Job ID = 5720188 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-04-15T12:54:16 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:54:27 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:57:53 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:02:28 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:09:27 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:12:00 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:28:54 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:49:16 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:54:09 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 62,434,089 reads read : 124,868,178 reads written : 124,868,178 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:26:08 62434089 reads; of these: 62434089 (100.00%) were paired; of these: 19709864 (31.57%) aligned concordantly 0 times 32268970 (51.68%) aligned concordantly exactly 1 time 10455255 (16.75%) aligned concordantly >1 times ---- 19709864 pairs aligned concordantly 0 times; of these: 11508991 (58.39%) aligned discordantly 1 time ---- 8200873 pairs aligned 0 times concordantly or discordantly; of these: 16401746 mates make up the pairs; of these: 6466119 (39.42%) aligned 0 times 3346569 (20.40%) aligned exactly 1 time 6589058 (40.17%) aligned >1 times 94.82% overall alignment rate Time searching: 02:26:09 Overall time: 02:26:09 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 88 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 9870040 / 54054252 = 0.1826 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 02:23:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619558/SRX6619558.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619558/SRX6619558.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619558/SRX6619558.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619558/SRX6619558.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 02:23:31: #1 read tag files... INFO @ Thu, 16 Apr 2020 02:23:31: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 02:23:38: 1000000 INFO @ Thu, 16 Apr 2020 02:23:45: 2000000 INFO @ Thu, 16 Apr 2020 02:23:52: 3000000 INFO @ Thu, 16 Apr 2020 02:23:59: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 02:24:01: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619558/SRX6619558.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619558/SRX6619558.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619558/SRX6619558.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619558/SRX6619558.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 02:24:01: #1 read tag files... INFO @ Thu, 16 Apr 2020 02:24:01: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 02:24:06: 5000000 INFO @ Thu, 16 Apr 2020 02:24:09: 1000000 INFO @ Thu, 16 Apr 2020 02:24:14: 6000000 INFO @ Thu, 16 Apr 2020 02:24:17: 2000000 INFO @ Thu, 16 Apr 2020 02:24:21: 7000000 INFO @ Thu, 16 Apr 2020 02:24:24: 3000000 INFO @ Thu, 16 Apr 2020 02:24:28: 8000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 02:24:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619558/SRX6619558.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619558/SRX6619558.