Apr 2020 02:40:12: 59000000 INFO @ Thu, 16 Apr 2020 02:40:17: 64000000 INFO @ Thu, 16 Apr 2020 02:40:20: 57000000 INFO @ Thu, 16 Apr 2020 02:40:20: 60000000 INFO @ Thu, 16 Apr 2020 02:40:27: 65000000 INFO @ Thu, 16 Apr 2020 02:40:29: 58000000 INFO @ Thu, 16 Apr 2020 02:40:29: 61000000 INFO @ Thu, 16 Apr 2020 02:40:36: 66000000 INFO @ Thu, 16 Apr 2020 02:40:38: 59000000 INFO @ Thu, 16 Apr 2020 02:40:38: 62000000 INFO @ Thu, 16 Apr 2020 02:40:45: 67000000 INFO @ Thu, 16 Apr 2020 02:40:47: 60000000 INFO @ Thu, 16 Apr 2020 02:40:47: 63000000 INFO @ Thu, 16 Apr 2020 02:40:54: 68000000 INFO @ Thu, 16 Apr 2020 02:40:56: 61000000 INFO @ Thu, 16 Apr 2020 02:40:57: 64000000 INFO @ Thu, 16 Apr 2020 02:41:03: 69000000 INFO @ Thu, 16 Apr 2020 02:41:05: 62000000 INFO @ Thu, 16 Apr 2020 02:41:06: 65000000 INFO @ Thu, 16 Apr 2020 02:41:12: 70000000 INFO @ Thu, 16 Apr 2020 02:41:14: 63000000 INFO @ Thu, 16 Apr 2020 02:41:15: 66000000 INFO @ Thu, 16 Apr 2020 02:41:21: 71000000 INFO @ Thu, 16 Apr 2020 02:41:24: 64000000 INFO @ Thu, 16 Apr 2020 02:41:24: 67000000 INFO @ Thu, 16 Apr 2020 02:41:30: 72000000 INFO @ Thu, 16 Apr 2020 02:41:33: 65000000 INFO @ Thu, 16 Apr 2020 02:41:33: 68000000 INFO @ Thu, 16 Apr 2020 02:41:39: 73000000 INFO @ Thu, 16 Apr 2020 02:41:42: 69000000 INFO @ Thu, 16 Apr 2020 02:41:42: 66000000 INFO @ Thu, 16 Apr 2020 02:41:48: 74000000 INFO @ Thu, 16 Apr 2020 02:41:51: 70000000 INFO @ Thu, 16 Apr 2020 02:41:51: 67000000 INFO @ Thu, 16 Apr 2020 02:41:57: 75000000 INFO @ Thu, 16 Apr 2020 02:41:59: 71000000 INFO @ Thu, 16 Apr 2020 02:42:00: 68000000 INFO @ Thu, 16 Apr 2020 02:42:06: 76000000 INFO @ Thu, 16 Apr 2020 02:42:08: 72000000 INFO @ Thu, 16 Apr 2020 02:42:09: 69000000 INFO @ Thu, 16 Apr 2020 02:42:15: 77000000 INFO @ Thu, 16 Apr 2020 02:42:17: 73000000 INFO @ Thu, 16 Apr 2020 02:42:18: 70000000 INFO @ Thu, 16 Apr 2020 02:42:24: 78000000 INFO @ Thu, 16 Apr 2020 02:42:26: 74000000 INFO @ Thu, 16 Apr 2020 02:42:26: 71000000 INFO @ Thu, 16 Apr 2020 02:42:33: 79000000 INFO @ Thu, 16 Apr 2020 02:42:35: 75000000 INFO @ Thu, 16 Apr 2020 02:42:35: 72000000 INFO @ Thu, 16 Apr 2020 02:42:42: 80000000 INFO @ Thu, 16 Apr 2020 02:42:44: 76000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Thu, 16 Apr 2020 02:42:44: 73000000 INFO @ Thu, 16 Apr 2020 02:42:51: 81000000 INFO @ Thu, 16 Apr 2020 02:42:52: 77000000 INFO @ Thu, 16 Apr 2020 02:42:53: 74000000 INFO @ Thu, 16 Apr 2020 02:43:00: 82000000 INFO @ Thu, 16 Apr 2020 02:43:01: 78000000 INFO @ Thu, 16 Apr 2020 02:43:02: 75000000 INFO @ Thu, 16 Apr 2020 02:43:09: 83000000 INFO @ Thu, 16 Apr 2020 02:43:10: 79000000 INFO @ Thu, 16 Apr 2020 02:43:11: 76000000 INFO @ Thu, 16 Apr 2020 02:43:18: 84000000 INFO @ Thu, 16 Apr 2020 02:43:19: 80000000 INFO @ Thu, 16 Apr 2020 02:43:20: 77000000 INFO @ Thu, 16 Apr 2020 02:43:27: 85000000 INFO @ Thu, 16 Apr 2020 02:43:28: 81000000 INFO @ Thu, 16 Apr 2020 02:43:29: 78000000 INFO @ Thu, 16 Apr 2020 02:43:37: 86000000 INFO @ Thu, 16 Apr 2020 02:43:39: 82000000 INFO @ Thu, 16 Apr 2020 02:43:41: 79000000 INFO @ Thu, 16 Apr 2020 02:43:49: 87000000 INFO @ Thu, 16 Apr 2020 02:43:51: 83000000 INFO @ Thu, 16 Apr 2020 02:43:51: 80000000 INFO @ Thu, 16 Apr 2020 02:44:02: 84000000 INFO @ Thu, 16 Apr 2020 02:44:02: 81000000 INFO @ Thu, 16 Apr 2020 02:44:03: 88000000 BigWig に変換しました。 