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619558/SRX6619558.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619558/SRX6619558.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 02:24:31: #1 read tag files... INFO @ Thu, 16 Apr 2020 02:24:31: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 02:24:32: 4000000 INFO @ Thu, 16 Apr 2020 02:24:37: 9000000 INFO @ Thu, 16 Apr 2020 02:24:40: 1000000 INFO @ Thu, 16 Apr 2020 02:24:40: 5000000 INFO @ Thu, 16 Apr 2020 02:24:45: 10000000 INFO @ Thu, 16 Apr 2020 02:24:48: 2000000 INFO @ Thu, 16 Apr 2020 02:24:48: 6000000 INFO @ Thu, 16 Apr 2020 02:24:53: 11000000 INFO @ Thu, 16 Apr 2020 02:24:56: 3000000 INFO @ Thu, 16 Apr 2020 02:24:56: 7000000 INFO @ Thu, 16 Apr 2020 02:25:01: 12000000 INFO @ Thu, 16 Apr 2020 02:25:04: 4000000 INFO @ Thu, 16 Apr 2020 02:25:04: 8000000 INFO @ Thu, 16 Apr 2020 02:25:09: 13000000 INFO @ Thu, 16 Apr 2020 02:25:12: 5000000 INFO @ Thu, 16 Apr 2020 02:25:12: 9000000 INFO @ Thu, 16 Apr 2020 02:25:17: 14000000 INFO @ Thu, 16 Apr 2020 02:25:20: 6000000 INFO @ Thu, 16 Apr 2020 02:25:20: 10000000 INFO @ Thu, 16 Apr 2020 02:25:25: 15000000 INFO @ Thu, 16 Apr 2020 02:25:27: 7000000 INFO @ Thu, 16 Apr 2020 02:25:28: 11000000 INFO @ Thu, 16 Apr 2020 02:25:33: 16000000 INFO @ Thu, 16 Apr 2020 02:25:35: 8000000 INFO @ Thu, 16 Apr 2020 02:25:36: 12000000 INFO @ Thu, 16 Apr 2020 02:25:40: 17000000 INFO @ Thu, 16 Apr 2020 02:25:43: 9000000 INFO @ Thu, 16 Apr 2020 02:25:44: 13000000 INFO @ Thu, 16 Apr 2020 02:25:48: 18000000 INFO @ Thu, 16 Apr 2020 02:25:51: 10000000 INFO @ Thu, 16 Apr 2020 02:25:52: 14000000 INFO @ Thu, 16 Apr 2020 02:25:55: 19000000 INFO @ Thu, 16 Apr 2020 02:25:59: 11000000 INFO @ Thu, 16 Apr 2020 02:26:00: 15000000 INFO @ Thu, 16 Apr 2020 02:26:02: 20000000 INFO @ Thu, 16 Apr 2020 02:26:07: 12000000 INFO @ Thu, 16 Apr 2020 02:26:07: 16000000 INFO @ Thu, 16 Apr 2020 02:26:10: 21000000 INFO @ Thu, 16 Apr 2020 02:26:14: 13000000 INFO @ Thu, 16 Apr 2020 02:26:15: 17000000 INFO @ Thu, 16 Apr 2020 02:26:18: 22000000 INFO @ Thu, 16 Apr 2020 02:26:22: 14000000 INFO @ Thu, 16 Apr 2020 02:26:22: 18000000 INFO @ Thu, 16 Apr 2020 02:26:26: 23000000 INFO @ Thu, 16 Apr 2020 02:26:30: 19000000 INFO @ Thu, 16 Apr 2020 02:26:30: 15000000 INFO @ Thu, 16 Apr 2020 02:26:33: 24000000 INFO @ Thu, 16 Apr 2020 02:26:37: 20000000 INFO @ Thu, 16 Apr 2020 02:26:37: 16000000 INFO @ Thu, 16 Apr 2020 02:26:41: 25000000 INFO @ Thu, 16 Apr 2020 02:26:45: 21000000 INFO @ Thu, 16 Apr 2020 02:26:45: 17000000 INFO @ Thu, 16 Apr 2020 02:26:49: 26000000 INFO @ Thu, 16 Apr 2020 02:26:52: 22000000 INFO @ Thu, 16 Apr 2020 02:26:52: 18000000 INFO @ Thu, 16 Apr 2020 02:26:57: 27000000 INFO @ Thu, 16 Apr 2020 02:27:00: 19000000 INFO @ Thu, 16 Apr 2020 02:27:00: 23000000 INFO @ Thu, 16 Apr 2020 02:27:04: 28000000 INFO @ Thu, 16 Apr 2020 02:27:07: 20000000 INFO @ Thu, 16 Apr 2020 02:27:08: 24000000 INFO @ Thu, 16 Apr 2020 02:27:12: 29000000 INFO @ Thu, 16 Apr 2020 02:27:14: 21000000 INFO @ Thu, 16 Apr 2020 02:27:15: 25000000 INFO @ Thu, 16 Apr 2020 02:27:19: 30000000 INFO @ Thu, 16 Apr 2020 02:27:22: 22000000 INFO @ Thu, 16 Apr 2020 02:27:23: 26000000 INFO @ Thu, 16 Apr 2020 02:27:27: 31000000 