INFO @ Thu, 16 Apr 2020 02:44:14: 85000000 INFO @ Thu, 16 Apr 2020 02:44:15: 82000000 INFO @ Thu, 16 Apr 2020 02:44:15: 89000000 INFO @ Thu, 16 Apr 2020 02:44:25: 86000000 INFO @ Thu, 16 Apr 2020 02:44:27: 90000000 INFO @ Thu, 16 Apr 2020 02:44:29: 83000000 INFO @ Thu, 16 Apr 2020 02:44:38: 87000000 INFO @ Thu, 16 Apr 2020 02:44:40: 91000000 INFO @ Thu, 16 Apr 2020 02:44:42: 84000000 INFO @ Thu, 16 Apr 2020 02:44:50: 88000000 INFO @ Thu, 16 Apr 2020 02:44:51: 92000000 INFO @ Thu, 16 Apr 2020 02:44:53: 85000000 INFO @ Thu, 16 Apr 2020 02:45:02: 89000000 INFO @ Thu, 16 Apr 2020 02:45:02: 93000000 INFO @ Thu, 16 Apr 2020 02:45:04: 86000000 INFO @ Thu, 16 Apr 2020 02:45:13: 90000000 INFO @ Thu, 16 Apr 2020 02:45:14: 94000000 INFO @ Thu, 16 Apr 2020 02:45:16: 87000000 INFO @ Thu, 16 Apr 2020 02:45:25: 91000000 INFO @ Thu, 16 Apr 2020 02:45:27: 95000000 INFO @ Thu, 16 Apr 2020 02:45:28: 88000000 INFO @ Thu, 16 Apr 2020 02:45:37: 92000000 INFO @ Thu, 16 Apr 2020 02:45:40: 96000000 INFO @ Thu, 16 Apr 2020 02:45:40: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 02:45:40: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 02:45:40: #1 total tags in treatment: 34179120 INFO @ Thu, 16 Apr 2020 02:45:40: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 02:45:40: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 02:45:41: #1 tags after filtering in treatment: 24755799 INFO @ Thu, 16 Apr 2020 02:45:41: #1 Redundant rate of treatment: 0.28 INFO @ Thu, 16 Apr 2020 02:45:41: #1 finished! INFO @ Thu, 16 Apr 2020 02:45:41: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 02:45:41: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 02:45:44: #2 number of paired peaks: 1004 INFO @ Thu, 16 Apr 2020 02:45:44: start model_add_line... INFO @ Thu, 16 Apr 2020 02:45:44: start X-correlation... INFO @ Thu, 16 Apr 2020 02:45:44: end of X-cor INFO @ Thu, 16 Apr 2020 02:45:44: #2 finished! INFO @ Thu, 16 Apr 2020 02:45:44: #2 predicted fragment length is 207 bps INFO @ Thu, 16 Apr 2020 02:45:44: #2 alternative fragment length(s) may be 3,207,232 bps INFO @ Thu, 16 Apr 2020 02:45:44: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619559/SRX6619559.05_model.r WARNING @ Thu, 16 Apr 2020 02:45:44: #2 Since the d (207) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 02:45:44: #2 You may need to consider one of the other alternative d(s): 3,207,232 WARNING @ Thu, 16 Apr 2020 02:45:44: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 02:45:44: #3 Call peaks... INFO @ Thu, 16 Apr 2020 02:45:44: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 02:45:45: 89000000 INFO @ Thu, 16 Apr 2020 02:45:49: 93000000 INFO @ Thu, 16 Apr 2020 02:46:02: 90000000 INFO @ Thu, 16 Apr 2020 02:46:02: 94000000 INFO @ Thu, 16 Apr 2020 02:46:17: 95000000 INFO @ Thu, 16 Apr 2020 02:46:18: 91000000 INFO @ Thu, 16 Apr 2020 02:46:30: 96000000 INFO @ Thu, 16 Apr 2020 02:46:31: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 02:46:31: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 02:46:31: #1 total tags in treatment: 34179120 INFO @ Thu, 16 Apr 2020 02:46:31: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 02:46:31: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 02:46:32: #1 tags after filtering in treatment: 24755799 INFO @ Thu, 16 Apr 2020 02:46:32: #1 Redundant rate of treatment: 0.28 INFO @ Thu, 16 Apr 2020 02:46:32: #1 finished! INFO @ Thu, 16 Apr 2020 02:46:32: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 02:46:32: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 02:46:33: 92000000 INFO @ Thu, 16 Apr 2020 02:46:34: #2 number of paired peaks: 1004 INFO @ Thu, 16 Apr 2020 02:46:34: start model_add_line... INFO @ Thu, 16 Apr 2020 02:46:34: start X-correlation... INFO @ Thu, 16 Apr 2020 02:46:34: end of X-cor INFO @ Thu, 16 Apr 2020 02:46:34: #2 finished! INFO @ Thu, 16 Apr 2020 02:46:34: #2 predicted fragment length is 207 bps INFO @ Thu, 16 Apr 2020 02:46:34: #2 alternative fragment length(s) may be 3,207,232 bps INFO @ Thu, 16 Apr 2020 02:46:34: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619559/SRX6619559.10_model.r WARNING @ Thu, 16 Apr 2020 02:46:34: #2 Since the d (207) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 02:46:34: #2 You may need to consider one of the