INFO @ Thu, 16 Apr 2020 02:27:30: 23000000 INFO @ Thu, 16 Apr 2020 02:27:31: 27000000 INFO @ Thu, 16 Apr 2020 02:27:35: 32000000 INFO @ Thu, 16 Apr 2020 02:27:37: 24000000 INFO @ Thu, 16 Apr 2020 02:27:39: 28000000 INFO @ Thu, 16 Apr 2020 02:27:42: 33000000 INFO @ Thu, 16 Apr 2020 02:27:45: 25000000 INFO @ Thu, 16 Apr 2020 02:27:46: 29000000 INFO @ Thu, 16 Apr 2020 02:27:50: 34000000 INFO @ Thu, 16 Apr 2020 02:27:53: 26000000 INFO @ Thu, 16 Apr 2020 02:27:54: 30000000 INFO @ Thu, 16 Apr 2020 02:27:58: 35000000 INFO @ Thu, 16 Apr 2020 02:28:00: 27000000 INFO @ Thu, 16 Apr 2020 02:28:01: 31000000 INFO @ Thu, 16 Apr 2020 02:28:05: 36000000 INFO @ Thu, 16 Apr 2020 02:28:08: 28000000 INFO @ Thu, 16 Apr 2020 02:28:09: 32000000 INFO @ Thu, 16 Apr 2020 02:28:13: 37000000 INFO @ Thu, 16 Apr 2020 02:28:15: 29000000 INFO @ Thu, 16 Apr 2020 02:28:17: 33000000 INFO @ Thu, 16 Apr 2020 02:28:20: 38000000 INFO @ Thu, 16 Apr 2020 02:28:23: 30000000 INFO @ Thu, 16 Apr 2020 02:28:24: 34000000 INFO @ Thu, 16 Apr 2020 02:28:28: 39000000 INFO @ Thu, 16 Apr 2020 02:28:31: 31000000 INFO @ Thu, 16 Apr 2020 02:28:32: 35000000 INFO @ Thu, 16 Apr 2020 02:28:36: 40000000 INFO @ Thu, 16 Apr 2020 02:28:38: 32000000 INFO @ Thu, 16 Apr 2020 02:28:40: 36000000 INFO @ Thu, 16 Apr 2020 02:28:43: 41000000 INFO @ Thu, 16 Apr 2020 02:28:46: 33000000 INFO @ Thu, 16 Apr 2020 02:28:47: 37000000 INFO @ Thu, 16 Apr 2020 02:28:51: 42000000 INFO @ Thu, 16 Apr 2020 02:28:53: 34000000 INFO @ Thu, 16 Apr 2020 02:28:55: 38000000 INFO @ Thu, 16 Apr 2020 02:28:59: 43000000 INFO @ Thu, 16 Apr 2020 02:29:01: 35000000 INFO @ Thu, 16 Apr 2020 02:29:03: 39000000 INFO @ Thu, 16 Apr 2020 02:29:07: 44000000 INFO @ Thu, 16 Apr 2020 02:29:08: 36000000 INFO @ Thu, 16 Apr 2020 02:29:10: 40000000 INFO @ Thu, 16 Apr 2020 02:29:14: 45000000 INFO @ Thu, 16 Apr 2020 02:29:16: 37000000 INFO @ Thu, 16 Apr 2020 02:29:18: 41000000 INFO @ Thu, 16 Apr 2020 02:29:22: 46000000 INFO @ Thu, 16 Apr 2020 02:29:24: 38000000 INFO @ Thu, 16 Apr 2020 02:29:26: 42000000 INFO @ Thu, 16 Apr 2020 02:29:30: 47000000 INFO @ Thu, 16 Apr 2020 02:29:31: 39000000 INFO @ Thu, 16 Apr 2020 02:29:34: 43000000 INFO @ Thu, 16 Apr 2020 02:29:37: 48000000 INFO @ Thu, 16 Apr 2020 02:29:39: 40000000 INFO @ Thu, 16 Apr 2020 02:29:41: 44000000 INFO @ Thu, 16 Apr 2020 02:29:45: 49000000 INFO @ Thu, 16 Apr 2020 02:29:46: 41000000 INFO @ Thu, 16 Apr 2020 02:29:49: 45000000 INFO @ Thu, 16 Apr 2020 02:29:53: 50000000 INFO @ Thu, 16 Apr 2020 02:29:54: 42000000 INFO @ Thu, 16 Apr 2020 02:29:57: 46000000 INFO @ Thu, 16 Apr 2020 02:30:01: 51000000 INFO @ Thu, 16 Apr 2020 02:30:02: 43000000 INFO @ Thu, 16 Apr 2020 02:30:05: 47000000 INFO @ Thu, 16 Apr 2020 02:30:08: 52000000 INFO @ Thu, 16 Apr 2020 02:30:09: 44000000 INFO @ Thu, 16 Apr 2020 02:30:12: 48000000 INFO @ Thu, 16 Apr 2020 02:30:16: 53000000 INFO @ Thu, 16 Apr 2020 02:30:17: 45000000 INFO @ Thu, 16 Apr 2020 02:30:20: 49000000 INFO @ Thu, 16 Apr 2020 02:30:24: 54000000 INFO @ Thu, 16 Apr 2020 02:30:25: 46000000 INFO @ Thu, 16 Apr 2020 02:30:28: 50000000 INFO @ Thu, 16 Apr 2020 02:30:31: 55000000 INFO @ Thu, 16 Apr 2020 02:30:33: 47000000 INFO @ Thu, 16 Apr 2020 