other alternative d(s): 3,207,232 WARNING @ Thu, 16 Apr 2020 02:46:34: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 02:46:34: #3 Call peaks... INFO @ Thu, 16 Apr 2020 02:46:34: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 02:46:44: 93000000 INFO @ Thu, 16 Apr 2020 02:46:55: 94000000 INFO @ Thu, 16 Apr 2020 02:47:07: 95000000 INFO @ Thu, 16 Apr 2020 02:47:08: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 02:47:17: 96000000 INFO @ Thu, 16 Apr 2020 02:47:18: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 02:47:18: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 02:47:18: #1 total tags in treatment: 34179120 INFO @ Thu, 16 Apr 2020 02:47:18: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 02:47:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 02:47:19: #1 tags after filtering in treatment: 24755799 INFO @ Thu, 16 Apr 2020 02:47:19: #1 Redundant rate of treatment: 0.28 INFO @ Thu, 16 Apr 2020 02:47:19: #1 finished! INFO @ Thu, 16 Apr 2020 02:47:19: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 02:47:19: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 02:47:21: #2 number of paired peaks: 1004 INFO @ Thu, 16 Apr 2020 02:47:21: start model_add_line... INFO @ Thu, 16 Apr 2020 02:47:21: start X-correlation... INFO @ Thu, 16 Apr 2020 02:47:21: end of X-cor INFO @ Thu, 16 Apr 2020 02:47:21: #2 finished! INFO @ Thu, 16 Apr 2020 02:47:21: #2 predicted fragment length is 207 bps INFO @ Thu, 16 Apr 2020 02:47:21: #2 alternative fragment length(s) may be 3,207,232 bps INFO @ Thu, 16 Apr 2020 02:47:21: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619559/SRX6619559.20_model.r WARNING @ Thu, 16 Apr 2020 02:47:21: #2 Since the d (207) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 02:47:21: #2 You may need to consider one of the other alternative d(s): 3,207,232 WARNING @ Thu, 16 Apr 2020 02:47:21: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 02:47:21: #3 Call peaks... INFO @ Thu, 16 Apr 2020 02:47:21: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 02:47:43: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619559/SRX6619559.05_peaks.xls INFO @ Thu, 16 Apr 2020 02:47:43: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619559/SRX6619559.05_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 02:47:43: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619559/SRX6619559.05_summits.bed INFO @ Thu, 16 Apr 2020 02:47:43: Done! pass1 - making usageList (6 chroms): 29 millis pass2 - checking and writing primary data (16306 records, 4 fields): 48 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 02:47:50: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 02:48:19: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619559/SRX6619559.10_peaks.xls INFO @ Thu, 16 Apr 2020 02:48:19: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619559/SRX6619559.10_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 02:48:19: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619559/SRX6619559.10_summits.bed INFO @ Thu, 16 Apr 2020 02:48:20: Done! pass1 - making usageList (6 chroms): 30 millis pass2 - checking and writing primary data (9035 records, 4 fields): 30 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 02:48:34: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 02:48:57: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619559/SRX6619559.20_peaks.xls INFO @ Thu, 16 Apr 2020 02:48:57: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619559/SRX6619559.20_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 02:48:57: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619559/SRX6619559.20_summits.bed INFO @ Thu, 16 Apr 2020 02:48:57: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (3573 records, 4 fields): 5 millis CompletedMACS2peakCalling