02:30:36: 51000000 INFO @ Thu, 16 Apr 2020 02:30:39: 56000000 INFO @ Thu, 16 Apr 2020 02:30:40: 48000000 INFO @ Thu, 16 Apr 2020 02:30:44: 52000000 INFO @ Thu, 16 Apr 2020 02:30:47: 57000000 INFO @ Thu, 16 Apr 2020 02:30:48: 49000000 INFO @ Thu, 16 Apr 2020 02:30:51: 53000000 INFO @ Thu, 16 Apr 2020 02:30:55: 58000000 INFO @ Thu, 16 Apr 2020 02:30:56: 50000000 INFO @ Thu, 16 Apr 2020 02:30:59: 54000000 INFO @ Thu, 16 Apr 2020 02:31:02: 59000000 INFO @ Thu, 16 Apr 2020 02:31:04: 51000000 INFO @ Thu, 16 Apr 2020 02:31:07: 55000000 INFO @ Thu, 16 Apr 2020 02:31:10: 60000000 INFO @ Thu, 16 Apr 2020 02:31:12: 52000000 INFO @ Thu, 16 Apr 2020 02:31:14: 56000000 INFO @ Thu, 16 Apr 2020 02:31:18: 61000000 INFO @ Thu, 16 Apr 2020 02:31:20: 53000000 INFO @ Thu, 16 Apr 2020 02:31:22: 57000000 INFO @ Thu, 16 Apr 2020 02:31:26: 62000000 INFO @ Thu, 16 Apr 2020 02:31:28: 54000000 INFO @ Thu, 16 Apr 2020 02:31:30: 58000000 INFO @ Thu, 16 Apr 2020 02:31:34: 63000000 INFO @ Thu, 16 Apr 2020 02:31:36: 55000000 INFO @ Thu, 16 Apr 2020 02:31:38: 59000000 INFO @ Thu, 16 Apr 2020 02:31:42: 64000000 INFO @ Thu, 16 Apr 2020 02:31:44: 56000000 INFO @ Thu, 16 Apr 2020 02:31:46: 60000000 INFO @ Thu, 16 Apr 2020 02:31:49: 65000000 INFO @ Thu, 16 Apr 2020 02:31:52: 57000000 INFO @ Thu, 16 Apr 2020 02:31:54: 61000000 INFO @ Thu, 16 Apr 2020 02:31:57: 66000000 INFO @ Thu, 16 Apr 2020 02:32:00: 58000000 INFO @ Thu, 16 Apr 2020 02:32:02: 62000000 INFO @ Thu, 16 Apr 2020 02:32:05: 67000000 INFO @ Thu, 16 Apr 2020 02:32:08: 59000000 INFO @ Thu, 16 Apr 2020 02:32:10: 63000000 INFO @ Thu, 16 Apr 2020 02:32:13: 68000000 INFO @ Thu, 16 Apr 2020 02:32:16: 60000000 INFO @ Thu, 16 Apr 2020 02:32:18: 64000000 INFO @ Thu, 16 Apr 2020 02:32:21: 69000000 INFO @ Thu, 16 Apr 2020 02:32:25: 61000000 INFO @ Thu, 16 Apr 2020 02:32:26: 65000000 INFO @ Thu, 16 Apr 2020 02:32:29: 70000000 INFO @ Thu, 16 Apr 2020 02:32:33: 62000000 INFO @ Thu, 16 Apr 2020 02:32:33: 66000000 INFO @ Thu, 16 Apr 2020 02:32:37: 71000000 INFO @ Thu, 16 Apr 2020 02:32:41: 63000000 INFO @ Thu, 16 Apr 2020 02:32:41: 67000000 INFO @ Thu, 16 Apr 2020 02:32:45: 72000000 INFO @ Thu, 16 Apr 2020 02:32:49: 64000000 INFO @ Thu, 16 Apr 2020 02:32:49: 68000000 INFO @ Thu, 16 Apr 2020 02:32:53: 73000000 INFO @ Thu, 16 Apr 2020 02:32:57: 69000000 INFO @ Thu, 16 Apr 2020 02:32:57: 65000000 INFO @ Thu, 16 Apr 2020 02:33:01: 74000000 INFO @ Thu, 16 Apr 2020 02:33:05: 70000000 INFO @ Thu, 16 Apr 2020 02:33:05: 66000000 INFO @ Thu, 16 Apr 2020 02:33:08: 75000000 INFO @ Thu, 16 Apr 2020 02:33:13: 67000000 INFO @ Thu, 16 Apr 2020 02:33:13: 71000000 INFO @ Thu, 16 Apr 2020 02:33:16: 76000000 INFO @ Thu, 16 Apr 2020 02:33:21: 72000000 INFO @ Thu, 16 Apr 2020 02:33:22: 68000000 INFO @ Thu, 16 Apr 2020 02:33:23: 77000000 INFO @ Thu, 16 Apr 2020 02:33:29: 73000000 INFO @ Thu, 16 Apr 2020 02:33:30: 69000000 INFO @ Thu, 16 Apr 2020 02:33:32: 78000000 INFO @ Thu, 16 Apr 2020 02:33:37: 74000000 INFO @ Thu, 16 Apr 2020 02:33:38: 70000000 INFO @ Thu, 16 Apr 2020 02:33:39: 79000000 INFO @ Thu, 16 Apr 2020 02:33:45: 75000000 INFO @ Thu, 16 Apr 2020 02:33:47: 80000000 INFO @ Thu, 16 Apr 2020 02:33:47: 71000000 INFO @ Thu, 16 Apr 2020 02:33:53: 76000000 INFO @ Thu, 16 Apr 2020 02:33:55: 81000000 INFO @ Thu, 16 Apr 2020 02:33:55: 72000000 INFO @ Thu, 16 Apr 2020 02:34:00: 77000000 INFO @ Thu, 16 Apr 2020 02:34:03: 82000000 INFO @ Thu, 16 Apr 2020 02:34:04: 73000000 INFO @ Thu, 16 Apr 2020 02:34:09: 78000000 INFO @ Thu, 16 Apr 2020 02:34:11: 83000000 INFO @ Thu, 16 Apr 2020 02:34:12: 74000000 INFO @ Thu, 16 Apr 2020 02:34:17: 79000000 INFO @ Thu, 16 Apr 2020 02:34:19: 84000000 INFO @ Thu, 16 Apr 2020 02:34:20: 75000000 INFO @ Thu, 16 Apr 2020 02:34:24: 80000000 INFO @ Thu, 16 Apr 2020 02:34:28: 85000000 INFO @ Thu, 16 Apr 2020 02:34:28: 76000000 INFO @ Thu, 16 Apr 2020 02:34:32: 81000000 INFO @ Thu, 16 Apr 2020 02:34:36: 86000000 INFO @ Thu, 16 Apr 2020 02:34:36: 77000000 INFO @ Thu, 16 Apr 2020 02:34:41: 82000000 INFO @ Thu, 16 Apr 2020 02:34:44: 87000000 INFO @ Thu, 16 Apr 2020 02:34:45: 78000000 INFO @ Thu, 16 Apr 2020 02:34:49: 83000000 INFO @ Thu, 16 Apr 2020 02:34:51: 88000000 INFO @ Thu, 16 Apr 2020 02:34:53: 79000000 INFO @ Thu, 16 Apr 2020 02:34:57: 84000000 INFO @ Thu, 16 Apr 2020 02:34:59: 89000000 INFO @ Thu, 16 Apr 2020 02:35:01: 80000000 INFO @ Thu, 16 Apr 2020 02:35:05: 85000000 INFO @ Thu, 16 Apr 2020 02:35:07: 90000000 INFO @ Thu, 16 Apr 2020 02:35:09: 81000000 INFO @ Thu, 16 Apr 2020 02:35:13: 86000000 INFO @ Thu, 16 Apr 2020 02:35:15: 91000000 INFO @ Thu, 16 Apr 2020 02:35:18: 82000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Thu, 16 Apr 2020 02:35:21: 87000000 INFO @ Thu, 16 Apr 2020 02:35:23: 92000000 INFO @ Thu, 16 Apr 2020 02:35:26: 83000000 INFO @ Thu, 16 Apr 2020 02:35:28: 88000000 INFO @ Thu, 16 Apr 2020 02:35:31: 93000000 INFO @ Thu, 16 Apr 2020 02:35:34: 84000000 INFO @ Thu, 16 Apr 2020 02:35:36: 89000000 INFO @ Thu, 16 Apr 2020 02:35:39: 94000000 INFO @ Thu, 16 Apr 2020 02:35:42: 85000000 INFO @ Thu, 16 Apr 2020 02:35:44: 90000000 INFO @ Thu, 16 Apr 2020 02:35:46: 95000000 INFO @ Thu, 16 Apr 2020 02:35:50: 86000000 INFO @ Thu, 16 Apr 2020 02:35:52: 91000000 INFO @ Thu, 16 Apr 2020 02:35:54: 96000000 INFO @ Thu, 16 Apr 2020 02:35:59: 87000000 INFO @ Thu, 16 Apr 2020 02:36:00: 92000000 INFO @ Thu, 16 Apr 2020 02:36:03: 97000000 INFO @ Thu, 16 Apr 2020 02:36:07: 88000000 INFO @ Thu, 16 Apr 2020 02:36:08: 93000000 INFO @ Thu, 16 Apr 2020 02:36:11: 98000000 INFO @ Thu, 16 Apr 2020 02:36:15: 89000000 INFO @ Thu, 16 Apr 2020 02:36:16: 94000000 INFO @ Thu, 16 Apr 2020 02:36:16: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 02:36:16: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 02:36:16: #1 total tags in treatment: 34536015 INFO @ Thu, 16 Apr 2020 02:36:16: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 02:36:16: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 02:36:17: #1 tags after filtering in treatment: 23207906 INFO @ Thu, 16 Apr 2020 02:36:17: #1 Redundant rate of treatment: 0.33 INFO @ Thu, 16 Apr 2020 02:36:17: #1 finished! INFO @ Thu, 16 Apr 2020 02:36:17: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 02:36:17: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 02:36:18: #2 number of paired peaks: 1538 INFO @ Thu, 16 Apr 2020 02:36:18: start model_add_line... INFO @ Thu, 16 Apr 2020 02:36:19: start X-correlation... INFO @ Thu, 16 Apr 2020 02:36:19: end of X-cor INFO @ Thu, 16 Apr 2020 02:36:19: #2 finished! INFO @ Thu, 16 Apr 2020 02:36:19: #2 predicted fragment length is 240 bps INFO @ Thu, 16 Apr 2020 02:36:19: #2 alternative fragment length(s) may be 4,240 bps INFO @ Thu, 16 Apr 2020 02:36:19: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619558/SRX6619558.05_model.r WARNING @ Thu, 16 Apr 2020 02:36:19: #2 Since the d (240) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 02:36:19: #2 You may need to consider one of the other alternative d(s): 4,240 WARNING @ Thu, 16 Apr 2020 02:36:19: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 02:36:19: #3 Call peaks... INFO @ Thu, 16 Apr 2020 02:36:19: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 02:36:22: 90000000 INFO @ Thu, 16 Apr 2020 02:36:24: 95000000 BigWig に変換しました。 INFO @ Thu, 16 Apr 2020 02:36:30: 91000000 INFO @ Thu, 16 Apr 2020 02:36:31: 96000000 INFO @ Thu, 16 Apr 2020 02:36:38: 92000000 INFO @ Thu, 16 Apr 2020 02:36:39: 97000000 INFO @ Thu, 16 Apr 2020 02:36:46: 93000000 INFO @ Thu, 16 Apr 2020 02:36:47: 98000000 INFO @ Thu, 16 Apr 2020 02:36:52: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 02:36:52: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 02:36:52: #1 total tags in treatment: 34536015 INFO @ Thu, 16 Apr 2020 02:36:52: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 02:36:52: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 02:36:53: #1 tags after filtering in treatment: 23207906 INFO @ Thu, 16 Apr 2020 02:36:53: #1 Redundant rate of treatment: 0.33 INFO @ Thu, 16 Apr 2020 02:36:53: #1 finished! INFO @ Thu, 16 Apr 2020 02:36:53: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 02:36:53: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 02:36:54: 94000000 INFO @ Thu, 16 Apr 2020 02:36:55: #2 number of paired peaks: 1538 INFO @ Thu, 16 Apr 2020 02:36:55: start model_add_line... INFO @ Thu, 16 Apr 2020 02:36:55: start X-correlation... INFO @ Thu, 16 Apr 2020 02:36:55: end of X-cor INFO @ Thu, 16 Apr 2020 02:36:55: #2 finished! INFO @ Thu, 16 Apr 2020 02:36:55: #2 predicted fragment length is 240 bps INFO @ Thu, 16 Apr 2020 02:36:55: #2 alternative fragment length(s) may be 4,240 bps INFO @ Thu, 16 Apr 2020 02:36:55: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619558/SRX6619558.10_model.r WARNING @ Thu, 16 Apr 2020 02:36:55: #2 Since the d (240) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 02:36:55: #2 You may need to consider one of the other alternative d(s): 4,240 WARNING @ Thu, 16 Apr 2020 02:36:55: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 02:36:55: #3 Call peaks... INFO @ Thu, 16 Apr 2020 02:36:55: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 02:37:02: 95000000 INFO @ Thu, 16 Apr 2020 02:37:09: 96000000 INFO @ Thu, 16 Apr 2020 02:37:17: 97000000 INFO @ Thu, 16 Apr 2020 02:37:24: 98000000 INFO @ Thu, 16 Apr 2020 02:37:26: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 02:37:29: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 02:37:29: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 02:37:29: #1 total tags in treatment: 34536015 INFO @ Thu, 16 Apr 2020 02:37:29: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 02:37:29: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 02:37:30: #1 tags after filtering in treatment: 23207906 INFO @ Thu, 16 Apr 2020 02:37:30: #1 Redundant rate of treatment: 0.33 INFO @ Thu, 16 Apr 2020 02:37:30: #1 finished! INFO @ Thu, 16 Apr 2020 02:37:30: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 02:37:30: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 02:37:31: #2 number of paired peaks: 1538 INFO @ Thu, 16 Apr 2020 02:37:31: start model_add_line... INFO @ Thu, 16 Apr 2020 02:37:32: start X-correlation... INFO @ Thu, 16 Apr 2020 02:37:32: end of X-cor INFO @ Thu, 16 Apr 2020 02:37:32: #2 finished! INFO @ Thu, 16 Apr 2020 02:37:32: #2 predicted fragment length is 240 bps INFO @ Thu, 16 Apr 2020 02:37:32: #2 alternative fragment length(s) may be 4,240 bps INFO @ Thu, 16 Apr 2020 02:37:32: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619558/SRX6619558.20_model.r WARNING @ Thu, 16 Apr 2020 02:37:32: #2 Since the d (240) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 02:37:32: #2 You may need to consider one of the other alternative d(s): 4,240 WARNING @ Thu, 16 Apr 2020 02:37:32: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 02:37:32: #3 Call peaks... INFO @ Thu, 16 Apr 2020 02:37:32: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 02:37:47: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619558/SRX6619558.05_peaks.xls INFO @ Thu, 16 Apr 2020 02:37:48: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619558/SRX6619558.05_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 02:37:48: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619558/SRX6619558.05_summits.bed INFO @ Thu, 16 Apr 2020 02:37:48: Done! pass1 - making usageList (6 chroms): 3 millis pass2 - checking and writing primary data (19434 records, 4 fields): 17 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 02:38:02: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 02:38:23: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619558/SRX6619558.10_peaks.xls INFO @ Thu, 16 Apr 2020 02:38:23: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619558/SRX6619558.10_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 02:38:24: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619558/SRX6619558.10_summits.bed INFO @ Thu, 16 Apr 2020 02:38:24: Done! pass1 - making usageList (6 chroms): 2 millis pass2 - checking and writing primary data (12257 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 02:38:38: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 02:38:59: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619558/SRX6619558.20_peaks.xls INFO @ Thu, 16 Apr 2020 02:38:59: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619558/SRX6619558.20_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 02:38:59: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619558/SRX6619558.20_summits.bed INFO @ Thu, 16 Apr 2020 02:38:59: Done! pass1 - making usageList (6 chroms): 2 millis pass2 - checking and writing primary data (5811 records, 4 fields): 6 millis CompletedMACS2peakCalling